Skip to content

Instantly share code, notes, and snippets.

@cdeil
Created June 29, 2012 07:29
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save cdeil/3016475 to your computer and use it in GitHub Desktop.
Save cdeil/3016475 to your computer and use it in GitHub Desktop.
skimage b891a7c9d18a2a40942d3cec5608597e4cb9de1c build / docs / test log
christoph-deils-macbook:scikits-image deil$ python setup.py install --user
cython -o /Users/deil/code/scikits-image/skimage/graph/_spath.c /Users/deil/code/scikits-image/skimage/graph/_spath.pyx
cython -o /Users/deil/code/scikits-image/skimage/graph/_mcp.c /Users/deil/code/scikits-image/skimage/graph/_mcp.pyx
cython -o /Users/deil/code/scikits-image/skimage/graph/heap.c /Users/deil/code/scikits-image/skimage/graph/heap.pyx
cython -o /Users/deil/code/scikits-image/skimage/io/_plugins/_colormixer.c /Users/deil/code/scikits-image/skimage/io/_plugins/_colormixer.pyx
cython -o /Users/deil/code/scikits-image/skimage/io/_plugins/_histograms.c /Users/deil/code/scikits-image/skimage/io/_plugins/_histograms.pyx
cython -o /Users/deil/code/scikits-image/skimage/morphology/ccomp.c /Users/deil/code/scikits-image/skimage/morphology/ccomp.pyx
cython -o /Users/deil/code/scikits-image/skimage/morphology/cmorph.c /Users/deil/code/scikits-image/skimage/morphology/cmorph.pyx
cython -o /Users/deil/code/scikits-image/skimage/morphology/_watershed.c /Users/deil/code/scikits-image/skimage/morphology/_watershed.pyx
cython -o /Users/deil/code/scikits-image/skimage/morphology/_skeletonize.c /Users/deil/code/scikits-image/skimage/morphology/_skeletonize.pyx
cython -o /Users/deil/code/scikits-image/skimage/morphology/_pnpoly.c /Users/deil/code/scikits-image/skimage/morphology/_pnpoly.pyx
cython -o /Users/deil/code/scikits-image/skimage/morphology/_convex_hull.c /Users/deil/code/scikits-image/skimage/morphology/_convex_hull.pyx
cython -o /Users/deil/code/scikits-image/skimage/filter/_ctmf.c /Users/deil/code/scikits-image/skimage/filter/_ctmf.pyx
cython -o /Users/deil/code/scikits-image/skimage/transform/_hough_transform.c /Users/deil/code/scikits-image/skimage/transform/_hough_transform.pyx
cython -o /Users/deil/code/scikits-image/skimage/transform/_project.c /Users/deil/code/scikits-image/skimage/transform/_project.pyx
cython -o /Users/deil/code/scikits-image/skimage/draw/_draw.c /Users/deil/code/scikits-image/skimage/draw/_draw.pyx
cython -o /Users/deil/code/scikits-image/skimage/feature/_greycomatrix.c /Users/deil/code/scikits-image/skimage/feature/_greycomatrix.pyx
cython -o /Users/deil/code/scikits-image/skimage/feature/_template.c /Users/deil/code/scikits-image/skimage/feature/_template.pyx
cython -o /Users/deil/code/scikits-image/skimage/measure/_find_contours.c /Users/deil/code/scikits-image/skimage/measure/_find_contours.pyx
cython -o /Users/deil/code/scikits-image/skimage/measure/_moments.c /Users/deil/code/scikits-image/skimage/measure/_moments.pyx
running install
running bdist_egg
running egg_info
running build_src
build_src
building extension "skimage.graph._spath" sources
building extension "skimage.graph._mcp" sources
building extension "skimage.graph.heap" sources
building extension "skimage.io._plugins._colormixer" sources
building extension "skimage.io._plugins._histograms" sources
building extension "skimage.morphology.ccomp" sources
building extension "skimage.morphology.cmorph" sources
building extension "skimage.morphology._watershed" sources
building extension "skimage.morphology._skeletonize" sources
building extension "skimage.morphology._pnpoly" sources
building extension "skimage.morphology._convex_hull" sources
building extension "skimage.filter._ctmf" sources
building extension "skimage.transform._hough_transform" sources
building extension "skimage.transform._project" sources
building extension "skimage.draw._draw" sources
building extension "skimage.feature._greycomatrix" sources
building extension "skimage.feature._template" sources
building extension "skimage.measure._find_contours" sources
building extension "skimage.measure._moments" sources
building data_files sources
build_src: building npy-pkg config files
writing scikits_image.egg-info/PKG-INFO
writing top-level names to scikits_image.egg-info/top_level.txt
writing dependency_links to scikits_image.egg-info/dependency_links.txt
writing entry points to scikits_image.egg-info/entry_points.txt
reading manifest file 'scikits_image.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'setup.cfg'
no previously-included directories found matching 'doc/build'
writing manifest file 'scikits_image.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.7-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-2.7
creating build/lib.macosx-10.7-x86_64-2.7/skimage
copying skimage/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage
copying skimage/_build.py -> build/lib.macosx-10.7-x86_64-2.7/skimage
copying skimage/setup.py -> build/lib.macosx-10.7-x86_64-2.7/skimage
copying skimage/version.py -> build/lib.macosx-10.7-x86_64-2.7/skimage
creating build/lib.macosx-10.7-x86_64-2.7/skimage/color
copying skimage/color/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/color
copying skimage/color/colorconv.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/color
creating build/lib.macosx-10.7-x86_64-2.7/skimage/data
copying skimage/data/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/data
creating build/lib.macosx-10.7-x86_64-2.7/skimage/draw
copying skimage/draw/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/draw
copying skimage/draw/draw.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/draw
copying skimage/draw/setup.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/draw
creating build/lib.macosx-10.7-x86_64-2.7/skimage/exposure
copying skimage/exposure/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/exposure
copying skimage/exposure/exposure.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/exposure
creating build/lib.macosx-10.7-x86_64-2.7/skimage/feature
copying skimage/feature/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/feature
copying skimage/feature/greycomatrix.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/feature
copying skimage/feature/harris.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/feature
copying skimage/feature/hog.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/feature
copying skimage/feature/peak.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/feature
copying skimage/feature/setup.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/feature
copying skimage/feature/template.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/feature
creating build/lib.macosx-10.7-x86_64-2.7/skimage/filter
copying skimage/filter/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/filter
copying skimage/filter/canny.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/filter
copying skimage/filter/ctmf.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/filter
copying skimage/filter/edges.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/filter
copying skimage/filter/lpi_filter.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/filter
copying skimage/filter/rank_order.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/filter
copying skimage/filter/setup.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/filter
copying skimage/filter/thresholding.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/filter
copying skimage/filter/tv_denoise.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/filter
creating build/lib.macosx-10.7-x86_64-2.7/skimage/graph
copying skimage/graph/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/graph
copying skimage/graph/mcp.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/graph
copying skimage/graph/setup.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/graph
copying skimage/graph/spath.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/graph
creating build/lib.macosx-10.7-x86_64-2.7/skimage/io
copying skimage/io/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io
copying skimage/io/_io.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io
copying skimage/io/collection.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io
copying skimage/io/setup.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io
copying skimage/io/sift.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io
copying skimage/io/video.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io
creating build/lib.macosx-10.7-x86_64-2.7/skimage/measure
copying skimage/measure/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/measure
copying skimage/measure/_regionprops.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/measure
copying skimage/measure/_structural_similarity.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/measure
copying skimage/measure/find_contours.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/measure
copying skimage/measure/setup.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/measure
creating build/lib.macosx-10.7-x86_64-2.7/skimage/morphology
copying skimage/morphology/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/morphology
copying skimage/morphology/convex_hull.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/morphology
copying skimage/morphology/grey.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/morphology
copying skimage/morphology/selem.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/morphology
copying skimage/morphology/setup.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/morphology
copying skimage/morphology/skeletonize.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/morphology
copying skimage/morphology/watershed.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/morphology
creating build/lib.macosx-10.7-x86_64-2.7/skimage/scripts
copying skimage/scripts/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/scripts
copying skimage/scripts/skivi.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/scripts
creating build/lib.macosx-10.7-x86_64-2.7/skimage/segmentation
copying skimage/segmentation/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/segmentation
copying skimage/segmentation/random_walker_segmentation.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/segmentation
creating build/lib.macosx-10.7-x86_64-2.7/skimage/transform
copying skimage/transform/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/transform
copying skimage/transform/_warp.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/transform
copying skimage/transform/_warp_zoo.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/transform
copying skimage/transform/finite_radon_transform.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/transform
copying skimage/transform/hough_transform.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/transform
copying skimage/transform/integral.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/transform
copying skimage/transform/project.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/transform
copying skimage/transform/radon_transform.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/transform
copying skimage/transform/setup.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/transform
creating build/lib.macosx-10.7-x86_64-2.7/skimage/util
copying skimage/util/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/util
copying skimage/util/dtype.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/util
copying skimage/util/montage.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/util
copying skimage/util/shape.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/util
creating build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/__init__.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/fits_plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/freeimage_plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/gdal_plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/gtk_plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/matplotlib_plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/null_plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/pil_plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/q_color_mixer.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/q_histogram.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/qt_plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/skivi.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/test_plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/tifffile_plugin.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
copying skimage/io/_plugins/util.py -> build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'skimage.graph._spath' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
creating build/temp.macosx-10.7-x86_64-2.7
creating build/temp.macosx-10.7-x86_64-2.7/skimage
creating build/temp.macosx-10.7-x86_64-2.7/skimage/graph
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/graph/_spath.c
In file included from skimage/graph/_spath.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/graph/_spath.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
skimage/graph/_spath.c:1370:12: warning: unused function '__pyx_pw_5numpy_7ndarray_1__getbuffer__' [-Wunused-function]
static int __pyx_pw_5numpy_7ndarray_1__getbuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags) {
^
skimage/graph/_spath.c:2186:13: warning: unused function '__pyx_pw_5numpy_7ndarray_3__releasebuffer__' [-Wunused-function]
