Richard Campen campenr

## tidy_mothur_output.py
def tidy_output_dir(mothur_obj, whitelist=list()):
    """
    Removes files from the output directory that are not listed in the current_files attribute or a whitelist.

    USE WITH CAUTION: This will delete any files in the mothur objects output directory (which may just be the current working
    directory) which can have unintended consequences.

    This function was breifly included in mothur-py.utils, but the danger of its accidental use deleting important files has
    relegated it to a gist.


## openGL_on_WLSS.md

      
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                campenr
                / openGL_on_WLSS.md
            
            
              Created
              February 17, 2018 00:40
            
              
                Developing openGL on Ubuntu on the Windows Linux Subsystem
              
          
Install Ubuntu through the Windows store


Enable rendering of GUI applications from Ubuntu/WLSS in Windows using a Windows X-server


Install VxSrv on Windows
On Ubuntu/WLSS open .bashrc and add the following lines to the end, then save file and restart:

# tell GUI display to use the Windows X-server listening on localhost:0.0
export DISPLAY=localhost:0.0
# make rendering happen on the Windows side of things rather than Ubuntu


## make_old_colormap.py
"""
Richard Campen, 2017

Before matplotlib version 2.0 the set of qualitative colormaps 'Accent', 'Dark2', 'Paired', 'Pastel1', 'Pastel2', 'Set1',
'Set2', and 'Set3' were continuous colormaps. As of matplotlib 2.0 these colormaps are discrete as per the change logs
(http://matplotlib.org/users/whats_new.html#qualitative-colormaps).

To recreate the continuous form of these colormaps as per pre 2.0 use the below code, changing the name of the colormap
as necessary.
	def tidy_output_dir(mothur_obj, whitelist=list()):
	"""
	Removes files from the output directory that are not listed in the current_files attribute or a whitelist.

	USE WITH CAUTION: This will delete any files in the mothur objects output directory (which may just be the current working
	directory) which can have unintended consequences.

	This function was breifly included in mothur-py.utils, but the danger of its accidental use deleting important files has
	relegated it to a gist.
	"""
	Richard Campen, 2017

	Before matplotlib version 2.0 the set of qualitative colormaps 'Accent', 'Dark2', 'Paired', 'Pastel1', 'Pastel2', 'Set1',
	'Set2', and 'Set3' were continuous colormaps. As of matplotlib 2.0 these colormaps are discrete as per the change logs
	(http://matplotlib.org/users/whats_new.html#qualitative-colormaps).

	To recreate the continuous form of these colormaps as per pre 2.0 use the below code, changing the name of the colormap
	as necessary.