Boston Evolutionary Genomics Supergroup Meeting
October 7, 2016
These are some notes and annotated references from my talk at the Boston Evolutionary Genomics Supergroup Meeting.
|# This is a full set of commands to install [Agalma](https://bitbucket.org/caseywdunn/agalma)|
|# from the on Ubuntu Server from the tarballs. It has been tested on the AWS Ubuntu Server AMI.|
|sudo apt-get update|
|sudo apt-get install make|
|sudo sh install_biolite_ubuntu.sh|
These examples of regular expressions are taken largely from our book Practical computing for Biologists. More information is available at http://practicalcomputing.org.
Given the following names:
Agalma elegans Frillagalma vitiazi
First, some nomenclature (see https://conda.io/docs/glossary.html for more):
A typical workflow:
June 25, 2017 (and updated since then)
These are some notes and annotated references relevant to my talk with Stacey Smith in the symposium "SSB Symposium Phylogenetic approaches to connecting genotypes to phenotypes" at Evolution 2017.
If you are interested in any of this work let me know. I am moving to Yale and looking for people to join the new research group.
|# Setting up virtualenv on macOS Yosemite|
|which python # check location of system version|
|brew install python|
|brew install freetype # Needed by some python packages|
|brew install libxml2 # Needed by some python packages|
|pip install virtualenv virtualenvwrapper pytest|