static void __pyx_pw_5numpy_7ndarray_3__releasebuffer__(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info) {
^
4 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/graph/_spath.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/graph/_spath.so
building 'skimage.graph._mcp' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/graph/_mcp.c
In file included from skimage/graph/_mcp.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/graph/_mcp.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/graph/_mcp.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/graph/_mcp.so
building 'skimage.graph.heap' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/graph/heap.c
skimage/graph/heap.c:2371:15: warning: explicitly assigning a variable of type '__pyx_t_7skimage_5graph_4heap_INDEX_T' (aka 'long') to itself [-Wself-assign]
__pyx_v_i = __pyx_v_i;
~~~~~~~~~ ^ ~~~~~~~~~
1 warning generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/graph/heap.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/graph/heap.so
building 'skimage.io._plugins._colormixer' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
creating build/temp.macosx-10.7-x86_64-2.7/skimage/io
creating build/temp.macosx-10.7-x86_64-2.7/skimage/io/_plugins
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/io/_plugins/_colormixer.c
In file included from skimage/io/_plugins/_colormixer.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/io/_plugins/_colormixer.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/io/_plugins/_colormixer.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/_colormixer.so
building 'skimage.io._plugins._histograms' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/io/_plugins/_histograms.c
In file included from skimage/io/_plugins/_histograms.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/io/_plugins/_histograms.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/io/_plugins/_histograms.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/_histograms.so
building 'skimage.morphology.ccomp' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
creating build/temp.macosx-10.7-x86_64-2.7/skimage/morphology
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/morphology/ccomp.c
In file included from skimage/morphology/ccomp.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/morphology/ccomp.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/morphology/ccomp.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/ccomp.so
building 'skimage.morphology.cmorph' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/morphology/cmorph.c
In file included from skimage/morphology/cmorph.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/morphology/cmorph.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/morphology/cmorph.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/cmorph.so
building 'skimage.morphology._watershed' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/morphology/_watershed.c
In file included from skimage/morphology/_watershed.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
1 warning generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/morphology/_watershed.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/_watershed.so
building 'skimage.morphology._skeletonize' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/morphology/_skeletonize.c
In file included from skimage/morphology/_skeletonize.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/morphology/_skeletonize.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/morphology/_skeletonize.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/_skeletonize.so
building 'skimage.morphology._pnpoly' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/morphology/_pnpoly.c
In file included from skimage/morphology/_pnpoly.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/morphology/_pnpoly.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/morphology/_pnpoly.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/_pnpoly.so
building 'skimage.morphology._convex_hull' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/morphology/_convex_hull.c
In file included from skimage/morphology/_convex_hull.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/morphology/_convex_hull.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/morphology/_convex_hull.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/_convex_hull.so
building 'skimage.filter._ctmf' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
creating build/temp.macosx-10.7-x86_64-2.7/skimage/filter
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/filter/_ctmf.c
In file included from skimage/filter/_ctmf.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
1 warning generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/filter/_ctmf.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/filter/_ctmf.so
building 'skimage.transform._hough_transform' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
creating build/temp.macosx-10.7-x86_64-2.7/skimage/transform
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/transform/_hough_transform.c
In file included from skimage/transform/_hough_transform.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
1 warning generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/transform/_hough_transform.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/transform/_hough_transform.so
building 'skimage.transform._project' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/transform/_project.c
In file included from skimage/transform/_project.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
1 warning generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/transform/_project.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/transform/_project.so
building 'skimage.draw._draw' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
creating build/temp.macosx-10.7-x86_64-2.7/skimage/draw
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/draw/_draw.c
In file included from skimage/draw/_draw.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/draw/_draw.c:280:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/draw/_draw.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/draw/_draw.so
building 'skimage.feature._greycomatrix' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
creating build/temp.macosx-10.7-x86_64-2.7/skimage/feature
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/feature/_greycomatrix.c
In file included from skimage/feature/_greycomatrix.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/feature/_greycomatrix.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/feature/_greycomatrix.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/feature/_greycomatrix.so
building 'skimage.feature._template' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/feature/_template.c
In file included from skimage/feature/_template.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/feature/_template.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/feature/_template.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/feature/_template.so
building 'skimage.measure._find_contours' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
creating build/temp.macosx-10.7-x86_64-2.7/skimage/measure
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/measure/_find_contours.c
In file included from skimage/measure/_find_contours.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
1 warning generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/measure/_find_contours.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/measure/_find_contours.so
building 'skimage.measure._moments' extension
compiling C sources
C compiler: /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -O2 -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: skimage/measure/_moments.c
In file included from skimage/measure/_moments.c:278:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:14:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: unused function '_import_array' [-Wunused-function]
_import_array(void)
^
In file included from skimage/measure/_moments.c:279:
In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ufuncobject.h:152:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: unused function '_import_umath' [-Wunused-function]
_import_umath(void)
^
2 warnings generated.
/usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib build/temp.macosx-10.7-x86_64-2.7/skimage/measure/_moments.o -o build/lib.macosx-10.7-x86_64-2.7/skimage/measure/_moments.so
running scons
creating build/bdist.macosx-10.7-x86_64
creating build/bdist.macosx-10.7-x86_64/egg
creating build/bdist.macosx-10.7-x86_64/egg/skimage
copying build/lib.macosx-10.7-x86_64-2.7/skimage/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage
copying build/lib.macosx-10.7-x86_64-2.7/skimage/_build.py -> build/bdist.macosx-10.7-x86_64/egg/skimage
creating build/bdist.macosx-10.7-x86_64/egg/skimage/color
copying build/lib.macosx-10.7-x86_64-2.7/skimage/color/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/color
copying build/lib.macosx-10.7-x86_64-2.7/skimage/color/colorconv.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/color
creating build/bdist.macosx-10.7-x86_64/egg/skimage/data
copying build/lib.macosx-10.7-x86_64-2.7/skimage/data/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/data
creating build/bdist.macosx-10.7-x86_64/egg/skimage/draw
copying build/lib.macosx-10.7-x86_64-2.7/skimage/draw/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/draw
copying build/lib.macosx-10.7-x86_64-2.7/skimage/draw/_draw.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/draw
copying build/lib.macosx-10.7-x86_64-2.7/skimage/draw/draw.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/draw
copying build/lib.macosx-10.7-x86_64-2.7/skimage/draw/setup.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/draw
creating build/bdist.macosx-10.7-x86_64/egg/skimage/exposure
copying build/lib.macosx-10.7-x86_64-2.7/skimage/exposure/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/exposure
copying build/lib.macosx-10.7-x86_64-2.7/skimage/exposure/exposure.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/exposure
creating build/bdist.macosx-10.7-x86_64/egg/skimage/feature
copying build/lib.macosx-10.7-x86_64-2.7/skimage/feature/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature
copying build/lib.macosx-10.7-x86_64-2.7/skimage/feature/_greycomatrix.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature
copying build/lib.macosx-10.7-x86_64-2.7/skimage/feature/_template.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature
copying build/lib.macosx-10.7-x86_64-2.7/skimage/feature/greycomatrix.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature
copying build/lib.macosx-10.7-x86_64-2.7/skimage/feature/harris.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature
copying build/lib.macosx-10.7-x86_64-2.7/skimage/feature/hog.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature
copying build/lib.macosx-10.7-x86_64-2.7/skimage/feature/peak.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature
copying build/lib.macosx-10.7-x86_64-2.7/skimage/feature/setup.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature
copying build/lib.macosx-10.7-x86_64-2.7/skimage/feature/template.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature
creating build/bdist.macosx-10.7-x86_64/egg/skimage/filter
copying build/lib.macosx-10.7-x86_64-2.7/skimage/filter/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter
copying build/lib.macosx-10.7-x86_64-2.7/skimage/filter/_ctmf.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter
copying build/lib.macosx-10.7-x86_64-2.7/skimage/filter/canny.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter
copying build/lib.macosx-10.7-x86_64-2.7/skimage/filter/ctmf.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter
copying build/lib.macosx-10.7-x86_64-2.7/skimage/filter/edges.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter
copying build/lib.macosx-10.7-x86_64-2.7/skimage/filter/lpi_filter.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter
copying build/lib.macosx-10.7-x86_64-2.7/skimage/filter/rank_order.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter
copying build/lib.macosx-10.7-x86_64-2.7/skimage/filter/setup.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter
copying build/lib.macosx-10.7-x86_64-2.7/skimage/filter/thresholding.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter
copying build/lib.macosx-10.7-x86_64-2.7/skimage/filter/tv_denoise.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter
creating build/bdist.macosx-10.7-x86_64/egg/skimage/graph
copying build/lib.macosx-10.7-x86_64-2.7/skimage/graph/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/graph
copying build/lib.macosx-10.7-x86_64-2.7/skimage/graph/_mcp.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/graph
copying build/lib.macosx-10.7-x86_64-2.7/skimage/graph/_spath.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/graph
copying build/lib.macosx-10.7-x86_64-2.7/skimage/graph/heap.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/graph
copying build/lib.macosx-10.7-x86_64-2.7/skimage/graph/mcp.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/graph
copying build/lib.macosx-10.7-x86_64-2.7/skimage/graph/setup.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/graph
copying build/lib.macosx-10.7-x86_64-2.7/skimage/graph/spath.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/graph
creating build/bdist.macosx-10.7-x86_64/egg/skimage/io
