R: Packages to install

PackagesToInstall.R

# DEVTOOLS
library(devtools)
build_github_devtools()
install.packages("devtools.zip", repos = NULL)
unlink("devtools.zip")
# RMetrics
source('http://www.rmetrics.org/Rmetrics.R')
install.Rmetrics()
# Additional set of repositories
setRepositories(addURLs = c(CRANxtras = 'http://www.stats.ox.ac.uk/pub/RWin'))
cran.pkgs=c('xts','quantmod','quadprog','PerformanceAnalytics','ggplot2','gdata','YieldCurve','RQuantLib','robust','leaps','lars','ff','tseries','RlpSolve','RlpSolveAPI','Rsymphony','Ripop','Rsocp','IBrokers','rJava','iplots','miscTools','systemfit','lmtest','np','rgl','sandwich','XML','chron','Kendall','FNN','WDI','animation','tawny','RCurl','termstrc','maRketSim','traitr','truncnorm','data.table','FME','actuar','frmqa','CreditMetrics','crp.CSFP','portfolio','portfolioSim','stockPortfolio','financial','ttrTests','PairTrading','BurStFin','devtools','deducorrect','scales','tourr','objectSignals','objectProperties','plumbr','HiveR','rggobi','Rglpk','Hmisc','sn','ROAuth','twitteR','cwhmisc','lpSolve','sculpt3d','strucchange','rbenchmark','fanplot','nloptr', 'rdatamarket','TableToLongForm','MASS','migest','phaseR', 'TableToLongForm', 'spartan', 'prinsimp','eeptools','xlsx','webvis','gridGraphics','gridGraphviz','qdapRegex','curl','corrplot','FinancialInstrument', "magrittr", "lazyeval", "DBI", "BH","rneos", 'moments', 'pipeR', 'htmlwidgets','sjPlot','R.matlab','wbstats','flexdashboard','addinslist','ggExtra','ggThemeAssist', 'githubinstall', 'readxl', 'hts', 'dygraphs', 'foreach', 'caret', 'deepnet', 'prettydoc', 'forcats', 'anytime', 'depmix', 'depmixS4', 'tidyverse')
install.packages(cran.pkgs)

'RlpSolve', 'RlpSolveAPI', 'Ripop', 'Rsocp', 'financial', 'ttrTests', 'PairTrading', 'sculpt3d', 'Rsolnp2', 'Ripop', 'Rsocp', 'Rquadprog', 'TrueFX', 'qmao', 'twsInstrument', 'logopt', 'pnl', 'tradesys', 'tableplot', 'scatterplot3d', 'RlpSolve', 'RlpSolveAPI', 'factorAnalyticsUW'

Pkg <- c("base","downloader","forecast","httr","jsonlite","lubridate","moments", "PerformanceAnalytics","quantmod","reshape2","RCurl","stats","scales","tseries", "TTR","TSA","xts","zoo")
inst <- Pkg %in% installed.packages()
if(length(Pkg[!inst]) > 0) install.packages(Pkg[!inst])
instpackages <- lapply(Pkg, library, character.only=TRUE)

rforge.pkgs=c('Rdonlp2','Rsolnp2','Ripop','Rsocp','Rquadprog','parma','TrueFX','spd','qmao','twsInstrument','bertin','logopt','pnl','tradesys','candlesticks','tableplot','scatterplot3d','pa','RlpSolve','RlpSolveAPI','factorAnalyticsUW','rPython')
rforge.repo='http://R-Forge.R-project.org'
install.packages(rforge.pkgs,repo=rforge.repo)
install.packages("GARPFRM", repos="http://R-Forge.R-project.org")

rforgen.pkgs=c('multicore','Acinonyx','Cairo')
install.packages(rforgen.pkgs,repo='http://www.rforge.net/')
# Install graphic packages
install.packages(c("sparkTable", "iplots","BiplotGUI","iWebPlots", "compareGroups","ChainLadder", "extracat", "vcd", "vcdExtra", "Rcmdr","R.rsp", "brew","WDI","RJSONIO", "playwith"))
install.packages("RTAQ", repos="http://R-Forge.R-project.org")


install.packages('ProjectTemplate')

