I hereby claim:
- I am caryan on github.
- I am caryan (https://keybase.io/caryan) on keybase.
- I have a public key whose fingerprint is 437A E338 3B0B DB58 2F86 1E08 DE63 FA60 3D8F 1124
To claim this, I am signing this object:
Colm Ryan caryan
caryan
/ Where to measure a Ramsey curve.ipynb
Created
July 2, 2020 03:58
The tradeoff between sensitivity and projection noise in the optimal sampling time for a Ramsey experiment
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caryan
/ Timing Small Functions.ipynb
Created
June 19, 2020 04:08
Measuring Python function call overhead
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caryan
/ Quantum Optimal Control with SciML.ipynb
Created
June 10, 2020 04:32
Quantum Optimal Control with SciML and Julia
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caryan
/ ModelingToolkit Manual CSE.ipynb
Created
May 20, 2020 21:17
Demonstrate how manual CSE can speed up ModelingToolkit ODE functions
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caryan
/ Savitsky Golay.ipynb
Last active
February 28, 2020 05:43
Two approaches to Savitsky Golay filtering in Julia
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caryan
/ pylint_to_gitlab_codeclimate.py
Last active
February 23, 2024 07:40
Convert pylint output to simplified CodeClimate JSON suitable for Gitlab Code Quality checks
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| import hashlib | |
| import html | |
| import json | |
| import sys | |
| from typing import Optional | |
| from pylint.reporters import JSONReporter | |
| from pylint.lint import Run | |
| # map pylint categories to CodeClimate severity |
caryan
/ Compiling QAOA with CZ and iSWAP.ipynb
Created
November 20, 2019 04:50
fully connected Ising QAOA mapped to a line with CZ and iSWAP
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caryan
/ variant_calling.jl
Created
May 30, 2016 00:29
Julia script wrapping a Picard and GATK variant calling pipeline
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| using Glob | |
| using DataFrames | |
| const PICARD = "/home/cryan/Downloads/picard-tools-2.1.0/picard.jar" | |
| const GATK = "/home/cryan/Downloads/GATK/GenomeAnalysisTK.jar" | |
| function prepare_reference(ref) | |
| #index the reference for bwa | |
| run(`bwa index $ref.fasta`) | |
| #sort the reference TODO: does it need to be sorted? .fai file seems minimal |
caryan
/ Ramsey Simulations for Britton.ipynb
Last active
December 3, 2015 04:12
Ramsey simulations for Britton
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