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_io.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io
creating build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/_colormixer.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/_histograms.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/fits_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/freeimage_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/gdal_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/gtk_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/matplotlib_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/null_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/pil_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/q_color_mixer.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/q_histogram.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/qt_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/skivi.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/test_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/tifffile_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/_plugins/util.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/collection.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/setup.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/sift.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io
copying build/lib.macosx-10.7-x86_64-2.7/skimage/io/video.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io
creating build/bdist.macosx-10.7-x86_64/egg/skimage/measure
copying build/lib.macosx-10.7-x86_64-2.7/skimage/measure/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/measure
copying build/lib.macosx-10.7-x86_64-2.7/skimage/measure/_find_contours.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/measure
copying build/lib.macosx-10.7-x86_64-2.7/skimage/measure/_moments.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/measure
copying build/lib.macosx-10.7-x86_64-2.7/skimage/measure/_regionprops.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/measure
copying build/lib.macosx-10.7-x86_64-2.7/skimage/measure/_structural_similarity.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/measure
copying build/lib.macosx-10.7-x86_64-2.7/skimage/measure/find_contours.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/measure
copying build/lib.macosx-10.7-x86_64-2.7/skimage/measure/setup.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/measure
creating build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/_convex_hull.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/_pnpoly.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/_skeletonize.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/_watershed.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/ccomp.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/cmorph.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/convex_hull.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/grey.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/selem.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/setup.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/skeletonize.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
copying build/lib.macosx-10.7-x86_64-2.7/skimage/morphology/watershed.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology
creating build/bdist.macosx-10.7-x86_64/egg/skimage/scripts
copying build/lib.macosx-10.7-x86_64-2.7/skimage/scripts/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/scripts
copying build/lib.macosx-10.7-x86_64-2.7/skimage/scripts/skivi.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/scripts
creating build/bdist.macosx-10.7-x86_64/egg/skimage/segmentation
copying build/lib.macosx-10.7-x86_64-2.7/skimage/segmentation/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/segmentation
copying build/lib.macosx-10.7-x86_64-2.7/skimage/segmentation/random_walker_segmentation.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/segmentation
copying build/lib.macosx-10.7-x86_64-2.7/skimage/setup.py -> build/bdist.macosx-10.7-x86_64/egg/skimage
creating build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/_hough_transform.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/_project.so -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/_warp.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/_warp_zoo.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/finite_radon_transform.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/hough_transform.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/integral.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/project.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/radon_transform.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
copying build/lib.macosx-10.7-x86_64-2.7/skimage/transform/setup.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform
creating build/bdist.macosx-10.7-x86_64/egg/skimage/util
copying build/lib.macosx-10.7-x86_64-2.7/skimage/util/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/util
copying build/lib.macosx-10.7-x86_64-2.7/skimage/util/dtype.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/util
copying build/lib.macosx-10.7-x86_64-2.7/skimage/util/montage.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/util
copying build/lib.macosx-10.7-x86_64-2.7/skimage/util/shape.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/util
copying build/lib.macosx-10.7-x86_64-2.7/skimage/version.py -> build/bdist.macosx-10.7-x86_64/egg/skimage
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/_build.py to _build.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/color/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/color/colorconv.py to colorconv.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/data/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/draw/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/draw/draw.py to draw.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/draw/setup.py to setup.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/exposure/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/exposure/exposure.py to exposure.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/feature/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/feature/greycomatrix.py to greycomatrix.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/feature/harris.py to harris.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/feature/hog.py to hog.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/feature/peak.py to peak.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/feature/setup.py to setup.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/feature/template.py to template.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/filter/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/filter/canny.py to canny.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/filter/ctmf.py to ctmf.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/filter/edges.py to edges.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/filter/lpi_filter.py to lpi_filter.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/filter/rank_order.py to rank_order.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/filter/setup.py to setup.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/filter/thresholding.py to thresholding.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/filter/tv_denoise.py to tv_denoise.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/graph/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/graph/mcp.py to mcp.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/graph/setup.py to setup.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/graph/spath.py to spath.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_io.py to _io.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/fits_plugin.py to fits_plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/freeimage_plugin.py to freeimage_plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/gdal_plugin.py to gdal_plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/gtk_plugin.py to gtk_plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/matplotlib_plugin.py to matplotlib_plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/null_plugin.py to null_plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/pil_plugin.py to pil_plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/plugin.py to plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/q_color_mixer.py to q_color_mixer.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/q_histogram.py to q_histogram.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/qt_plugin.py to qt_plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/skivi.py to skivi.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/test_plugin.py to test_plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/tifffile_plugin.py to tifffile_plugin.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/util.py to util.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/collection.py to collection.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/setup.py to setup.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/sift.py to sift.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/video.py to video.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/measure/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/measure/_regionprops.py to _regionprops.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/measure/_structural_similarity.py to _structural_similarity.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/measure/find_contours.py to find_contours.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/measure/setup.py to setup.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/convex_hull.py to convex_hull.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/grey.py to grey.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/selem.py to selem.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/setup.py to setup.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/skeletonize.py to skeletonize.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/watershed.py to watershed.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/scripts/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/scripts/skivi.py to skivi.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/segmentation/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/segmentation/random_walker_segmentation.py to random_walker_segmentation.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/setup.py to setup.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/_warp.py to _warp.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/_warp_zoo.py to _warp_zoo.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/finite_radon_transform.py to finite_radon_transform.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/hough_transform.py to hough_transform.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/integral.py to integral.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/project.py to project.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/radon_transform.py to radon_transform.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/setup.py to setup.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/util/__init__.py to __init__.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/util/dtype.py to dtype.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/util/montage.py to montage.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/util/shape.py to shape.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/version.py to version.pyc
creating stub loader for skimage/graph/_spath.so
creating stub loader for skimage/graph/_mcp.so
creating stub loader for skimage/graph/heap.so
creating stub loader for skimage/io/_plugins/_colormixer.so
creating stub loader for skimage/io/_plugins/_histograms.so
creating stub loader for skimage/morphology/ccomp.so
creating stub loader for skimage/morphology/cmorph.so
creating stub loader for skimage/morphology/_watershed.so
creating stub loader for skimage/morphology/_skeletonize.so
creating stub loader for skimage/morphology/_pnpoly.so
creating stub loader for skimage/morphology/_convex_hull.so
creating stub loader for skimage/filter/_ctmf.so
creating stub loader for skimage/transform/_hough_transform.so
creating stub loader for skimage/transform/_project.so
creating stub loader for skimage/draw/_draw.so
creating stub loader for skimage/feature/_greycomatrix.so
creating stub loader for skimage/feature/_template.so
creating stub loader for skimage/measure/_find_contours.so
creating stub loader for skimage/measure/_moments.so
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/graph/_spath.py to _spath.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/graph/_mcp.py to _mcp.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/graph/heap.py to heap.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/_colormixer.py to _colormixer.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins/_histograms.py to _histograms.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/ccomp.py to ccomp.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/cmorph.py to cmorph.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/_watershed.py to _watershed.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/_skeletonize.py to _skeletonize.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/_pnpoly.py to _pnpoly.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/_convex_hull.py to _convex_hull.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/filter/_ctmf.py to _ctmf.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/_hough_transform.py to _hough_transform.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/transform/_project.py to _project.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/draw/_draw.py to _draw.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/feature/_greycomatrix.py to _greycomatrix.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/feature/_template.py to _template.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/measure/_find_contours.py to _find_contours.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/skimage/measure/_moments.py to _moments.pyc