cran.pkgs=c('quadprog','YieldCurve','leaps','lars','IBrokers','rJava','miscTools','systemfit','lmtest','np','rgl','sandwich','chron','Kendall','FNN','WDI','animation','tawny','RCurl','termstrc','maRketSim','traitr','truncnorm','data.table','FME','frmqa','CreditMetrics','crp.CSFP','portfolio','portfolioSim','stockPortfolio','financial','ttrTests','PairTrading','BurStFin','deducorrect','scales','tourr','objectSignals','objectProperties','plumbr','HiveR','rggobi','sn','ROAuth','twitteR', 'ROI', 'ROI.plugin.glpk', 'ROI.plugin.quadprog', 'ROI.plugin.symphony', "matlab", "pracma", "dlm", 'ESGtoolkit','FRAPO', 'FinCal', 'backtest', 'financial', 'm4fe', 'opefimor', 'XBRL')

source("http://bioconductor.org/biocLite.R")
biocLite("Biobase")
biocLite("AnnotationDbi")
biocLite("annotate")
biocLite("geneplotter")

# Mostly Harmless
options(repos = c(XRAN = "http://mostly-harmless.github.io/radiant_miniCRAN/"))
install.packages("radiant")

# GitHub
install_github('hadley/assertthat')
install_github('hadley/dplyr')
install_github('rstudio/ggvis')
install_github('rstudio/shiny')
install_github('rstudio/shiny-incubator')
install_github("rstudio/packrat")
install_github('rstudio/shinyapps')
install_github('mostly-harmless/select2shiny')
install_github('mostly-harmless/radiant')
install_github(c("ramnathv/htmlwidgets", "smartinsightsfromdata/rpivotTable"))
install_github('smartinsightsfromdata/shinyhdtable')
install_github('rich-iannone/DiagrammeR')
install_github('hadley/ggplot2')
install_github('hadley/plyr')
install_github('hadley/lubridate')
install_github('hadley/testthat')
install_github('hadley/rvest')
install_github('caseyWebb/selectr')
install_github('jrnold/ggthemes')
install_github('garrettgman/ggsubplot')
install_github('jcheng5/googleCharts')
install_github('johnmyleswhite/ProjectTemplate')
install_github('yihui/knitr')
install_github('yihui/formatR')
install_github('yihui/highr')
install_github('yihui/evaluate')
install_github('ramnathv/rCharts')
install_github('ramnathv/rNVD3', force = TRUE)
install_github('ramnathv/slidify')
install_github('ramnathv/slidifyLibraries')
install_github('ramnathv/rNotebook')
install_github('oscarperpinan/rastervis')
install_github('oscarperpinan/spacetime-vis')
install_github('nachocab/clickme')
install_github('ncarchedi/swirl')
install_github('trestletech/shinyTable')
install_github('trestletech/shinyAce')
install_github('IlyaKipnis/IKTrading')
install_github('ropensci/RSelenium')
install_github('ropensci/plotly')
install_github('ropensci/git2r')
install_github("renkun-ken/rlist")
install_github("cran/SparseM")
install_github("cran/quantreg")
install_github('dmbates/NISTnls')
install_github('yrosseel/lavaan')
install.packages("quantstrat", repos="http://R-Forge.R-project.org")
install.packages("foreach")
install_github("cran/BLCOP")
install_github("yanyachen/FinCovRegularization")
install_github('quandl/R-package')
install_github(c("ramnathv/htmlwidgets", "rstudio/dygraphs"))
install_github("thertrader/fidlr")
install_github("robjhyndman/hts")

#
depends <- c("MASS","car","foreign","ggplot2","plyr","lmtest","reshape2","scales","quantreg")
for (i in 1:length(depends)) {
  if ((depends[i] %in% rownames(installed.packages()))==FALSE) {
    cat(paste0("Installing missing package \"", depends[i], "\"...\n"))
    install.packages(depends[i])
  }
  else {
    cat(paste0("Package \"", depends[i], "\" already installed...\n"))
  }
}
#
install.packages("PairTrading", repos="http://R-Forge.R-project.org")
svn checkout svn://scm.r-forge.r-project.org/svnroot/pairtrading/
install.packages("pnl", repos="http://R-Forge.R-project.org")  
svn checkout svn://svn.r-forge.r-project.org/svnroot/pnl/
svn checkout svn://scm.r-forge.r-project.org/svnroot/nmof/