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carlomazzaferro /
Created Nov 22, 2018
Inheriting docstrings from a top level function with decorators
This is particularly useful when using sphinx autodoc, when you have functions that share the same functionality
(say a cli command that wraps a function) and you don't want to rewrite the docstrings for each of them.
def register_docstrings(parent=None):
def doc_decorator(func):
func.__doc__ = parent.__doc__ + func.__doc__
return func
return doc_decorator
carlomazzaferro /
Last active Feb 1, 2017
OOP approach to creating a predictive model using perceptron learning in Python.
import pandas as pd
import numpy as np
import matplotlib.pyplot as plt
class Perceptron(object):
def __init__(self, train, labels, learning_rate, iterations):
self.train = train
self.labels = labels
carlomazzaferro /
Created Dec 2, 2016
Parsing fasta file to python lists: protein ID, peptide sequence
def create_separate_lists(fasta_file):
Creates 2 lists from a fasta file
:param fasta_file: file
:return: one list for the IDs in the file and one list for the proteins/peptides in it
with open(fasta_file) as infile:
all_list = []
peptide = ""
lines = infile.readlines()
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