installing package data to build/bdist.macosx-10.7-x86_64/egg
running install_data
copying skimage/io/_plugins/pil_plugin.ini -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying skimage/io/_plugins/null_plugin.ini -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying skimage/io/_plugins/gtk_plugin.ini -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying skimage/io/_plugins/gdal_plugin.ini -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying skimage/io/_plugins/tifffile_plugin.ini -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying skimage/io/_plugins/freeimage_plugin.ini -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying skimage/io/_plugins/qt_plugin.ini -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying skimage/io/_plugins/test_plugin.ini -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying skimage/io/_plugins/matplotlib_plugin.ini -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
copying skimage/io/_plugins/fits_plugin.ini -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/_plugins
creating build/bdist.macosx-10.7-x86_64/egg/skimage/data/tests
copying skimage/data/tests/test_data.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/tests/
copying skimage/data/disk-open-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/disk-erode-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/disk-bothat-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/disk-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/page.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/diamond-open-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/diamond-dilate-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/camera.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/disk-close-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/checker_bilevel.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/lena_RGB_U8.npy -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/multi.fits -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/moon.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/multipage.tif -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/diamond-erode-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/color.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/diamond-bothat-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/chessboard_GRAY_U8.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/lena_RGB_U8.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/text.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/chessboard_GRAY_U8.npy -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/lena.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/lenagray.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/disk-tophat-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/chessboard_GRAY_U16B.tif -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/chessboard_RGB.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/diamond-close-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/bw_text.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/diamond-tophat-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/coins.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/disk-dilate-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/palette_color.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/simple.fits -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/diamond-matlab-output.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/lena_GRAY_U8.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/phantom.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/lena_GRAY_U8.npy -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/chessboard_GRAY.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/cvCalibrateCamera2TestData.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/bw_text_skeleton.npy -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/palette_gray.png -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/chessboard_RGB_U8.npz -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/chessboard_RGB_U8.npy -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
copying skimage/data/chessboard_GRAY_U16.tif -> build/bdist.macosx-10.7-x86_64/egg/skimage/data/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/transform/tests
copying skimage/transform/tests/test_integral.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform/tests/
copying skimage/transform/tests/test_finite_radon_transform.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform/tests/
copying skimage/transform/tests/test_hough_transform.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform/tests/
copying skimage/transform/tests/test_project.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform/tests/
copying skimage/transform/tests/test_radon_transform.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform/tests/
copying skimage/transform/tests/test_swirl.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/transform/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/tests
copying skimage/morphology/tests/test_pnpoly.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/tests/
copying skimage/morphology/tests/test_convex_hull.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/tests/
copying skimage/morphology/tests/test_grey.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/tests/
copying skimage/morphology/tests/test_selem.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/tests/
copying skimage/morphology/tests/test_skeletonize.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/tests/
copying skimage/morphology/tests/test_watershed.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/tests/
copying skimage/morphology/tests/test_ccomp.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/morphology/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/measure/tests
copying skimage/measure/tests/test_structural_similarity.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/measure/tests/
copying skimage/measure/tests/test_regionprops.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/measure/tests/
copying skimage/measure/tests/test_find_contours.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/measure/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/graph/tests
copying skimage/graph/tests/test_mcp.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/graph/tests/
copying skimage/graph/tests/test_spath.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/graph/tests/
copying skimage/graph/tests/test_heap.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/graph/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/draw/tests
copying skimage/draw/tests/test_draw.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/draw/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/feature/tests
copying skimage/feature/tests/test_glcm.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature/tests/
copying skimage/feature/tests/test_peak.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature/tests/
copying skimage/feature/tests/test_harris.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature/tests/
copying skimage/feature/tests/test_hog.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature/tests/
copying skimage/feature/tests/test_template.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/feature/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/color/tests
copying skimage/color/tests/test_colorconv.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/color/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/exposure/tests
copying skimage/exposure/tests/test_exposure.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/exposure/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests
copying skimage/io/tests/test_histograms.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
copying skimage/io/tests/test_collection.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
copying skimage/io/tests/test_freeimage.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
copying skimage/io/tests/test_tifffile.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
copying skimage/io/tests/test_plugin.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
copying skimage/io/tests/test_pil.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
copying skimage/io/tests/test_colormixer.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
copying skimage/io/tests/test_sift.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
copying skimage/io/tests/test_fits.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
copying skimage/io/tests/test_plugin_util.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
copying skimage/io/tests/test_io.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/io/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/filter/tests
copying skimage/filter/tests/test_canny.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter/tests/
copying skimage/filter/tests/test_thresholding.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter/tests/
copying skimage/filter/tests/test_lpi_filter.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter/tests/
copying skimage/filter/tests/test_ctmf.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter/tests/
copying skimage/filter/tests/test_edges.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter/tests/
copying skimage/filter/tests/test_tv_denoise.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/filter/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/segmentation/tests
copying skimage/segmentation/tests/test_random_walker.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/segmentation/tests/
creating build/bdist.macosx-10.7-x86_64/egg/skimage/util/tests
copying skimage/util/tests/test_montage.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/util/tests/
copying skimage/util/tests/test_shape.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/util/tests/
copying skimage/util/tests/test_dtype.py -> build/bdist.macosx-10.7-x86_64/egg/skimage/util/tests/
running install_clib
customize UnixCCompiler
creating build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copying scikits_image.egg-info/PKG-INFO -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copying scikits_image.egg-info/SOURCES.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copying scikits_image.egg-info/dependency_links.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copying scikits_image.egg-info/entry_points.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copying scikits_image.egg-info/not-zip-safe -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copying scikits_image.egg-info/top_level.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
writing build/bdist.macosx-10.7-x86_64/egg/EGG-INFO/native_libs.txt
creating 'dist/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg' and adding 'build/bdist.macosx-10.7-x86_64/egg' to it
removing 'build/bdist.macosx-10.7-x86_64/egg' (and everything under it)
Processing scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg
creating /Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg
Extracting scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg to /Users/deil/Library/Python/2.7/lib/python/site-packages
Removing scikits-image 0.6dev from easy-install.pth file
Adding scikits-image 0.7dev to easy-install.pth file
Installing skivi script to /Users/deil/Library/Python/2.7/bin
Installed /Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg
Processing dependencies for scikits-image==0.7dev
Finished processing dependencies for scikits-image==0.7dev
christoph-deils-macbook:scikits-image deil$ cd doc/
christoph-deils-macbook:doc deil$
christoph-deils-macbook:doc deil$ make html
python tools/build_modref_templates.py
WARNING: Empty - skimage.scripts
WARNING: Empty - skimage.version
outdir:
14 files written
Build API docs...done.
Generated ./coverage_table.txt from ./coverage.csv.
sphinx-build -b html -d build/doctrees source build/html
Making output directory...
Running Sphinx v1.1.3
/Users/deil/Library/Python/2.7/lib/python/site-packages/matplotlib/__init__.py:936: UserWarning: This call to matplotlib.use() has no effect
because the the backend has already been chosen;
matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
or matplotlib.backends is imported for the first time.
if warn: warnings.warn(_use_error_msg)
loading pickled environment... not yet created
building [html]: targets for 68 source files that are out of date
updating environment: 69 added, 0 changed, 0 removed
reading sources... [100%] user_guide/tutorials
/Users/deil/code/scikits-image/doc/source/api/skimage.filter.txt:7: ERROR: Unknown directive type "inheritance-diagram".
