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@cbergman
cbergman / bedtools_cheatsheet.md
Created January 29, 2021 15:35 — forked from ilevantis/bedtools_cheatsheet.md
Bedtools cheatsheet

Bedtools Cheatsheet

General:

Tools Description
flank Create new intervals from the flanks of existing intervals.
slop Adjust the size of intervals.
shift Adjust the position of intervals.
subtract Remove intervals based on overlaps b/w two files.
@cbergman
cbergman / gist:e2cc8a2f6b2162c02789
Created November 8, 2015 20:54 — forked from pb-jchin/gist:6359919
Saccharomyces cerevisiae W303 PacBio Sequence data and assembly
http://datasets.pacb.com.s3.amazonaws.com/2013/Yeast/0001/Analysis_Results/m130605_000141_42207_c100515142550000001823076608221372_s1_p0.1.bax.h5
http://datasets.pacb.com.s3.amazonaws.com/2013/Yeast/0001/Analysis_Results/m130605_000141_42207_c100515142550000001823076608221372_s1_p0.2.bax.h5
http://datasets.pacb.com.s3.amazonaws.com/2013/Yeast/0001/Analysis_Results/m130605_000141_42207_c100515142550000001823076608221372_s1_p0.3.bax.h5
http://datasets.pacb.com.s3.amazonaws.com/2013/Yeast/0001/Analysis_Results/m130605_000141_42207_c100515142550000001823076608221372_s1_p0.bas.h5
http://datasets.pacb.com.s3.amazonaws.com/2013/Yeast/0001/m130605_000141_42207_c100515142550000001823076608221372_s1_p0.metadata.xml
http://datasets.pacb.com.s3.amazonaws.com/2013/Yeast/0002/Analysis_Results/m130605_032054_42207_c100515142550000001823076608221373_s1_p0.1.bax.h5
http://datasets.pacb.com.s3.amazonaws.com/2013/Yeast/0002/Analysis_Results/m130605_032054_42207_c100515142550000001823076608221373_s1_p0.2.bax.h5
http://datasets.p