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June 7, 2013 13:04
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| $ py.test barak | |
| ========================================================================================================= test session starts ========================================================================================================= | |
| platform darwin -- Python 2.7.5 -- pytest-2.3.5 | |
| plugins: cov | |
| collected 16 items / 5 errors | |
| barak/tests/test_coord.py ... | |
| barak/tests/test_interp.py ... | |
| barak/tests/test_pyvpfit.py .F | |
| barak/tests/test_utilities.py ..... | |
| barak/tests/test_virial.py . | |
| barak/tests/test_voigt.py .. | |
| =============================================================================================================== ERRORS ================================================================================================================ | |
| _____________________________________________________________________________________________ ERROR collecting barak/tests/test_absorb.py _____________________________________________________________________________________________ | |
| ../../Library/Python/2.7/lib/python/site-packages/_pytest/python.py:352: in _importtestmodule | |
| > mod = self.fspath.pyimport(ensuresyspath=True) | |
| ../../Library/Python/2.7/lib/python/site-packages/py/_path/local.py:548: in pyimport | |
| > __import__(modname) | |
| ../../Library/Python/2.7/lib/python/site-packages/_pytest/assertion/rewrite.py:159: in load_module | |
| > py.builtin.exec_(co, mod.__dict__) | |
| barak/tests/test_absorb.py:1: in <module> | |
| > from ..absorb import * | |
| barak/absorb.py:17: in <module> | |
| > from .convolve import convolve_psf | |
| barak/convolve.py:8: in <module> | |
| > from .sed import make_constant_dv_wa_scale | |
| E File "/Users/deil/code/Barak/barak/sed.py", line 98 | |
| E class Passband(object): | |
| E ^ | |
| E SyntaxError: invalid syntax | |
| ____________________________________________________________________________________________ ERROR collecting barak/tests/test_convolve.py ____________________________________________________________________________________________ | |
| ../../Library/Python/2.7/lib/python/site-packages/_pytest/python.py:352: in _importtestmodule | |
| > mod = self.fspath.pyimport(ensuresyspath=True) | |
| ../../Library/Python/2.7/lib/python/site-packages/py/_path/local.py:548: in pyimport | |
| > __import__(modname) | |
| ../../Library/Python/2.7/lib/python/site-packages/_pytest/assertion/rewrite.py:159: in load_module | |
| > py.builtin.exec_(co, mod.__dict__) | |
| barak/tests/test_convolve.py:1: in <module> | |
| > from ..convolve import * | |
| barak/convolve.py:8: in <module> | |
| > from .sed import make_constant_dv_wa_scale | |
| E File "/Users/deil/code/Barak/barak/sed.py", line 98 | |
| E class Passband(object): | |
| E ^ | |
| E SyntaxError: invalid syntax | |
| ____________________________________________________________________________________________ ERROR collecting barak/tests/test_fitcont.py _____________________________________________________________________________________________ | |
| ../../Library/Python/2.7/lib/python/site-packages/_pytest/python.py:352: in _importtestmodule | |
| > mod = self.fspath.pyimport(ensuresyspath=True) | |
| ../../Library/Python/2.7/lib/python/site-packages/py/_path/local.py:548: in pyimport | |
| > __import__(modname) | |
| ../../Library/Python/2.7/lib/python/site-packages/_pytest/assertion/rewrite.py:159: in load_module | |
| > py.builtin.exec_(co, mod.__dict__) | |
| barak/tests/test_fitcont.py:1: in <module> | |
| > from ..fitcont import * | |
| barak/fitcont.py:17: in <module> | |
| > from .convolve import convolve_psf | |
| barak/convolve.py:8: in <module> | |
| > from .sed import make_constant_dv_wa_scale | |
| E File "/Users/deil/code/Barak/barak/sed.py", line 98 | |
| E class Passband(object): | |
| E ^ | |
| E SyntaxError: invalid syntax | |
| ______________________________________________________________________________________________ ERROR collecting barak/tests/test_sed.py _______________________________________________________________________________________________ | |
| ../../Library/Python/2.7/lib/python/site-packages/_pytest/python.py:352: in _importtestmodule | |