.. inheritance-diagram:: skimage.filter
:parts: 3
[u"threshold_adaptive(image, block_size, method='gaussian', offset=0, mode='reflect', param=None)", u':module: skimage.filter', u'', u'', u'', u'Applies an adaptive threshold to an array.', u'', u'Also known as local or dynamic thresholding where the threshold value is the', u'weighted mean for the local neighborhood of a pixel subtracted by a', u'constant. Alternatively the threshold can be determined dynamically by a', u"a given function using the 'generic' method.", u'', u':Parameters:', u'', u' **image** : NxM ndarray', u'', u' Input image.', u'', u' **block_size** : int', u'', u' Uneven size of pixel neighborhood which is used to calculate the', u' threshold value (e.g. 3, 5, 7, ..., 21, ...).', u'', u" **method** : {'generic', 'gaussian', 'mean', 'median'}, optional", u'', u' Method used to determine adaptive threshold for local neighbourhood in', u' weighted mean image.', u" * 'generic': use custom function (see `param` parameter)", u" * 'gaussian': apply gaussian filter (see `param` parameter for custom", u' sigma value)', u" * 'mean': apply arithmetic mean filter", u" * 'median' apply median rank filter", u" By default the 'gaussian' method is used.", u'', u' **offset** : float, optional', u'', u' Constant subtracted from weighted mean of neighborhood to calculate', u' the local threshold value. Default offset is 0.', u'', u" **mode** : {'reflect', 'constant', 'nearest', 'mirror', 'wrap'}, optional", u'', u' The mode parameter determines how the array borders are handled, where', u" cval is the value when mode is equal to 'constant'.", u" Default is 'reflect'.", u'', u' **param** : {int, function}, optional', u'', u" Either specify sigma for 'gaussian' method or function object for", u" 'generic' method. This functions takes the flat array of local", u' neighbourhood as a single argument and returns the calculated threshold', u' for the centre pixel.', u'', u':Returns:', u'', u' **threshold** : NxM ndarray', u'', u' Thresholded binary image', u'', u'.. rubric:: References', u'', u'http://docs.opencv.org/modules/imgproc/doc/miscellaneous_transformations', u' .html?highlight=threshold#adaptivethreshold', u'', u'.. only:: latex', u'', u' ', u'', u'.. rubric:: Examples', u'', u'', u'>>> from skimage.data import camera', u'>>> image = camera()', u">>> binary_image1 = threshold_adaptive(image, 15, 'mean')", u'>>> func = lambda arr: arr.mean()', u">>> binary_image2 = threshold_adaptive(image, 15, 'generic', param=func)"]:25: ERROR: Unexpected indentation.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/filter/thresholding.py:docstring of skimage.filter.threshold_adaptive:32: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/deil/code/scikits-image/doc/source/api/skimage.graph.txt:7: ERROR: Unknown directive type "inheritance-diagram".
.. inheritance-diagram:: skimage.graph
:parts: 3
/Users/deil/code/scikits-image/doc/source/api/skimage.graph.txt:48: WARNING: toctree references unknown document u'api/skimage.graph.MCP.offsets'
/Users/deil/code/scikits-image/doc/source/api/skimage.graph.txt:55: WARNING: toctree references unknown document u'api/skimage.graph.MCP.find_costs'
/Users/deil/code/scikits-image/doc/source/api/skimage.graph.txt:55: WARNING: toctree references unknown document u'api/skimage.graph.MCP.traceback'
/Users/deil/code/scikits-image/doc/source/api/skimage.graph.txt:32: WARNING: toctree references unknown document u'api/skimage.graph.MCP_Geometric.find_costs'
/Users/deil/code/scikits-image/doc/source/api/skimage.graph.txt:32: WARNING: toctree references unknown document u'api/skimage.graph.MCP_Geometric.traceback'
/Users/deil/code/scikits-image/doc/source/api/skimage.io.txt:7: ERROR: Unknown directive type "inheritance-diagram".
.. inheritance-diagram:: skimage.io
:parts: 3
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/io/__init__.py:docstring of skimage.io:16: ERROR: Malformed table.
Text in column margin in table line 12.
========== ==============================================================
Plugin Description
---------- --------------------------------------------------------------
null Default plugin that does nothing
pil Image reading via the Python Imaging Library
qt Fast image display using the Qt library
freeimage Load images using the FreeImage library
gtk Fast image display using the GTK library
matplotlib Display or save images using Matplotlib
fits FITS image reading via PyFITS
tifffile Open and save TIFF and TIFF-based (LSM, STK, etc.) images
using tifffile.py
gdal Image reading via the GDAL Library (www.gdal.org)
========== ==============================================================
/Users/deil/code/scikits-image/doc/source/api/skimage.io.txt:78: WARNING: toctree references unknown document u'api/skimage.io.ImageCollection.files'
/Users/deil/code/scikits-image/doc/source/api/skimage.io.txt:85: WARNING: toctree references unknown document u'api/skimage.io.ImageCollection.reload'
/Users/deil/code/scikits-image/doc/source/api/skimage.io.txt:33: WARNING: toctree references unknown document u'api/skimage.io.Video.duration'
/Users/deil/code/scikits-image/doc/source/api/skimage.io.txt:33: WARNING: toctree references unknown document u'api/skimage.io.Video.frame_count'
/Users/deil/code/scikits-image/doc/source/api/skimage.io.txt:33: WARNING: toctree references unknown document u'api/skimage.io.Video.get'
/Users/deil/code/scikits-image/doc/source/api/skimage.io.txt:33: WARNING: toctree references unknown document u'api/skimage.io.Video.get_collection'
/Users/deil/code/scikits-image/doc/source/api/skimage.io.txt:33: WARNING: toctree references unknown document u'api/skimage.io.Video.get_index_frame'
/Users/deil/code/scikits-image/doc/source/api/skimage.io.txt:33: WARNING: toctree references unknown document u'api/skimage.io.Video.seek_frame'
/Users/deil/code/scikits-image/doc/source/api/skimage.io.txt:33: WARNING: toctree references unknown document u'api/skimage.io.Video.seek_time'
/Users/deil/code/scikits-image/doc/source/plots/show_collection.py:47: WARNING: image file not readable: api/../../build/plot_directive/plots/show_collection.pdf
[u"regionprops(label_image, properties=['Area', 'Centroid'], intensity_image=None)", u':module: skimage.measure', u'', u'', u'', u'Measure properties of labelled image regions.', u'', u'', u':Parameters:', u'', u' **label_image** : N x M ndarray', u'', u' Labelled input image.', u'', u" **properties** : {'all', list}", u'', u' Shape measurements to be determined for each labelled image region.', u" Default is `['Area', 'Centroid']`. The following properties can be", u' determined:', u' * Area : int', u' Number of pixels of region.', u' * BoundingBox : tuple', u' Bounding box `(min_row, min_col, max_row, max_col)`', u' * CentralMoments : 3 x 3 ndarray', u' Central moments (translation invariant) up to 3rd order.', u' mu_ji = sum{ array(x, y) * (x - x_c)^j * (y - y_c)^i }', u' where the sum is over the `x`, `y` coordinates of the region,', u" and `x_c` and `y_c` are the coordinates of the region's centroid.", u' * Centroid : array', u' Centroid coordinate tuple `(row, col)`.', u' * ConvexArea : int', u' Number of pixels of convex hull image.', u' * ConvexImage : H x J ndarray', u' Binary convex hull image which has the same size as bounding box.', u' * Eccentricity : float', u' Eccentricity of the ellipse that has the same second-moments as the', u' region. The eccentricity is the ratio of the distance between its', u' minor and major axis length. The value is between 0 and 1.', u' * EquivDiameter : float', u' The diameter of a circle with the same area as the region.', u' * EulerNumber : int', u' Euler number of region. Computed as number of objects (= 1)', u' subtracted by number of holes (8-connectivity).', u' * Extent : float', u' Ratio of pixels in the region to pixels in the total bounding box.', u' Computed as `Area / (rows*cols)`', u' * FilledArea : int', u' Number of pixels of filled region.', u' * FilledImage : H x J ndarray', u' Binary region image with filled holes which has the same size as', u' bounding box.', u' * HuMoments : tuple', u' Hu moments (translation, scale and rotation invariant).', u' * Image : H x J ndarray', u' Sliced binary region image which has the same size as bounding box.', u' * MajorAxisLength : float', u' The length of the major axis of the ellipse that has the same', u' normalized second central moments as the region.', u' * MaxIntensity: float', u' Value with the greatest intensity in the region.', u' * MeanIntensity: float', u' Value with the mean intensity in the region.', u' * MinIntensity: float', u' Value with the least intensity in the region.', u' * MinorAxisLength : float', u' The length of the minor axis of the ellipse that has the same', u' normalized second central moments as the region.', u' * Moments : 3 x 3 ndarray', u' Spatial moments up to 3rd order.', u' m_ji = sum{ array(x, y) * x^j * y^i }', u' where the sum is over the `x`, `y` coordinates of the region.', u' * NormalizedMoments : 3 x 3 ndarray', u' Normalized moments (translation and scale invariant) up to 3rd', u' order.', u' nu_ji = mu_ji / m_00^[(i+j)/2 + 1]', u' where `m_00` is the zeroth spatial moment.', u' * Orientation : float', u' Angle between the X-axis and the major axis of the ellipse that has', u' the same second-moments as the region. Ranging from `-pi/2` to', u' `-pi/2` in counter-clockwise direction.', u' * Solidity : float', u' Ratio of pixels in the region to pixels of the convex hull image.', u' * WeightedCentralMoments : 3 x 3 ndarray', u' Central moments (translation invariant) of intensity image up to 3rd', u' order.', u' wmu_ji = sum{ array(x, y) * (x - x_c)^j * (y - y_c)^i }', u' where the sum is over the `x`, `y` coordinates of the region,', u" and `x_c` and `y_c` are the coordinates of the region's centroid.", u' * WeightedCentroid : array', u' Centroid coordinate tuple `(row, col)` weighted with intensity', u' image.', u' * WeightedHuMoments : tuple', u' Hu moments (translation, scale and rotation invariant) of intensity', u' image.', u' * WeightedMoments : 3 x 3 ndarray', u' Spatial moments of intensity image up to 3rd order.', u' wm_ji = sum{ array(x, y) * x^j * y^i }', u' where the sum is over the `x`, `y` coordinates of the region.', u' * WeightedNormalizedMoments : 3 x 3 ndarray', u' Normalized moments (translation and scale invariant) of intensity', u' image up to 3rd order.', u' wnu_ji = wmu_ji / wm_00^[(i+j)/2 + 1]', u' where `wm_00` is the zeroth spatial moment (intensity-weighted', u' area).', u'', u' **intensity_image** : N x M ndarray, optional', u'', u' Intensity image with same size as labelled image. Default is None.', u'', u':Returns:', u'', u' **properties** : list of dicts', u'', u' List containing a property dict for each region. The property dicts', u" contain all the specified properties plus a 'Label' field.", u'', u'.. rubric:: References', u'', u'Wilhelm Burger, Mark Burge. Principles of Digital Image Processing: Core', u' Algorithms. Springer-Verlag, London, 2009.', u'B. J\xe4hne. Digital Image Processing. Springer-Verlag,', u' Berlin-Heidelberg, 6. edition, 2005.', u'T. H. Reiss. Recognizing Planar Objects Using Invariant Image Features,', u' from Lecture notes in computer science, p. 676. Springer, Berlin, 1993.', u'http://en.wikipedia.org/wiki/Image_moment', u'', u'.. only:: latex', u'', u' ', u'', u'.. rubric:: Examples', u'', u'', u'>>> from skimage.data import coins', u'>>> from skimage.morphology import label', u'>>> img = coins() > 110', u'>>> label_img = label(img)', u'>>> props = regionprops(label_img)', u">>> props[0]['Centroid'] # centroid of first labelled object"]:17: ERROR: Unexpected indentation.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:20: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:25: WARNING: Definition list ends without a blank line; unexpected unindent.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:69: WARNING: Definition list ends without a blank line; unexpected unindent.
