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caticoa3/ilastik_run.sh

Last active June 15, 2018 19:11
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Running ilastik at command line with two processors and targeted maximum of 2000MB of ram
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ilastik_run.sh
LAZYFLOW_THREADS=2 LAZYFLOW_TOTAL_RAM_MB=2000 ~/Applications/ilastik-1.3.0-Linux/run_ilastik.sh --headless --project segmentation_0_corrected.ilp --raw_data IllumCorr/*.??.??/*/*CY3*IC.tiff --output_format tiff --output_filename_format {dataset_dir}/{nickname}_{result_type}.tiff --export_source="Simple Segmentation"
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