| > mod = self.fspath.pyimport(ensuresyspath=True) | |
| ../../Library/Python/2.7/lib/python/site-packages/py/_path/local.py:548: in pyimport | |
| > __import__(modname) | |
| ../../Library/Python/2.7/lib/python/site-packages/_pytest/assertion/rewrite.py:159: in load_module | |
| > py.builtin.exec_(co, mod.__dict__) | |
| barak/tests/test_sed.py:1: in <module> | |
| > from ..sed import * | |
| E File "/Users/deil/code/Barak/barak/sed.py", line 98 | |
| E class Passband(object): | |
| E ^ | |
| E SyntaxError: invalid syntax | |
| ______________________________________________________________________________________________ ERROR collecting barak/tests/test_spec.py ______________________________________________________________________________________________ | |
| ../../Library/Python/2.7/lib/python/site-packages/_pytest/python.py:352: in _importtestmodule | |
| > mod = self.fspath.pyimport(ensuresyspath=True) | |
| ../../Library/Python/2.7/lib/python/site-packages/py/_path/local.py:548: in pyimport | |
| > __import__(modname) | |
| ../../Library/Python/2.7/lib/python/site-packages/_pytest/assertion/rewrite.py:159: in load_module | |
| > py.builtin.exec_(co, mod.__dict__) | |
| barak/tests/test_spec.py:1: in <module> | |
| > from ..spec import * | |
| barak/spec.py:21: in <module> | |
| > from .convolve import convolve_psf | |
| barak/convolve.py:8: in <module> | |
| > from .sed import make_constant_dv_wa_scale | |
| E File "/Users/deil/code/Barak/barak/sed.py", line 98 | |
| E class Passband(object): | |
| E ^ | |
| E SyntaxError: invalid syntax | |
| ============================================================================================================== FAILURES =============================================================================================================== | |
| ____________________________________________________________________________________________________________ test_calc_v90 ____________________________________________________________________________________________________________ | |
| def test_calc_v90(): | |
| > assert np.allclose(calc_v90(vp), 381.5) | |
| barak/tests/test_pyvpfit.py:49: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| vp = VpfitModel(lines, regions, stats), plot = False, z0 = None, wav0 = 1215.6701, osc = 0.4164, gam = 626500000.0 | |
| def calc_v90(vp, plot=False, z0=None, | |
| wav0=1215.6701, osc=0.4164, gam=6.265e8): | |
| """ For a vp model, we want to calculate the velocity width that | |
| contains 90% of the the total optical depth at the lya line (or | |
| perhaps it is the same regardless of which transition I take?) v_90 | |
| is defined in Prochaska and Wolfe 1997. | |
| At the moment it guesses how big a velocity range it has to | |
| calculate the optical depth over - a bit dodgy""" | |
| > from .absorb import calctau | |
| barak/pyvpfit.py:338: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| """ | |
| # p2.6+ compatibility | |
| from __future__ import division | |
| from __future__ import print_function | |
| from __future__ import unicode_literals | |
| import sys | |
| if sys.version > '3': | |
| from io import StringIO | |
| basestring = str | |
| else: | |
| from cStringIO import StringIO | |
| from .voigt import voigt | |
| > from .convolve import convolve_psf | |
| barak/absorb.py:17: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| """ Functions related to convolution.""" | |
| # py2.6+ compatibility | |
| from __future__ import division, print_function, unicode_literals | |
| import numpy as np | |
| from .utilities import nan2num | |
| > from .sed import make_constant_dv_wa_scale | |
| E File "/Users/deil/code/Barak/barak/sed.py", line 98 | |
| E class Passband(object): | |
| E ^ | |
| E SyntaxError: invalid syntax | |
| barak/convolve.py:8: SyntaxError | |
| ============================================================================================ 1 failed, 15 passed, 5 error in 2.06 seconds ============================================================================================= |
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Thanks for opening this issue! I just committed the setup.py fix.
I'm not sure what's causing the syntax errors - I can't reproduce them on my linux machine using Python 2.7.3, and a quick Google search hasn't turned up anything. I'll try to see what the problem is when I get some more free time.