[u"regionprops(label_image, properties=['Area', 'Centroid'], intensity_image=None)", u':module: skimage.measure', u'', u'', u'', u'Measure properties of labelled image regions.', u'', u'', u':Parameters:', u'', u' **label_image** : N x M ndarray', u'', u' Labelled input image.', u'', u" **properties** : {'all', list}", u'', u' Shape measurements to be determined for each labelled image region.', u" Default is `['Area', 'Centroid']`. The following properties can be", u' determined:', u' * Area : int', u' Number of pixels of region.', u' * BoundingBox : tuple', u' Bounding box `(min_row, min_col, max_row, max_col)`', u' * CentralMoments : 3 x 3 ndarray', u' Central moments (translation invariant) up to 3rd order.', u' mu_ji = sum{ array(x, y) * (x - x_c)^j * (y - y_c)^i }', u' where the sum is over the `x`, `y` coordinates of the region,', u" and `x_c` and `y_c` are the coordinates of the region's centroid.", u' * Centroid : array', u' Centroid coordinate tuple `(row, col)`.', u' * ConvexArea : int', u' Number of pixels of convex hull image.', u' * ConvexImage : H x J ndarray', u' Binary convex hull image which has the same size as bounding box.', u' * Eccentricity : float', u' Eccentricity of the ellipse that has the same second-moments as the', u' region. The eccentricity is the ratio of the distance between its', u' minor and major axis length. The value is between 0 and 1.', u' * EquivDiameter : float', u' The diameter of a circle with the same area as the region.', u' * EulerNumber : int', u' Euler number of region. Computed as number of objects (= 1)', u' subtracted by number of holes (8-connectivity).', u' * Extent : float', u' Ratio of pixels in the region to pixels in the total bounding box.', u' Computed as `Area / (rows*cols)`', u' * FilledArea : int', u' Number of pixels of filled region.', u' * FilledImage : H x J ndarray', u' Binary region image with filled holes which has the same size as', u' bounding box.', u' * HuMoments : tuple', u' Hu moments (translation, scale and rotation invariant).', u' * Image : H x J ndarray', u' Sliced binary region image which has the same size as bounding box.', u' * MajorAxisLength : float', u' The length of the major axis of the ellipse that has the same', u' normalized second central moments as the region.', u' * MaxIntensity: float', u' Value with the greatest intensity in the region.', u' * MeanIntensity: float', u' Value with the mean intensity in the region.', u' * MinIntensity: float', u' Value with the least intensity in the region.', u' * MinorAxisLength : float', u' The length of the minor axis of the ellipse that has the same', u' normalized second central moments as the region.', u' * Moments : 3 x 3 ndarray', u' Spatial moments up to 3rd order.', u' m_ji = sum{ array(x, y) * x^j * y^i }', u' where the sum is over the `x`, `y` coordinates of the region.', u' * NormalizedMoments : 3 x 3 ndarray', u' Normalized moments (translation and scale invariant) up to 3rd', u' order.', u' nu_ji = mu_ji / m_00^[(i+j)/2 + 1]', u' where `m_00` is the zeroth spatial moment.', u' * Orientation : float', u' Angle between the X-axis and the major axis of the ellipse that has', u' the same second-moments as the region. Ranging from `-pi/2` to', u' `-pi/2` in counter-clockwise direction.', u' * Solidity : float', u' Ratio of pixels in the region to pixels of the convex hull image.', u' * WeightedCentralMoments : 3 x 3 ndarray', u' Central moments (translation invariant) of intensity image up to 3rd', u' order.', u' wmu_ji = sum{ array(x, y) * (x - x_c)^j * (y - y_c)^i }', u' where the sum is over the `x`, `y` coordinates of the region,', u" and `x_c` and `y_c` are the coordinates of the region's centroid.", u' * WeightedCentroid : array', u' Centroid coordinate tuple `(row, col)` weighted with intensity', u' image.', u' * WeightedHuMoments : tuple', u' Hu moments (translation, scale and rotation invariant) of intensity', u' image.', u' * WeightedMoments : 3 x 3 ndarray', u' Spatial moments of intensity image up to 3rd order.', u' wm_ji = sum{ array(x, y) * x^j * y^i }', u' where the sum is over the `x`, `y` coordinates of the region.', u' * WeightedNormalizedMoments : 3 x 3 ndarray', u' Normalized moments (translation and scale invariant) of intensity', u' image up to 3rd order.', u' wnu_ji = wmu_ji / wm_00^[(i+j)/2 + 1]', u' where `wm_00` is the zeroth spatial moment (intensity-weighted', u' area).', u'', u' **intensity_image** : N x M ndarray, optional', u'', u' Intensity image with same size as labelled image. Default is None.', u'', u':Returns:', u'', u' **properties** : list of dicts', u'', u' List containing a property dict for each region. The property dicts', u" contain all the specified properties plus a 'Label' field.", u'', u'.. rubric:: References', u'', u'Wilhelm Burger, Mark Burge. Principles of Digital Image Processing: Core', u' Algorithms. Springer-Verlag, London, 2009.', u'B. J\xe4hne. Digital Image Processing. Springer-Verlag,', u' Berlin-Heidelberg, 6. edition, 2005.', u'T. H. Reiss. Recognizing Planar Objects Using Invariant Image Features,', u' from Lecture notes in computer science, p. 676. Springer, Berlin, 1993.', u'http://en.wikipedia.org/wiki/Image_moment', u'', u'.. only:: latex', u'', u' ', u'', u'.. rubric:: Examples', u'', u'', u'>>> from skimage.data import coins', u'>>> from skimage.morphology import label', u'>>> img = coins() > 110', u'>>> label_img = label(img)', u'>>> props = regionprops(label_img)', u">>> props[0]['Centroid'] # centroid of first labelled object"]:71: ERROR: Unexpected indentation.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:74: WARNING: Block quote ends without a blank line; unexpected unindent.
[u"regionprops(label_image, properties=['Area', 'Centroid'], intensity_image=None)", u':module: skimage.measure', u'', u'', u'', u'Measure properties of labelled image regions.', u'', u'', u':Parameters:', u'', u' **label_image** : N x M ndarray', u'', u' Labelled input image.', u'', u" **properties** : {'all', list}", u'', u' Shape measurements to be determined for each labelled image region.', u" Default is `['Area', 'Centroid']`. The following properties can be", u' determined:', u' * Area : int', u' Number of pixels of region.', u' * BoundingBox : tuple', u' Bounding box `(min_row, min_col, max_row, max_col)`', u' * CentralMoments : 3 x 3 ndarray', u' Central moments (translation invariant) up to 3rd order.', u' mu_ji = sum{ array(x, y) * (x - x_c)^j * (y - y_c)^i }', u' where the sum is over the `x`, `y` coordinates of the region,', u" and `x_c` and `y_c` are the coordinates of the region's centroid.", u' * Centroid : array', u' Centroid coordinate tuple `(row, col)`.', u' * ConvexArea : int', u' Number of pixels of convex hull image.', u' * ConvexImage : H x J ndarray', u' Binary convex hull image which has the same size as bounding box.', u' * Eccentricity : float', u' Eccentricity of the ellipse that has the same second-moments as the', u' region. The eccentricity is the ratio of the distance between its', u' minor and major axis length. The value is between 0 and 1.', u' * EquivDiameter : float', u' The diameter of a circle with the same area as the region.', u' * EulerNumber : int', u' Euler number of region. Computed as number of objects (= 1)', u' subtracted by number of holes (8-connectivity).', u' * Extent : float', u' Ratio of pixels in the region to pixels in the total bounding box.', u' Computed as `Area / (rows*cols)`', u' * FilledArea : int', u' Number of pixels of filled region.', u' * FilledImage : H x J ndarray', u' Binary region image with filled holes which has the same size as', u' bounding box.', u' * HuMoments : tuple', u' Hu moments (translation, scale and rotation invariant).', u' * Image : H x J ndarray', u' Sliced binary region image which has the same size as bounding box.', u' * MajorAxisLength : float', u' The length of the major axis of the ellipse that has the same', u' normalized second central moments as the region.', u' * MaxIntensity: float', u' Value with the greatest intensity in the region.', u' * MeanIntensity: float', u' Value with the mean intensity in the region.', u' * MinIntensity: float', u' Value with the least intensity in the region.', u' * MinorAxisLength : float', u' The length of the minor axis of the ellipse that has the same', u' normalized second central moments as the region.', u' * Moments : 3 x 3 ndarray', u' Spatial moments up to 3rd order.', u' m_ji = sum{ array(x, y) * x^j * y^i }', u' where the sum is over the `x`, `y` coordinates of the region.', u' * NormalizedMoments : 3 x 3 ndarray', u' Normalized moments (translation and scale invariant) up to 3rd', u' order.', u' nu_ji = mu_ji / m_00^[(i+j)/2 + 1]', u' where `m_00` is the zeroth spatial moment.', u' * Orientation : float', u' Angle between the X-axis and the major axis of the ellipse that has', u' the same second-moments as the region. Ranging from `-pi/2` to', u' `-pi/2` in counter-clockwise direction.', u' * Solidity : float', u' Ratio of pixels in the region to pixels of the convex hull image.', u' * WeightedCentralMoments : 3 x 3 ndarray', u' Central moments (translation invariant) of intensity image up to 3rd', u' order.', u' wmu_ji = sum{ array(x, y) * (x - x_c)^j * (y - y_c)^i }', u' where the sum is over the `x`, `y` coordinates of the region,', u" and `x_c` and `y_c` are the coordinates of the region's centroid.", u' * WeightedCentroid : array', u' Centroid coordinate tuple `(row, col)` weighted with intensity', u' image.', u' * WeightedHuMoments : tuple', u' Hu moments (translation, scale and rotation invariant) of intensity', u' image.', u' * WeightedMoments : 3 x 3 ndarray', u' Spatial moments of intensity image up to 3rd order.', u' wm_ji = sum{ array(x, y) * x^j * y^i }', u' where the sum is over the `x`, `y` coordinates of the region.', u' * WeightedNormalizedMoments : 3 x 3 ndarray', u' Normalized moments (translation and scale invariant) of intensity', u' image up to 3rd order.', u' wnu_ji = wmu_ji / wm_00^[(i+j)/2 + 1]', u' where `wm_00` is the zeroth spatial moment (intensity-weighted', u' area).', u'', u' **intensity_image** : N x M ndarray, optional', u'', u' Intensity image with same size as labelled image. Default is None.', u'', u':Returns:', u'', u' **properties** : list of dicts', u'', u' List containing a property dict for each region. The property dicts', u" contain all the specified properties plus a 'Label' field.", u'', u'.. rubric:: References', u'', u'Wilhelm Burger, Mark Burge. Principles of Digital Image Processing: Core', u' Algorithms. Springer-Verlag, London, 2009.', u'B. J\xe4hne. Digital Image Processing. Springer-Verlag,', u' Berlin-Heidelberg, 6. edition, 2005.', u'T. H. Reiss. Recognizing Planar Objects Using Invariant Image Features,', u' from Lecture notes in computer science, p. 676. Springer, Berlin, 1993.', u'http://en.wikipedia.org/wiki/Image_moment', u'', u'.. only:: latex', u'', u' ', u'', u'.. rubric:: Examples', u'', u'', u'>>> from skimage.data import coins', u'>>> from skimage.morphology import label', u'>>> img = coins() > 110', u'>>> label_img = label(img)', u'>>> props = regionprops(label_img)', u">>> props[0]['Centroid'] # centroid of first labelled object"]:82: ERROR: Unexpected indentation.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:85: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:96: WARNING: Definition list ends without a blank line; unexpected unindent.
[u"regionprops(label_image, properties=['Area', 'Centroid'], intensity_image=None)", u':module: skimage.measure', u'', u'', u'', u'Measure properties of labelled image regions.', u'', u'', u':Parameters:', u'', u' **label_image** : N x M ndarray', u'', u' Labelled input image.', u'', u" **properties** : {'all', list}", u'', u' Shape measurements to be determined for each labelled image region.', u" Default is `['Area', 'Centroid']`. The following properties can be", u' determined:', u' * Area : int', u' Number of pixels of region.', u' * BoundingBox : tuple', u' Bounding box `(min_row, min_col, max_row, max_col)`', u' * CentralMoments : 3 x 3 ndarray', u' Central moments (translation invariant) up to 3rd order.', u' mu_ji = sum{ array(x, y) * (x - x_c)^j * (y - y_c)^i }', u' where the sum is over the `x`, `y` coordinates of the region,', u" and `x_c` and `y_c` are the coordinates of the region's centroid.", u' * Centroid : array', u' Centroid coordinate tuple `(row, col)`.', u' * ConvexArea : int', u' Number of pixels of convex hull image.', u' * ConvexImage : H x J ndarray', u' Binary convex hull image which has the same size as bounding box.', u' * Eccentricity : float', u' Eccentricity of the ellipse that has the same second-moments as the', u' region. The eccentricity is the ratio of the distance between its', u' minor and major axis length. The value is between 0 and 1.', u' * EquivDiameter : float', u' The diameter of a circle with the same area as the region.', u' * EulerNumber : int', u' Euler number of region. Computed as number of objects (= 1)', u' subtracted by number of holes (8-connectivity).', u' * Extent : float', u' Ratio of pixels in the region to pixels in the total bounding box.', u' Computed as `Area / (rows*cols)`', u' * FilledArea : int', u' Number of pixels of filled region.', u' * FilledImage : H x J ndarray', u' Binary region image with filled holes which has the same size as', u' bounding box.', u' * HuMoments : tuple', u' Hu moments (translation, scale and rotation invariant).', u' * Image : H x J ndarray', u' Sliced binary region image which has the same size as bounding box.', u' * MajorAxisLength : float', u' The length of the major axis of the ellipse that has the same', u' normalized second central moments as the region.', u' * MaxIntensity: float', u' Value with the greatest intensity in the region.', u' * MeanIntensity: float', u' Value with the mean intensity in the region.', u' * MinIntensity: float', u' Value with the least intensity in the region.', u' * MinorAxisLength : float', u' The length of the minor axis of the ellipse that has the same', u' normalized second central moments as the region.', u' * Moments : 3 x 3 ndarray', u' Spatial moments up to 3rd order.', u' m_ji = sum{ array(x, y) * x^j * y^i }', u' where the sum is over the `x`, `y` coordinates of the region.', u' * NormalizedMoments : 3 x 3 ndarray', u' Normalized moments (translation and scale invariant) up to 3rd', u' order.', u' nu_ji = mu_ji / m_00^[(i+j)/2 + 1]', u' where `m_00` is the zeroth spatial moment.', u' * Orientation : float', u' Angle between the X-axis and the major axis of the ellipse that has', u' the same second-moments as the region. Ranging from `-pi/2` to', u' `-pi/2` in counter-clockwise direction.', u' * Solidity : float', u' Ratio of pixels in the region to pixels of the convex hull image.', u' * WeightedCentralMoments : 3 x 3 ndarray', u' Central moments (translation invariant) of intensity image up to 3rd', u' order.', u' wmu_ji = sum{ array(x, y) * (x - x_c)^j * (y - y_c)^i }', u' where the sum is over the `x`, `y` coordinates of the region,', u" and `x_c` and `y_c` are the coordinates of the region's centroid.", u' * WeightedCentroid : array', u' Centroid coordinate tuple `(row, col)` weighted with intensity', u' image.', u' * WeightedHuMoments : tuple', u' Hu moments (translation, scale and rotation invariant) of intensity', u' image.', u' * WeightedMoments : 3 x 3 ndarray', u' Spatial moments of intensity image up to 3rd order.', u' wm_ji = sum{ array(x, y) * x^j * y^i }', u' where the sum is over the `x`, `y` coordinates of the region.', u' * WeightedNormalizedMoments : 3 x 3 ndarray', u' Normalized moments (translation and scale invariant) of intensity', u' image up to 3rd order.', u' wnu_ji = wmu_ji / wm_00^[(i+j)/2 + 1]', u' where `wm_00` is the zeroth spatial moment (intensity-weighted', u' area).', u'', u' **intensity_image** : N x M ndarray, optional', u'', u' Intensity image with same size as labelled image. Default is None.', u'', u':Returns:', u'', u' **properties** : list of dicts', u'', u' List containing a property dict for each region. The property dicts', u" contain all the specified properties plus a 'Label' field.", u'', u'.. rubric:: References', u'', u'Wilhelm Burger, Mark Burge. Principles of Digital Image Processing: Core', u' Algorithms. Springer-Verlag, London, 2009.', u'B. J\xe4hne. Digital Image Processing. Springer-Verlag,', u' Berlin-Heidelberg, 6. edition, 2005.', u'T. H. Reiss. Recognizing Planar Objects Using Invariant Image Features,', u' from Lecture notes in computer science, p. 676. Springer, Berlin, 1993.', u'http://en.wikipedia.org/wiki/Image_moment', u'', u'.. only:: latex', u'', u' ', u'', u'.. rubric:: Examples', u'', u'', u'>>> from skimage.data import coins', u'>>> from skimage.morphology import label', u'>>> img = coins() > 110', u'>>> label_img = label(img)', u'>>> props = regionprops(label_img)', u">>> props[0]['Centroid'] # centroid of first labelled object"]:98: ERROR: Unexpected indentation.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:101: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:119: WARNING: Definition list ends without a blank line; unexpected unindent.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:121: WARNING: Enumerated list ends without a blank line; unexpected unindent.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:122: WARNING: Enumerated list ends without a blank line; unexpected unindent.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/measure/_regionprops.py:docstring of skimage.measure.regionprops:123: WARNING: Enumerated list ends without a blank line; unexpected unindent.
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/transform/_warp.py:docstring of skimage.transform.warp:13: WARNING: Inline strong start-string without end-string.
/Users/deil/code/scikits-image/doc/source/plots/hough_tf.py:50: WARNING: image file not readable: api/../../build/plot_directive/plots/hough_tf.pdf
/Users/deil/code/scikits-image/doc/source/index.txt:14: WARNING: toctree contains reference to nonexisting document u'api'
/Users/deil/code/scikits-image/doc/source/user_guide/tutorial_segmentation.txt:None: WARNING: image file not readable: user_guide/../../_images/plot_coins_segmentation_1.png
/Users/deil/code/scikits-image/doc/source/user_guide/tutorial_segmentation.txt:None: WARNING: image file not readable: user_guide/../../_images/plot_coins_segmentation_2.png
/Users/deil/code/scikits-image/doc/source/user_guide/tutorial_segmentation.txt:None: WARNING: image file not readable: user_guide/../../_images/plot_coins_segmentation_3.png
/Users/deil/code/scikits-image/doc/source/user_guide/tutorial_segmentation.txt:None: WARNING: image file not readable: user_guide/../../_images/plot_coins_segmentation_4.png
/Users/deil/code/scikits-image/doc/source/user_guide/tutorial_segmentation.txt:None: WARNING: image file not readable: user_guide/../../_images/plot_coins_segmentation_5.png
looking for now-outdated files... none found
pickling environment... done
checking consistency... /Users/deil/code/scikits-image/doc/source/contents.txt:: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [100%] user_guide/tutorials
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP.offsets'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP.find_costs'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP.traceback'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP_Geometric.find_costs'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP_Geometric.traceback'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.ImageCollection.files'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.ImageCollection.reload'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.duration'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.frame_count'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.get'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.get_collection'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.get_index_frame'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.seek_frame'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.seek_time'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP.offsets'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP.find_costs'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP.traceback'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP_Geometric.find_costs'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP_Geometric.traceback'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.ImageCollection.files'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.ImageCollection.reload'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.duration'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.frame_count'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.get'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.get_collection'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.get_index_frame'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.seek_frame'
<autosummary>:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.seek_time'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP.offsets'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP.find_costs'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP.traceback'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP_Geometric.find_costs'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.graph.MCP_Geometric.traceback'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.ImageCollection.files'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.ImageCollection.reload'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.duration'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.frame_count'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.get'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.get_collection'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.get_index_frame'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.seek_frame'
None:None: WARNING: toctree contains reference to nonexisting document 'api/skimage.io.Video.seek_time'
writing additional files... genindex py-modindex np-modindex search
copying images... [100%] auto_examples/images/plot_canny_1.png
copying downloadable files... [100%] /Users/deil/code/scikits-image/doc/source/auto_examples/plot_glcm.py
copying static files... done
dumping search index... done
dumping object inventory... done
build succeeded, 87 warnings.
cp -r source/plots build/html
Build finished. The HTML pages are in build/html.
christoph-deils-macbook:doc deil$ cd /tmp
christoph-deils-macbook:tmp deil$ python -c 'import skimage; skimage.test()'
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/color/colorconv.py:167: RuntimeWarning: invalid value encountered in true_divide
out_s = delta / out_v
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/color/colorconv.py:173: RuntimeWarning: invalid value encountered in true_divide
out[idx, 0] = (arr[idx, 1] - arr[idx, 2]) / delta[idx]
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/color/colorconv.py:177: RuntimeWarning: invalid value encountered in true_divide
out[idx, 0] = 2. + (arr[idx, 2] - arr[idx, 0]) / delta[idx]
/Users/deil/Library/Python/2.7/lib/python/site-packages/scikits_image-0.7dev-py2.7-macosx-10.7-x86_64.egg/skimage/color/colorconv.py:181: RuntimeWarning: invalid value encountered in true_divide
out[idx, 0] = 4. + (arr[idx, 0] - arr[idx, 1]) / delta[idx]
............................skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
................................skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to float32
skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to float32
..skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to float32
skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to float32
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to float32
skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to float32
..skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to float32
skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to float32
........................................................skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint16
.......................................................SSSSS........................S..........skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
......SSS.........................................skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
.Sskimage.dtype_converter: WARNING: Possible precision loss when converting from uint16 to uint8
skimage.dtype_converter: WARNING: Possible precision loss when converting from uint16 to uint8
.....................................................................................skimage.dtype_converter: WARNING: Possible sign loss when converting negative image of type int16 to positive image of type uint16.
skimage.dtype_converter: WARNING: Possible precision loss when converting from int16 to uint16
.skimage.dtype_converter: WARNING: Possible sign loss when converting negative image of type int16 to positive image of type uint8.
skimage.dtype_converter: WARNING: Possible precision loss when converting from int16 to uint8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float32 to int16
..skimage.dtype_converter: WARNING: Possible precision loss when converting from float32 to uint16
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float32 to uint8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from uint16 to int16
...skimage.dtype_converter: WARNING: Possible precision loss when converting from uint16 to uint8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to int16
..skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint16
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to uint8
...skimage.dtype_converter: WARNING: Possible sign loss when converting negative image of type int8 to positive image of type uint16.
skimage.dtype_converter: WARNING: Possible precision loss when converting from int8 to uint16
.skimage.dtype_converter: WARNING: Possible sign loss when converting negative image of type int8 to positive image of type uint8.
skimage.dtype_converter: WARNING: Possible precision loss when converting from int8 to uint8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from uint8 to int16
.....skimage.dtype_converter: WARNING: Possible sign loss when converting negative image of type int8 to positive image of type uint32.
skimage.dtype_converter: WARNING: Possible precision loss when converting from int8 to uint32
..skimage.dtype_converter: WARNING: Possible precision loss when converting from int32 to int8
.skimage.dtype_converter: WARNING: Possible precision loss when converting from float64 to float32
.skimage.dtype_converter: WARNING: Possible precision loss when converting from int32 to float32
........................
----------------------------------------------------------------------
Ran 410 tests in 30.589s
OK (SKIP=10)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment