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August 24, 2018 09:06
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| (iminuit-270) hfm-1804a:iminuit deil$ pypy3 -c 'import astropy; astropy.test()' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/importlib/_bootstrap.py:223: UserWarning: builtins.type size changed, may indicate binary incompatibility. Expected 872, got 416 | |
| return f(*args, **kwds) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/importlib/_bootstrap.py:223: UserWarning: builtins.type size changed, may indicate binary incompatibility. Expected 872, got 416 | |
| return f(*args, **kwds) | |
| =========================================================================================== test session starts =========================================================================================== | |
| platform darwin -- Python 3.5.3[pypy-6.0.0-final], pytest-3.7.2, py-1.5.4, pluggy-0.7.1 | |
| Running tests with Astropy version 3.0.4. | |
| Running tests in software/anaconda3/envs/iminuit-270/site-packages/astropy. | |
| Date: 2018-08-24T10:57:43 | |
| Platform: Darwin-17.7.0-x86_64-i386-64bit | |
| Executable: /Users/deil/software/anaconda3/envs/iminuit-270/bin/pypy3 | |
| Full Python Version: | |
| 3.5.3 (fdd60ed87e941677e8ea11acf9f1819466521bf2, Jun 20 2018, 15:26:30) | |
| [PyPy 6.0.0 with GCC 4.2.1 Compatible Apple LLVM 9.0.0 (clang-900.0.37)] | |
| encodings: sys: utf-8, locale: UTF-8, filesystem: utf-8 | |
| byteorder: little | |
| float info: dig: 15, mant_dig: 15 | |
| Numpy: 1.15.1 | |
| Scipy: not available | |
| Matplotlib: not available | |
| h5py: not available | |
| Pandas: not available | |
| Cython: 0.28.5 | |
| astropy_helpers: 3.0.2 | |
| Using Astropy options: remote_data: none. | |
| rootdir: /Users/deil, inifile: | |
| plugins: remotedata-0.3.0, openfiles-0.3.0, doctestplus-0.1.3, arraydiff-0.2 | |
| collected 10234 items / 16 skipped | |
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| ================================================================================================= ERRORS ================================================================================================== | |
| _________________________________________________________________________________ ERROR at setup of test_delimiter[True] __________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000112b3f7e0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000012196c840>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000112b3f7e0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _________________________________________________________________________________ ERROR at setup of test_delimiter[False] _________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000121f30960>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000119668200>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000121f30960>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _______________________________________________________________________________ ERROR at setup of test_include_names[True] ________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001206fb100>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000120acd9c0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001206fb100>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _______________________________________________________________________________ ERROR at setup of test_include_names[False] _______________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011455d040>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000125b41740>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011455d040>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _______________________________________________________________________________ ERROR at setup of test_exclude_names[True] ________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011e3fc9e0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000121e6f240>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011e3fc9e0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _______________________________________________________________________________ ERROR at setup of test_exclude_names[False] _______________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011d6275e0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000120c89600>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011d6275e0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ___________________________________________________________________________ ERROR at setup of test_include_exclude_names[True] ____________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011e85f740>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011fbf7420>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011e85f740>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ___________________________________________________________________________ ERROR at setup of test_include_exclude_names[False] ___________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000120c480a0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011f9752e0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000120c480a0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _______________________________________________________________________________ ERROR at setup of test_quoted_fields[True] ________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011ef2da00>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011e8237e0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011ef2da00>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _______________________________________________________________________________ ERROR at setup of test_quoted_fields[False] _______________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011f10f440>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000118e1f2e0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011f10f440>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ______________________________________________________________________________ ERROR at setup of test_not_enough_cols[True] _______________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000012c458da0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000012076dec0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000012c458da0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ______________________________________________________________________________ ERROR at setup of test_not_enough_cols[False] ______________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001165a3260>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000012127f1a0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001165a3260>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| __________________________________________________________________________________ ERROR at setup of test_data_end[True] __________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011f4e3760>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000012212a520>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011f4e3760>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _________________________________________________________________________________ ERROR at setup of test_data_end[False] __________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001168d95c0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000118c83a60>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001168d95c0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| __________________________________________________________________________________ ERROR at setup of test_inf_nan[True] ___________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011636edc0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000121d54a20>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011636edc0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| __________________________________________________________________________________ ERROR at setup of test_inf_nan[False] __________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000119fb0240>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011df59740>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000119fb0240>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ________________________________________________________________________________ ERROR at setup of test_fill_values[True] _________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000114a06ca0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000119d51880>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000114a06ca0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ________________________________________________________________________________ ERROR at setup of test_fill_values[False] ________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000012a6c9be0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000119ca2f20>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000012a6c9be0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _________________________________________________________________________ ERROR at setup of test_fill_include_exclude_names[True] _________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011e5e0d20>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011af27880>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011e5e0d20>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ________________________________________________________________________ ERROR at setup of test_fill_include_exclude_names[False] _________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000120f69860>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000012061be20>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000120f69860>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _________________________________________________________________________________ ERROR at setup of test_many_rows[True] __________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011fbf2f40>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011d809880>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011fbf2f40>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _________________________________________________________________________________ ERROR at setup of test_many_rows[False] _________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011e89c120>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011f1f1a60>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011e89c120>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ________________________________________________________________________________ ERROR at setup of test_many_columns[True] ________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000119801f60>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000012a768480>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000119801f60>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _______________________________________________________________________________ ERROR at setup of test_many_columns[False] ________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000120093b00>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011e61a2a0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000120093b00>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| __________________________________________________________________________________ ERROR at setup of test_read_tab[True] __________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000122101b40>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011fa134c0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000122101b40>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _________________________________________________________________________________ ERROR at setup of test_read_tab[False] __________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000012a75d880>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011a77d2e0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000012a75d880>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _____________________________________________________________________________ ERROR at setup of test_default_data_start[True] _____________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001217e7de0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000012250e160>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001217e7de0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ____________________________________________________________________________ ERROR at setup of test_default_data_start[False] _____________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000137a9dda0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000114ca62a0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000137a9dda0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ______________________________________________________________________________ ERROR at setup of test_commented_header[True] ______________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000137dbd640>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000115c4fe20>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000137dbd640>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _____________________________________________________________________________ ERROR at setup of test_commented_header[False] ______________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001380a38a0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000012aaed740>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001380a38a0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ____________________________________________________________________________________ ERROR at setup of test_rdb[True] _____________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001383ee8e0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011c10e520>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001383ee8e0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ____________________________________________________________________________________ ERROR at setup of test_rdb[False] ____________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001386f2d20>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000012a83c0c0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001386f2d20>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _________________________________________________________________________________ ERROR at setup of test_data_start[True] _________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001389e7ca0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000114801920>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001389e7ca0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ________________________________________________________________________________ ERROR at setup of test_data_start[False] _________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000138cf7380>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000120e154c0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000138cf7380>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ____________________________________________________________________________ ERROR at setup of test_quoted_empty_values[True] _____________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000013908e9a0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000114e2c840>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000013908e9a0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ____________________________________________________________________________ ERROR at setup of test_quoted_empty_values[False] ____________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000013935fa40>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011c0b6ca0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000013935fa40>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ____________________________________________________________________________ ERROR at setup of test_csv_comment_default[True] _____________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001396adc80>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011c052d40>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001396adc80>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ____________________________________________________________________________ ERROR at setup of test_csv_comment_default[False] ____________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001399779a0>, errno = 24 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011f957ba0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x00000001399779a0>, errno = 24 | |
| > ??? | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _________________________________________________________________________ ERROR at setup of test_whitespace_before_comment[True] __________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000139cefca0>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| > return func(*args, **kwargs) | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011975cd40>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000139cefca0>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| return func(*args, **kwargs) | |
| except self.Error: | |
| raise | |
| except (OSError, EnvironmentError): | |
| cls, value, tb = sys.exc_info() | |
| if not hasattr(value, 'errno'): | |
| raise | |
| __tracebackhide__ = False | |
| errno = value.errno | |
| try: | |
| if not isinstance(value, WindowsError): | |
| raise NameError | |
| except NameError: | |
| # we are not on Windows, or we got a proper OSError | |
| cls = self._geterrnoclass(errno) | |
| else: | |
| try: | |
| cls = self._geterrnoclass(_winerrnomap[errno]) | |
| except KeyError: | |
| raise value | |
| > raise cls("%s%r" % (func.__name__, args)) | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _______________________________________________________________________________ ERROR at setup of test_line_endings[False] ________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011bac7d60>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| > return func(*args, **kwargs) | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011e76d1a0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011bac7d60>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| return func(*args, **kwargs) | |
| except self.Error: | |
| raise | |
| except (OSError, EnvironmentError): | |
| cls, value, tb = sys.exc_info() | |
| if not hasattr(value, 'errno'): | |
| raise | |
| __tracebackhide__ = False | |
| errno = value.errno | |
| try: | |
| if not isinstance(value, WindowsError): | |
| raise NameError | |
| except NameError: | |
| # we are not on Windows, or we got a proper OSError | |
| cls = self._geterrnoclass(errno) | |
| else: | |
| try: | |
| cls = self._geterrnoclass(_winerrnomap[errno]) | |
| except KeyError: | |
| raise value | |
| > raise cls("%s%r" % (func.__name__, args)) | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _______________________________________________________________________________ ERROR at setup of test_store_comments[True] _______________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000114ca4d80>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| > return func(*args, **kwargs) | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000125b41880>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000114ca4d80>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| return func(*args, **kwargs) | |
| except self.Error: | |
| raise | |
| except (OSError, EnvironmentError): | |
| cls, value, tb = sys.exc_info() | |
| if not hasattr(value, 'errno'): | |
| raise | |
| __tracebackhide__ = False | |
| errno = value.errno | |
| try: | |
| if not isinstance(value, WindowsError): | |
| raise NameError | |
| except NameError: | |
| # we are not on Windows, or we got a proper OSError | |
| cls = self._geterrnoclass(errno) | |
| else: | |
| try: | |
| cls = self._geterrnoclass(_winerrnomap[errno]) | |
| except KeyError: | |
| raise value | |
| > raise cls("%s%r" % (func.__name__, args)) | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ______________________________________________________________________________ ERROR at setup of test_store_comments[False] _______________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011dfadf80>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| > return func(*args, **kwargs) | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000120f3a7a0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011dfadf80>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| return func(*args, **kwargs) | |
| except self.Error: | |
| raise | |
| except (OSError, EnvironmentError): | |
| cls, value, tb = sys.exc_info() | |
| if not hasattr(value, 'errno'): | |
| raise | |
| __tracebackhide__ = False | |
| errno = value.errno | |
| try: | |
| if not isinstance(value, WindowsError): | |
| raise NameError | |
| except NameError: | |
| # we are not on Windows, or we got a proper OSError | |
| cls = self._geterrnoclass(errno) | |
| else: | |
| try: | |
| cls = self._geterrnoclass(_winerrnomap[errno]) | |
| except KeyError: | |
| raise value | |
| > raise cls("%s%r" % (func.__name__, args)) | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ________________________________________________________________________________ ERROR at setup of test_empty_quotes[True] ________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011ae8ffe0>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| > return func(*args, **kwargs) | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000120c519c0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011ae8ffe0>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| return func(*args, **kwargs) | |
| except self.Error: | |
| raise | |
| except (OSError, EnvironmentError): | |
| cls, value, tb = sys.exc_info() | |
| if not hasattr(value, 'errno'): | |
| raise | |
| __tracebackhide__ = False | |
| errno = value.errno | |
| try: | |
| if not isinstance(value, WindowsError): | |
| raise NameError | |
| except NameError: | |
| # we are not on Windows, or we got a proper OSError | |
| cls = self._geterrnoclass(errno) | |
| else: | |
| try: | |
| cls = self._geterrnoclass(_winerrnomap[errno]) | |
| except KeyError: | |
| raise value | |
| > raise cls("%s%r" % (func.__name__, args)) | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _______________________________________________________________________________ ERROR at setup of test_empty_quotes[False] ________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000116c875e0>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| > return func(*args, **kwargs) | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011fa1cc00>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x0000000116c875e0>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| return func(*args, **kwargs) | |
| except self.Error: | |
| raise | |
| except (OSError, EnvironmentError): | |
| cls, value, tb = sys.exc_info() | |
| if not hasattr(value, 'errno'): | |
| raise | |
| __tracebackhide__ = False | |
| errno = value.errno | |
| try: | |
| if not isinstance(value, WindowsError): | |
| raise NameError | |
| except NameError: | |
| # we are not on Windows, or we got a proper OSError | |
| cls = self._geterrnoclass(errno) | |
| else: | |
| try: | |
| cls = self._geterrnoclass(_winerrnomap[errno]) | |
| except KeyError: | |
| raise value | |
| > raise cls("%s%r" % (func.__name__, args)) | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ____________________________________________________________________________ ERROR at setup of test_fast_tab_with_names[True] _____________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000012c5ba240>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| > return func(*args, **kwargs) | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x000000011e822340>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000012c5ba240>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| return func(*args, **kwargs) | |
| except self.Error: | |
| raise | |
| except (OSError, EnvironmentError): | |
| cls, value, tb = sys.exc_info() | |
| if not hasattr(value, 'errno'): | |
| raise | |
| __tracebackhide__ = False | |
| errno = value.errno | |
| try: | |
| if not isinstance(value, WindowsError): | |
| raise NameError | |
| except NameError: | |
| # we are not on Windows, or we got a proper OSError | |
| cls = self._geterrnoclass(errno) | |
| else: | |
| try: | |
| cls = self._geterrnoclass(_winerrnomap[errno]) | |
| except KeyError: | |
| raise value | |
| > raise cls("%s%r" % (func.__name__, args)) | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| ____________________________________________________________________________ ERROR at setup of test_fast_tab_with_names[False] ____________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011f394960>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| > return func(*args, **kwargs) | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x00000001163be8e0>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:878: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011f394960>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| return func(*args, **kwargs) | |
| except self.Error: | |
| raise | |
| except (OSError, EnvironmentError): | |
| cls, value, tb = sys.exc_info() | |
| if not hasattr(value, 'errno'): | |
| raise | |
| __tracebackhide__ = False | |
| errno = value.errno | |
| try: | |
| if not isinstance(value, WindowsError): | |
| raise NameError | |
| except NameError: | |
| # we are not on Windows, or we got a proper OSError | |
| cls = self._geterrnoclass(errno) | |
| else: | |
| try: | |
| cls = self._geterrnoclass(_winerrnomap[errno]) | |
| except KeyError: | |
| raise value | |
| > raise cls("%s%r" % (func.__name__, args)) | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| __________________________________________________________________________________ ERROR at setup of test_write_generic ___________________________________________________________________________________ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011bc0b8a0>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| > return func(*args, **kwargs) | |
| E OSError: [Errno 24] Too many open files: '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:66: OSError | |
| During handling of the above exception, another exception occurred: | |
| self = <CallInfo when='setup' exception: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',)> | |
| func = <function call_runtest_hook.<locals>.<lambda> at 0x0000000114ca6020>, when = 'setup', treat_keyboard_interrupt_as_exception = False | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:201: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:183: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:104: in pytest_runtest_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py:370: in prepare | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py:1434: in setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:295: in fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:466: in _fillfixtures | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:510: in getfixturevalue | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:533: in _get_active_fixturedef | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:604: in _compute_fixture_value | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:897: in execute | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py:258: in __call__ | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:67: in _hookexec | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py:61: in <lambda> | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:939: in pytest_fixture_setup | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/fixtures.py:800: in call_fixture_func | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:130: in tmpdir | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/tmpdir.py:41: in mktemp | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:856: in make_numbered_dir | |
| for path in rootdir.listdir(): | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_path/local.py:387: in listdir | |
| names = py.error.checked_call(os.listdir, self.strpath) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <module 'py.error'>, func = <built-in function listdir>, args = ('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',), kwargs = {}, __tracebackhide__ = False | |
| cls = <class 'py.error.EMFILE'>, value = OSError(24, 'Too many open files'), tb = <traceback object at 0x000000011bc0b8a0>, errno = 24 | |
| def checked_call(self, func, *args, **kwargs): | |
| """ call a function and raise an errno-exception if applicable. """ | |
| __tracebackhide__ = True | |
| try: | |
| return func(*args, **kwargs) | |
| except self.Error: | |
| raise | |
| except (OSError, EnvironmentError): | |
| cls, value, tb = sys.exc_info() | |
| if not hasattr(value, 'errno'): | |
| raise | |
| __tracebackhide__ = False | |
| errno = value.errno | |
| try: | |
| if not isinstance(value, WindowsError): | |
| raise NameError | |
| except NameError: | |
| # we are not on Windows, or we got a proper OSError | |
| cls = self._geterrnoclass(errno) | |
| else: | |
| try: | |
| cls = self._geterrnoclass(_winerrnomap[errno]) | |
| except KeyError: | |
| raise value | |
| > raise cls("%s%r" % (func.__name__, args)) | |
| E py.error.EMFILE: [Too many open files]: listdir('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540',) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/py/_error.py:86: EMFILE | |
| _____________________________________________________________________________________ ERROR at setup of test_bst_add ______________________________________________________________________________________ | |
| @pytest.fixture | |
| def bst(): | |
| > return tree() | |
| E _pytest.deprecated.RemovedInPytest4Warning: Fixture tree called directly. Fixtures are not meant to be called directly, are created automatically when test functions request them as parameters. See https://docs.pytest.org/en/latest/fixture.html for more information. | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/table/tests/test_bst.py:33: RemovedInPytest4Warning | |
| __________________________________________________________________________________ ERROR at setup of test_bst_dimensions __________________________________________________________________________________ | |
| @pytest.fixture | |
| def bst(): | |
| > return tree() | |
| E _pytest.deprecated.RemovedInPytest4Warning: Fixture tree called directly. Fixtures are not meant to be called directly, are created automatically when test functions request them as parameters. See https://docs.pytest.org/en/latest/fixture.html for more information. | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/table/tests/test_bst.py:33: RemovedInPytest4Warning | |
| ___________________________________________________________________________________ ERROR at setup of test_bst_traverse ___________________________________________________________________________________ | |
| @pytest.fixture | |
| def bst(): | |
| > return tree() | |
| E _pytest.deprecated.RemovedInPytest4Warning: Fixture tree called directly. Fixtures are not meant to be called directly, are created automatically when test functions request them as parameters. See https://docs.pytest.org/en/latest/fixture.html for more information. | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/table/tests/test_bst.py:33: RemovedInPytest4Warning | |
| ____________________________________________________________________________________ ERROR at setup of test_bst_remove ____________________________________________________________________________________ | |
| @pytest.fixture | |
| def bst(): | |
| > return tree() | |
| E _pytest.deprecated.RemovedInPytest4Warning: Fixture tree called directly. Fixtures are not meant to be called directly, are created automatically when test functions request them as parameters. See https://docs.pytest.org/en/latest/fixture.html for more information. | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/table/tests/test_bst.py:33: RemovedInPytest4Warning | |
| __________________________________________________________________________________ ERROR at setup of test_bst_duplicate ___________________________________________________________________________________ | |
| @pytest.fixture | |
| def bst(): | |
| > return tree() | |
| E _pytest.deprecated.RemovedInPytest4Warning: Fixture tree called directly. Fixtures are not meant to be called directly, are created automatically when test functions request them as parameters. See https://docs.pytest.org/en/latest/fixture.html for more information. | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/table/tests/test_bst.py:33: RemovedInPytest4Warning | |
| ================================================================================================ FAILURES ================================================================================================= | |
| __________________________________________________________________________________________ test_conversion[True] __________________________________________________________________________________________ | |
| parallel = True | |
| read_basic = functools.partial(<function _read at 0x000000011f5416a0>, local('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000g...est-of-deil/pytest-540/test_conversion_True_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>, format='basic') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_conversion(parallel, read_basic): | |
| """ | |
| The reader should try to convert each column to ints. If this fails, the | |
| reader should try to convert to floats. Failing this, it should fall back | |
| to strings. | |
| """ | |
| text = """ | |
| A B C D E | |
| 1 a 3 4 5 | |
| 2. 1 9 10 -5.3e4 | |
| 4 2 -12 .4 six | |
| """ | |
| > table = read_basic(text, parallel=parallel) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:248: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/lib_pypy/_functools.py:80: in __call__ | |
| return self._func(*(self._args + fargs), **fkeywords) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:74: in _read | |
| 'parallel': True}, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:368: in read | |
| dat = fast_reader_rdr.read(table) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/fastbasic.py:120: in read | |
| data, comments = self.engine.read(try_int, try_float, try_string) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E OSError: [Errno 24] Too many open files | |
| astropy/io/ascii/cparser.pyx:368: OSError | |
| _________________________________________________________________________________________ test_conversion[False] __________________________________________________________________________________________ | |
| parallel = False | |
| read_basic = functools.partial(<function _read at 0x000000011f5416a0>, local('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000g...st-of-deil/pytest-540/test_conversion_False_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>, format='basic') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_conversion(parallel, read_basic): | |
| """ | |
| The reader should try to convert each column to ints. If this fails, the | |
| reader should try to convert to floats. Failing this, it should fall back | |
| to strings. | |
| """ | |
| text = """ | |
| A B C D E | |
| 1 a 3 4 5 | |
| 2. 1 9 10 -5.3e4 | |
| 4 2 -12 .4 six | |
| """ | |
| > table = read_basic(text, parallel=parallel) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:248: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib_pypy/_functools.py:80: in __call__ | |
| return self._func(*(self._args + fargs), **fkeywords) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:84: in _read | |
| t7 = ascii.read(filename, format=format, guess=False, **kwargs) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:368: in read | |
| dat = fast_reader_rdr.read(table) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.ascii.fastbasic.FastBasic object at 0x000000011fc2fb40> | |
| table = '/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540/test_conversion_False_0/table16.txt' | |
| def read(self, table): | |
| """ | |
| Read input data (file-like object, filename, list of strings, or | |
| single string) into a Table and return the result. | |
| """ | |
| if self.comment is not None and len(self.comment) != 1: | |
| raise core.ParameterError("The C reader does not support a comment regex") | |
| elif self.data_start is None: | |
| raise core.ParameterError("The C reader does not allow data_start to be None") | |
| elif self.header_start is not None and self.header_start < 0 and \ | |
| not isinstance(self, FastCommentedHeader): | |
| raise core.ParameterError("The C reader does not allow header_start to be " | |
| "negative except for commented-header files") | |
| elif self.data_start < 0: | |
| raise core.ParameterError("The C reader does not allow data_start to be negative") | |
| elif len(self.delimiter) != 1: | |
| raise core.ParameterError("The C reader only supports 1-char delimiters") | |
| elif len(self.quotechar) != 1: | |
| raise core.ParameterError("The C reader only supports a length-1 quote character") | |
| elif 'converters' in self.kwargs: | |
| raise core.ParameterError("The C reader does not support passing " | |
| "specialized converters") | |
| elif 'encoding' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the encoding parameter") | |
| elif 'Outputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Outputter parameter") | |
| elif 'Inputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Inputter parameter") | |
| elif 'data_Splitter' in self.kwargs or 'header_Splitter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use a Splitter class") | |
| self.strict_names = self.kwargs.pop('strict_names', False) | |
| fast_reader = self.kwargs.get('fast_reader', True) | |
| if not isinstance(fast_reader, dict): | |
| fast_reader = {} | |
| fast_reader.pop('enable', None) | |
| self.return_header_chars = fast_reader.pop('return_header_chars', False) | |
| self.kwargs['fast_reader'] = fast_reader | |
| self.engine = cparser.CParser(table, self.strip_whitespace_lines, | |
| self.strip_whitespace_fields, | |
| delimiter=self.delimiter, | |
| header_start=self.header_start, | |
| comment=self.comment, | |
| quotechar=self.quotechar, | |
| data_start=self.data_start, | |
| fill_extra_cols=self.fill_extra_cols, | |
| > **self.kwargs) | |
| E OSError: [Errno 24] Too many open files | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/fastbasic.py:109: OSError | |
| ____________________________________________________________________________________________ test_fast_reader _____________________________________________________________________________________________ | |
| > ??? | |
| E OSError: [Errno 24] Too many open files | |
| astropy/io/ascii/cparser.pyx:404: OSError | |
| During handling of the above exception, another exception occurred: | |
| table = 'a b c\n1 2 3\n4 5 6', guess = False, kwargs = {'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': True}, 'fill_values': [('', '0')], 'format': 'basic'} | |
| fast_reader = {'enable': 'force', 'parallel': True, 'use_fast_converter': True} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.Basic'>, 'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': True}, 'fill_values': [('', '0')]}, format = 'basic' | |
| Reader = <class 'astropy.io.ascii.basic.Basic'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| > dat = fast_reader_rdr.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:368: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.ascii.fastbasic.FastBasic object at 0x0000000136d06918>, table = 'a b c\n1 2 3\n4 5 6' | |
| def read(self, table): | |
| """ | |
| Read input data (file-like object, filename, list of strings, or | |
| single string) into a Table and return the result. | |
| """ | |
| if self.comment is not None and len(self.comment) != 1: | |
| raise core.ParameterError("The C reader does not support a comment regex") | |
| elif self.data_start is None: | |
| raise core.ParameterError("The C reader does not allow data_start to be None") | |
| elif self.header_start is not None and self.header_start < 0 and \ | |
| not isinstance(self, FastCommentedHeader): | |
| raise core.ParameterError("The C reader does not allow header_start to be " | |
| "negative except for commented-header files") | |
| elif self.data_start < 0: | |
| raise core.ParameterError("The C reader does not allow data_start to be negative") | |
| elif len(self.delimiter) != 1: | |
| raise core.ParameterError("The C reader only supports 1-char delimiters") | |
| elif len(self.quotechar) != 1: | |
| raise core.ParameterError("The C reader only supports a length-1 quote character") | |
| elif 'converters' in self.kwargs: | |
| raise core.ParameterError("The C reader does not support passing " | |
| "specialized converters") | |
| elif 'encoding' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the encoding parameter") | |
| elif 'Outputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Outputter parameter") | |
| elif 'Inputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Inputter parameter") | |
| elif 'data_Splitter' in self.kwargs or 'header_Splitter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use a Splitter class") | |
| self.strict_names = self.kwargs.pop('strict_names', False) | |
| fast_reader = self.kwargs.get('fast_reader', True) | |
| if not isinstance(fast_reader, dict): | |
| fast_reader = {} | |
| fast_reader.pop('enable', None) | |
| self.return_header_chars = fast_reader.pop('return_header_chars', False) | |
| self.kwargs['fast_reader'] = fast_reader | |
| self.engine = cparser.CParser(table, self.strip_whitespace_lines, | |
| self.strip_whitespace_fields, | |
| delimiter=self.delimiter, | |
| header_start=self.header_start, | |
| comment=self.comment, | |
| quotechar=self.quotechar, | |
| data_start=self.data_start, | |
| fill_extra_cols=self.fill_extra_cols, | |
| **self.kwargs) | |
| conversion_info = self._read_header() | |
| self.check_header() | |
| if conversion_info is not None: | |
| try_int, try_float, try_string = conversion_info | |
| else: | |
| try_int = {} | |
| try_float = {} | |
| try_string = {} | |
| with set_locale('C'): | |
| > data, comments = self.engine.read(try_int, try_float, try_string) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/fastbasic.py:120: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E astropy.io.ascii.cparser.CParserError: shared semaphore implementation required but not available: no error | |
| astropy/io/ascii/cparser.pyx:368: CParserError | |
| During handling of the above exception, another exception occurred: | |
| def test_fast_reader(): | |
| """ | |
| Make sure that ascii.read() works as expected by default and with | |
| fast_reader specified. | |
| """ | |
| text = 'a b c\n1 2 3\n4 5 6' | |
| with pytest.raises(ParameterError): # C reader can't handle regex comment | |
| ascii.read(text, format='fast_basic', guess=False, comment='##') | |
| # Enable multiprocessing and the fast converter | |
| try: | |
| ascii.read(text, format='basic', guess=False, | |
| > fast_reader={'parallel': True, 'use_fast_converter': True}) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:614: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| table = 'a b c\n1 2 3\n4 5 6', guess = False, kwargs = {'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': True}, 'fill_values': [('', '0')], 'format': 'basic'} | |
| fast_reader = {'enable': 'force', 'parallel': True, 'use_fast_converter': True} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.Basic'>, 'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': True}, 'fill_values': [('', '0')]}, format = 'basic' | |
| Reader = <class 'astropy.io.ascii.basic.Basic'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| dat = fast_reader_rdr.read(table) | |
| _read_trace.append({'kwargs': fast_kwargs, | |
| 'Reader': fast_reader_rdr.__class__, | |
| 'status': 'Success with fast reader (no guessing)'}) | |
| except (core.ParameterError, cparser.CParserError, UnicodeEncodeError) as err: | |
| # special testing value to avoid falling back on the slow reader | |
| if fast_reader['enable'] == 'force': | |
| raise core.InconsistentTableError( | |
| 'fast reader {} exception: {}' | |
| > .format(fast_reader_rdr.__class__, err)) | |
| E astropy.io.ascii.core.InconsistentTableError: fast reader <class 'astropy.io.ascii.fastbasic.FastBasic'> exception: shared semaphore implementation required but not available: no error | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:377: InconsistentTableError | |
| ________________________________________________________________________________ test_strip_line_trailing_whitespace[True] ________________________________________________________________________________ | |
| parallel = True | |
| read_basic = functools.partial(<function _read at 0x000000011f5416a0>, local('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000g...il/pytest-540/test_strip_line_trailing_white0'), Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>, format='basic') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_strip_line_trailing_whitespace(parallel, read_basic): | |
| """ | |
| Readers that strip whitespace from lines should ignore | |
| trailing whitespace after the last data value of each | |
| row. | |
| """ | |
| text = 'a b c\n1 2 \n3 4 5' | |
| with pytest.raises(CParserError) as e: | |
| ascii.read(StringIO(text), format='fast_basic', guess=False) | |
| assert 'not enough columns found in line 1' in str(e) | |
| text = 'a b c\n 1 2 3 \t \n 4 5 6 ' | |
| > table = read_basic(text, parallel=parallel) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:829: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib_pypy/_functools.py:80: in __call__ | |
| return self._func(*(self._args + fargs), **fkeywords) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:74: in _read | |
| 'parallel': True}, **kwargs) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:368: in read | |
| dat = fast_reader_rdr.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/fastbasic.py:120: in read | |
| data, comments = self.engine.read(try_int, try_float, try_string) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E OSError: [Errno 24] Too many open files | |
| astropy/io/ascii/cparser.pyx:368: OSError | |
| _________________________________________________________________________________________ test_line_endings[True] _________________________________________________________________________________________ | |
| > ??? | |
| E OSError: [Errno 24] Too many open files | |
| astropy/io/ascii/cparser.pyx:404: OSError | |
| During handling of the above exception, another exception occurred: | |
| table = 'a b c\r\n1 2 3\r\n4 5 6\r\n7 8 9\r\n\n', guess = False, kwargs = {'fast_reader': {'enable': 'force', 'parallel': True}, 'fill_values': [('', '0')], 'format': 'basic'} | |
| fast_reader = {'enable': 'force', 'parallel': True}, new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.Basic'>, 'fast_reader': {'enable': 'force', 'parallel': True}, 'fill_values': [('', '0')]} | |
| format = 'basic', Reader = <class 'astropy.io.ascii.basic.Basic'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| > dat = fast_reader_rdr.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:368: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.ascii.fastbasic.FastBasic object at 0x0000000125adf050>, table = 'a b c\r\n1 2 3\r\n4 5 6\r\n7 8 9\r\n\n' | |
| def read(self, table): | |
| """ | |
| Read input data (file-like object, filename, list of strings, or | |
| single string) into a Table and return the result. | |
| """ | |
| if self.comment is not None and len(self.comment) != 1: | |
| raise core.ParameterError("The C reader does not support a comment regex") | |
| elif self.data_start is None: | |
| raise core.ParameterError("The C reader does not allow data_start to be None") | |
| elif self.header_start is not None and self.header_start < 0 and \ | |
| not isinstance(self, FastCommentedHeader): | |
| raise core.ParameterError("The C reader does not allow header_start to be " | |
| "negative except for commented-header files") | |
| elif self.data_start < 0: | |
| raise core.ParameterError("The C reader does not allow data_start to be negative") | |
| elif len(self.delimiter) != 1: | |
| raise core.ParameterError("The C reader only supports 1-char delimiters") | |
| elif len(self.quotechar) != 1: | |
| raise core.ParameterError("The C reader only supports a length-1 quote character") | |
| elif 'converters' in self.kwargs: | |
| raise core.ParameterError("The C reader does not support passing " | |
| "specialized converters") | |
| elif 'encoding' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the encoding parameter") | |
| elif 'Outputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Outputter parameter") | |
| elif 'Inputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Inputter parameter") | |
| elif 'data_Splitter' in self.kwargs or 'header_Splitter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use a Splitter class") | |
| self.strict_names = self.kwargs.pop('strict_names', False) | |
| fast_reader = self.kwargs.get('fast_reader', True) | |
| if not isinstance(fast_reader, dict): | |
| fast_reader = {} | |
| fast_reader.pop('enable', None) | |
| self.return_header_chars = fast_reader.pop('return_header_chars', False) | |
| self.kwargs['fast_reader'] = fast_reader | |
| self.engine = cparser.CParser(table, self.strip_whitespace_lines, | |
| self.strip_whitespace_fields, | |
| delimiter=self.delimiter, | |
| header_start=self.header_start, | |
| comment=self.comment, | |
| quotechar=self.quotechar, | |
| data_start=self.data_start, | |
| fill_extra_cols=self.fill_extra_cols, | |
| **self.kwargs) | |
| conversion_info = self._read_header() | |
| self.check_header() | |
| if conversion_info is not None: | |
| try_int, try_float, try_string = conversion_info | |
| else: | |
| try_int = {} | |
| try_float = {} | |
| try_string = {} | |
| with set_locale('C'): | |
| > data, comments = self.engine.read(try_int, try_float, try_string) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/fastbasic.py:120: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E astropy.io.ascii.cparser.CParserError: shared semaphore implementation required but not available: no error | |
| astropy/io/ascii/cparser.pyx:368: CParserError | |
| During handling of the above exception, another exception occurred: | |
| parallel = True | |
| read_basic = functools.partial(<function _read at 0x000000011f5416a0>, local('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000g...t-of-deil/pytest-540/test_line_endings_True_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>, format='basic') | |
| read_commented_header = functools.partial(<function _read at 0x000000011f5416a0>, local('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000g...test_line_endings_True_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastCommentedHeader'>, format='commented_header') | |
| read_rdb = functools.partial(<function _read at 0x000000011f5416a0>, local('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000g...ytest-of-deil/pytest-540/test_line_endings_True_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastRdb'>, format='rdb') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_line_endings(parallel, read_basic, read_commented_header, read_rdb): | |
| """ | |
| Make sure the fast reader accepts CR and CR+LF | |
| as newlines. | |
| """ | |
| text = 'a b c\n1 2 3\n4 5 6\n7 8 9\n' | |
| expected = Table([[1, 4, 7], [2, 5, 8], [3, 6, 9]], names=('a', 'b', 'c')) | |
| for newline in ('\r\n', '\r'): | |
| > table = read_basic(text.replace('\n', newline), parallel=parallel) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:858: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib_pypy/_functools.py:80: in __call__ | |
| return self._func(*(self._args + fargs), **fkeywords) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:74: in _read | |
| 'parallel': True}, **kwargs) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| table = 'a b c\r\n1 2 3\r\n4 5 6\r\n7 8 9\r\n\n', guess = False, kwargs = {'fast_reader': {'enable': 'force', 'parallel': True}, 'fill_values': [('', '0')], 'format': 'basic'} | |
| fast_reader = {'enable': 'force', 'parallel': True}, new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.Basic'>, 'fast_reader': {'enable': 'force', 'parallel': True}, 'fill_values': [('', '0')]} | |
| format = 'basic', Reader = <class 'astropy.io.ascii.basic.Basic'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| dat = fast_reader_rdr.read(table) | |
| _read_trace.append({'kwargs': fast_kwargs, | |
| 'Reader': fast_reader_rdr.__class__, | |
| 'status': 'Success with fast reader (no guessing)'}) | |
| except (core.ParameterError, cparser.CParserError, UnicodeEncodeError) as err: | |
| # special testing value to avoid falling back on the slow reader | |
| if fast_reader['enable'] == 'force': | |
| raise core.InconsistentTableError( | |
| 'fast reader {} exception: {}' | |
| > .format(fast_reader_rdr.__class__, err)) | |
| E astropy.io.ascii.core.InconsistentTableError: fast reader <class 'astropy.io.ascii.fastbasic.FastBasic'> exception: shared semaphore implementation required but not available: no error | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:377: InconsistentTableError | |
| _____________________________________________________________________________________ test_data_out_of_range[True-1] ______________________________________________________________________________________ | |
| > ??? | |
| E OSError: [Errno 24] Too many open files | |
| astropy/io/ascii/cparser.pyx:404: OSError | |
| During handling of the above exception, another exception occurred: | |
| table = <_io.BytesIO object at 0x00000001191bc9f8>, guess = False | |
| kwargs = {'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': False}, 'fill_values': [('', '0')], 'format': 'no_header'} | |
| fast_reader = {'enable': 'force', 'parallel': True, 'use_fast_converter': False} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.NoHeader'>, 'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': False}, 'fill_values': [('', '0')]}, format = 'no_header' | |
| Reader = <class 'astropy.io.ascii.basic.NoHeader'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| > dat = fast_reader_rdr.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:368: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.ascii.fastbasic.FastNoHeader object at 0x000000012180cc60>, table = <_io.BytesIO object at 0x00000001191bc9f8> | |
| def read(self, table): | |
| """ | |
| Read input data (file-like object, filename, list of strings, or | |
| single string) into a Table and return the result. | |
| """ | |
| if self.comment is not None and len(self.comment) != 1: | |
| raise core.ParameterError("The C reader does not support a comment regex") | |
| elif self.data_start is None: | |
| raise core.ParameterError("The C reader does not allow data_start to be None") | |
| elif self.header_start is not None and self.header_start < 0 and \ | |
| not isinstance(self, FastCommentedHeader): | |
| raise core.ParameterError("The C reader does not allow header_start to be " | |
| "negative except for commented-header files") | |
| elif self.data_start < 0: | |
| raise core.ParameterError("The C reader does not allow data_start to be negative") | |
| elif len(self.delimiter) != 1: | |
| raise core.ParameterError("The C reader only supports 1-char delimiters") | |
| elif len(self.quotechar) != 1: | |
| raise core.ParameterError("The C reader only supports a length-1 quote character") | |
| elif 'converters' in self.kwargs: | |
| raise core.ParameterError("The C reader does not support passing " | |
| "specialized converters") | |
| elif 'encoding' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the encoding parameter") | |
| elif 'Outputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Outputter parameter") | |
| elif 'Inputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Inputter parameter") | |
| elif 'data_Splitter' in self.kwargs or 'header_Splitter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use a Splitter class") | |
| self.strict_names = self.kwargs.pop('strict_names', False) | |
| fast_reader = self.kwargs.get('fast_reader', True) | |
| if not isinstance(fast_reader, dict): | |
| fast_reader = {} | |
| fast_reader.pop('enable', None) | |
| self.return_header_chars = fast_reader.pop('return_header_chars', False) | |
| self.kwargs['fast_reader'] = fast_reader | |
| self.engine = cparser.CParser(table, self.strip_whitespace_lines, | |
| self.strip_whitespace_fields, | |
| delimiter=self.delimiter, | |
| header_start=self.header_start, | |
| comment=self.comment, | |
| quotechar=self.quotechar, | |
| data_start=self.data_start, | |
| fill_extra_cols=self.fill_extra_cols, | |
| **self.kwargs) | |
| conversion_info = self._read_header() | |
| self.check_header() | |
| if conversion_info is not None: | |
| try_int, try_float, try_string = conversion_info | |
| else: | |
| try_int = {} | |
| try_float = {} | |
| try_string = {} | |
| with set_locale('C'): | |
| > data, comments = self.engine.read(try_int, try_float, try_string) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/fastbasic.py:120: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E astropy.io.ascii.cparser.CParserError: shared semaphore implementation required but not available: no error | |
| astropy/io/ascii/cparser.pyx:368: CParserError | |
| During handling of the above exception, another exception occurred: | |
| parallel = True, reader = 1 | |
| @pytest.mark.parametrize('reader', [0, 1, 2]) | |
| # catch Windows environment since we cannot use _read() with custom fast_reader | |
| @pytest.mark.parametrize("parallel", [False, | |
| pytest.param(True, marks=pytest.mark.xfail(os.name == 'nt', reason="Multiprocessing is currently unsupported on Windows"))]) | |
| def test_data_out_of_range(parallel, reader): | |
| """ | |
| Numbers with exponents beyond float64 range (|~4.94e-324 to 1.7977e+308|) | |
| shall be returned as 0 and +-inf respectively by the C parser, just like | |
| the Python parser. | |
| Test fast converter only to nominal accuracy. | |
| """ | |
| # Python reader and strtod() are expected to return precise results | |
| rtol = 1.e-30 | |
| if reader > 1: | |
| rtol = 1.e-15 | |
| # passing fast_reader dict with parametrize does not work! | |
| if reader > 0: | |
| fast_reader = {'parallel': parallel, 'use_fast_converter': reader > 1} | |
| else: | |
| fast_reader = False | |
| if parallel: | |
| if reader < 1: | |
| pytest.skip("Multiprocessing only available in fast reader") | |
| elif TRAVIS: | |
| pytest.xfail("Multiprocessing can sometimes fail on Travis CI") | |
| fields = ['10.1E+199', '3.14e+313', '2048e+306', '0.6E-325', '-2.e345'] | |
| values = np.array([1.01e200, np.inf, np.inf, 0.0, -np.inf]) | |
| t = ascii.read(StringIO(' '.join(fields)), format='no_header', guess=False, | |
| > fast_reader=fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:986: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| table = <_io.BytesIO object at 0x00000001191bc9f8>, guess = False | |
| kwargs = {'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': False}, 'fill_values': [('', '0')], 'format': 'no_header'} | |
| fast_reader = {'enable': 'force', 'parallel': True, 'use_fast_converter': False} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.NoHeader'>, 'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': False}, 'fill_values': [('', '0')]}, format = 'no_header' | |
| Reader = <class 'astropy.io.ascii.basic.NoHeader'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| dat = fast_reader_rdr.read(table) | |
| _read_trace.append({'kwargs': fast_kwargs, | |
| 'Reader': fast_reader_rdr.__class__, | |
| 'status': 'Success with fast reader (no guessing)'}) | |
| except (core.ParameterError, cparser.CParserError, UnicodeEncodeError) as err: | |
| # special testing value to avoid falling back on the slow reader | |
| if fast_reader['enable'] == 'force': | |
| raise core.InconsistentTableError( | |
| 'fast reader {} exception: {}' | |
| > .format(fast_reader_rdr.__class__, err)) | |
| E astropy.io.ascii.core.InconsistentTableError: fast reader <class 'astropy.io.ascii.fastbasic.FastNoHeader'> exception: shared semaphore implementation required but not available: no error | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:377: InconsistentTableError | |
| _____________________________________________________________________________________ test_data_out_of_range[True-2] ______________________________________________________________________________________ | |
| > ??? | |
| E OSError: [Errno 24] Too many open files | |
| astropy/io/ascii/cparser.pyx:404: OSError | |
| During handling of the above exception, another exception occurred: | |
| table = <_io.BytesIO object at 0x000000012014e170>, guess = False | |
| kwargs = {'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': True}, 'fill_values': [('', '0')], 'format': 'no_header'} | |
| fast_reader = {'enable': 'force', 'parallel': True, 'use_fast_converter': True} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.NoHeader'>, 'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': True}, 'fill_values': [('', '0')]}, format = 'no_header' | |
| Reader = <class 'astropy.io.ascii.basic.NoHeader'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| > dat = fast_reader_rdr.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:368: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.ascii.fastbasic.FastNoHeader object at 0x000000011a0722c0>, table = <_io.BytesIO object at 0x000000012014e170> | |
| def read(self, table): | |
| """ | |
| Read input data (file-like object, filename, list of strings, or | |
| single string) into a Table and return the result. | |
| """ | |
| if self.comment is not None and len(self.comment) != 1: | |
| raise core.ParameterError("The C reader does not support a comment regex") | |
| elif self.data_start is None: | |
| raise core.ParameterError("The C reader does not allow data_start to be None") | |
| elif self.header_start is not None and self.header_start < 0 and \ | |
| not isinstance(self, FastCommentedHeader): | |
| raise core.ParameterError("The C reader does not allow header_start to be " | |
| "negative except for commented-header files") | |
| elif self.data_start < 0: | |
| raise core.ParameterError("The C reader does not allow data_start to be negative") | |
| elif len(self.delimiter) != 1: | |
| raise core.ParameterError("The C reader only supports 1-char delimiters") | |
| elif len(self.quotechar) != 1: | |
| raise core.ParameterError("The C reader only supports a length-1 quote character") | |
| elif 'converters' in self.kwargs: | |
| raise core.ParameterError("The C reader does not support passing " | |
| "specialized converters") | |
| elif 'encoding' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the encoding parameter") | |
| elif 'Outputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Outputter parameter") | |
| elif 'Inputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Inputter parameter") | |
| elif 'data_Splitter' in self.kwargs or 'header_Splitter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use a Splitter class") | |
| self.strict_names = self.kwargs.pop('strict_names', False) | |
| fast_reader = self.kwargs.get('fast_reader', True) | |
| if not isinstance(fast_reader, dict): | |
| fast_reader = {} | |
| fast_reader.pop('enable', None) | |
| self.return_header_chars = fast_reader.pop('return_header_chars', False) | |
| self.kwargs['fast_reader'] = fast_reader | |
| self.engine = cparser.CParser(table, self.strip_whitespace_lines, | |
| self.strip_whitespace_fields, | |
| delimiter=self.delimiter, | |
| header_start=self.header_start, | |
| comment=self.comment, | |
| quotechar=self.quotechar, | |
| data_start=self.data_start, | |
| fill_extra_cols=self.fill_extra_cols, | |
| **self.kwargs) | |
| conversion_info = self._read_header() | |
| self.check_header() | |
| if conversion_info is not None: | |
| try_int, try_float, try_string = conversion_info | |
| else: | |
| try_int = {} | |
| try_float = {} | |
| try_string = {} | |
| with set_locale('C'): | |
| > data, comments = self.engine.read(try_int, try_float, try_string) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/fastbasic.py:120: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E astropy.io.ascii.cparser.CParserError: shared semaphore implementation required but not available: no error | |
| astropy/io/ascii/cparser.pyx:368: CParserError | |
| During handling of the above exception, another exception occurred: | |
| parallel = True, reader = 2 | |
| @pytest.mark.parametrize('reader', [0, 1, 2]) | |
| # catch Windows environment since we cannot use _read() with custom fast_reader | |
| @pytest.mark.parametrize("parallel", [False, | |
| pytest.param(True, marks=pytest.mark.xfail(os.name == 'nt', reason="Multiprocessing is currently unsupported on Windows"))]) | |
| def test_data_out_of_range(parallel, reader): | |
| """ | |
| Numbers with exponents beyond float64 range (|~4.94e-324 to 1.7977e+308|) | |
| shall be returned as 0 and +-inf respectively by the C parser, just like | |
| the Python parser. | |
| Test fast converter only to nominal accuracy. | |
| """ | |
| # Python reader and strtod() are expected to return precise results | |
| rtol = 1.e-30 | |
| if reader > 1: | |
| rtol = 1.e-15 | |
| # passing fast_reader dict with parametrize does not work! | |
| if reader > 0: | |
| fast_reader = {'parallel': parallel, 'use_fast_converter': reader > 1} | |
| else: | |
| fast_reader = False | |
| if parallel: | |
| if reader < 1: | |
| pytest.skip("Multiprocessing only available in fast reader") | |
| elif TRAVIS: | |
| pytest.xfail("Multiprocessing can sometimes fail on Travis CI") | |
| fields = ['10.1E+199', '3.14e+313', '2048e+306', '0.6E-325', '-2.e345'] | |
| values = np.array([1.01e200, np.inf, np.inf, 0.0, -np.inf]) | |
| t = ascii.read(StringIO(' '.join(fields)), format='no_header', guess=False, | |
| > fast_reader=fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:986: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| table = <_io.BytesIO object at 0x000000012014e170>, guess = False | |
| kwargs = {'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': True}, 'fill_values': [('', '0')], 'format': 'no_header'} | |
| fast_reader = {'enable': 'force', 'parallel': True, 'use_fast_converter': True} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.NoHeader'>, 'fast_reader': {'enable': 'force', 'parallel': True, 'use_fast_converter': True}, 'fill_values': [('', '0')]}, format = 'no_header' | |
| Reader = <class 'astropy.io.ascii.basic.NoHeader'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| dat = fast_reader_rdr.read(table) | |
| _read_trace.append({'kwargs': fast_kwargs, | |
| 'Reader': fast_reader_rdr.__class__, | |
| 'status': 'Success with fast reader (no guessing)'}) | |
| except (core.ParameterError, cparser.CParserError, UnicodeEncodeError) as err: | |
| # special testing value to avoid falling back on the slow reader | |
| if fast_reader['enable'] == 'force': | |
| raise core.InconsistentTableError( | |
| 'fast reader {} exception: {}' | |
| > .format(fast_reader_rdr.__class__, err)) | |
| E astropy.io.ascii.core.InconsistentTableError: fast reader <class 'astropy.io.ascii.fastbasic.FastNoHeader'> exception: shared semaphore implementation required but not available: no error | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:377: InconsistentTableError | |
| _______________________________________________________________________________________ test_int_out_of_range[True] _______________________________________________________________________________________ | |
| > ??? | |
| E OSError: [Errno 24] Too many open files | |
| astropy/io/ascii/cparser.pyx:404: OSError | |
| During handling of the above exception, another exception occurred: | |
| table = 'P M S\n 9223372036854775806 -9223372036854775807 9223372036854775808', guess = False | |
| kwargs = {'fast_reader': {'enable': 'force', 'parallel': True}, 'fill_values': [('', '0')], 'format': 'basic'}, fast_reader = {'enable': 'force', 'parallel': True} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.Basic'>, 'fast_reader': {'enable': 'force', 'parallel': True}, 'fill_values': [('', '0')]}, format = 'basic' | |
| Reader = <class 'astropy.io.ascii.basic.Basic'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| > dat = fast_reader_rdr.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:368: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.ascii.fastbasic.FastBasic object at 0x0000000129ad6410>, table = 'P M S\n 9223372036854775806 -9223372036854775807 9223372036854775808' | |
| def read(self, table): | |
| """ | |
| Read input data (file-like object, filename, list of strings, or | |
| single string) into a Table and return the result. | |
| """ | |
| if self.comment is not None and len(self.comment) != 1: | |
| raise core.ParameterError("The C reader does not support a comment regex") | |
| elif self.data_start is None: | |
| raise core.ParameterError("The C reader does not allow data_start to be None") | |
| elif self.header_start is not None and self.header_start < 0 and \ | |
| not isinstance(self, FastCommentedHeader): | |
| raise core.ParameterError("The C reader does not allow header_start to be " | |
| "negative except for commented-header files") | |
| elif self.data_start < 0: | |
| raise core.ParameterError("The C reader does not allow data_start to be negative") | |
| elif len(self.delimiter) != 1: | |
| raise core.ParameterError("The C reader only supports 1-char delimiters") | |
| elif len(self.quotechar) != 1: | |
| raise core.ParameterError("The C reader only supports a length-1 quote character") | |
| elif 'converters' in self.kwargs: | |
| raise core.ParameterError("The C reader does not support passing " | |
| "specialized converters") | |
| elif 'encoding' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the encoding parameter") | |
| elif 'Outputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Outputter parameter") | |
| elif 'Inputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Inputter parameter") | |
| elif 'data_Splitter' in self.kwargs or 'header_Splitter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use a Splitter class") | |
| self.strict_names = self.kwargs.pop('strict_names', False) | |
| fast_reader = self.kwargs.get('fast_reader', True) | |
| if not isinstance(fast_reader, dict): | |
| fast_reader = {} | |
| fast_reader.pop('enable', None) | |
| self.return_header_chars = fast_reader.pop('return_header_chars', False) | |
| self.kwargs['fast_reader'] = fast_reader | |
| self.engine = cparser.CParser(table, self.strip_whitespace_lines, | |
| self.strip_whitespace_fields, | |
| delimiter=self.delimiter, | |
| header_start=self.header_start, | |
| comment=self.comment, | |
| quotechar=self.quotechar, | |
| data_start=self.data_start, | |
| fill_extra_cols=self.fill_extra_cols, | |
| **self.kwargs) | |
| conversion_info = self._read_header() | |
| self.check_header() | |
| if conversion_info is not None: | |
| try_int, try_float, try_string = conversion_info | |
| else: | |
| try_int = {} | |
| try_float = {} | |
| try_string = {} | |
| with set_locale('C'): | |
| > data, comments = self.engine.read(try_int, try_float, try_string) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/fastbasic.py:120: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E astropy.io.ascii.cparser.CParserError: shared semaphore implementation required but not available: no error | |
| astropy/io/ascii/cparser.pyx:368: CParserError | |
| During handling of the above exception, another exception occurred: | |
| parallel = True | |
| @pytest.mark.parametrize("parallel", [ | |
| pytest.param(True, marks=pytest.mark.xfail(os.name == 'nt', reason="Multiprocessing is currently unsupported on Windows")), | |
| False]) | |
| def test_int_out_of_range(parallel): | |
| """ | |
| Integer numbers outside int range shall be returned as string columns | |
| consistent with the standard (Python) parser (no 'upcasting' to float). | |
| """ | |
| imin = np.iinfo(int).min+1 | |
| imax = np.iinfo(int).max-1 | |
| huge = '{:d}'.format(imax+2) | |
| text = 'P M S\n {:d} {:d} {:s}'.format(imax, imin, huge) | |
| expected = Table([[imax], [imin], [huge]], names=('P', 'M', 'S')) | |
| table = ascii.read(text, format='basic', guess=False, | |
| > fast_reader={'parallel': parallel}) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:1027: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| table = 'P M S\n 9223372036854775806 -9223372036854775807 9223372036854775808', guess = False | |
| kwargs = {'fast_reader': {'enable': 'force', 'parallel': True}, 'fill_values': [('', '0')], 'format': 'basic'}, fast_reader = {'enable': 'force', 'parallel': True} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.Basic'>, 'fast_reader': {'enable': 'force', 'parallel': True}, 'fill_values': [('', '0')]}, format = 'basic' | |
| Reader = <class 'astropy.io.ascii.basic.Basic'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| dat = fast_reader_rdr.read(table) | |
| _read_trace.append({'kwargs': fast_kwargs, | |
| 'Reader': fast_reader_rdr.__class__, | |
| 'status': 'Success with fast reader (no guessing)'}) | |
| except (core.ParameterError, cparser.CParserError, UnicodeEncodeError) as err: | |
| # special testing value to avoid falling back on the slow reader | |
| if fast_reader['enable'] == 'force': | |
| raise core.InconsistentTableError( | |
| 'fast reader {} exception: {}' | |
| > .format(fast_reader_rdr.__class__, err)) | |
| E astropy.io.ascii.core.InconsistentTableError: fast reader <class 'astropy.io.ascii.fastbasic.FastBasic'> exception: shared semaphore implementation required but not available: no error | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:377: InconsistentTableError | |
| ________________________________________________________________________________________ test_fortran_reader[True] ________________________________________________________________________________________ | |
| > ??? | |
| E OSError: [Errno 24] Too many open files | |
| astropy/io/ascii/cparser.pyx:404: OSError | |
| During handling of the above exception, another exception occurred: | |
| table = 'A B C\n100.01E+99 2.0 3\n 4.2E-1 5.0E-1 0.6E4', guess = False | |
| kwargs = {'fast_reader': {'enable': 'force', 'exponent_style': 'e', 'parallel': True}, 'fill_values': [('', '0')], 'format': 'basic'} | |
| fast_reader = {'enable': 'force', 'exponent_style': 'e', 'parallel': True} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.Basic'>, 'fast_reader': {'enable': 'force', 'exponent_style': 'e', 'parallel': True}, 'fill_values': [('', '0')]}, format = 'basic' | |
| Reader = <class 'astropy.io.ascii.basic.Basic'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| > dat = fast_reader_rdr.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:368: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.ascii.fastbasic.FastBasic object at 0x000000011e521210>, table = 'A B C\n100.01E+99 2.0 3\n 4.2E-1 5.0E-1 0.6E4' | |
| def read(self, table): | |
| """ | |
| Read input data (file-like object, filename, list of strings, or | |
| single string) into a Table and return the result. | |
| """ | |
| if self.comment is not None and len(self.comment) != 1: | |
| raise core.ParameterError("The C reader does not support a comment regex") | |
| elif self.data_start is None: | |
| raise core.ParameterError("The C reader does not allow data_start to be None") | |
| elif self.header_start is not None and self.header_start < 0 and \ | |
| not isinstance(self, FastCommentedHeader): | |
| raise core.ParameterError("The C reader does not allow header_start to be " | |
| "negative except for commented-header files") | |
| elif self.data_start < 0: | |
| raise core.ParameterError("The C reader does not allow data_start to be negative") | |
| elif len(self.delimiter) != 1: | |
| raise core.ParameterError("The C reader only supports 1-char delimiters") | |
| elif len(self.quotechar) != 1: | |
| raise core.ParameterError("The C reader only supports a length-1 quote character") | |
| elif 'converters' in self.kwargs: | |
| raise core.ParameterError("The C reader does not support passing " | |
| "specialized converters") | |
| elif 'encoding' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the encoding parameter") | |
| elif 'Outputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Outputter parameter") | |
| elif 'Inputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Inputter parameter") | |
| elif 'data_Splitter' in self.kwargs or 'header_Splitter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use a Splitter class") | |
| self.strict_names = self.kwargs.pop('strict_names', False) | |
| fast_reader = self.kwargs.get('fast_reader', True) | |
| if not isinstance(fast_reader, dict): | |
| fast_reader = {} | |
| fast_reader.pop('enable', None) | |
| self.return_header_chars = fast_reader.pop('return_header_chars', False) | |
| self.kwargs['fast_reader'] = fast_reader | |
| self.engine = cparser.CParser(table, self.strip_whitespace_lines, | |
| self.strip_whitespace_fields, | |
| delimiter=self.delimiter, | |
| header_start=self.header_start, | |
| comment=self.comment, | |
| quotechar=self.quotechar, | |
| data_start=self.data_start, | |
| fill_extra_cols=self.fill_extra_cols, | |
| **self.kwargs) | |
| conversion_info = self._read_header() | |
| self.check_header() | |
| if conversion_info is not None: | |
| try_int, try_float, try_string = conversion_info | |
| else: | |
| try_int = {} | |
| try_float = {} | |
| try_string = {} | |
| with set_locale('C'): | |
| > data, comments = self.engine.read(try_int, try_float, try_string) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/fastbasic.py:120: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E astropy.io.ascii.cparser.CParserError: shared semaphore implementation required but not available: no error | |
| astropy/io/ascii/cparser.pyx:368: CParserError | |
| During handling of the above exception, another exception occurred: | |
| parallel = True | |
| @pytest.mark.parametrize("parallel", [ | |
| pytest.param(True, marks=pytest.mark.xfail(os.name == 'nt', reason="Multiprocessing is currently unsupported on Windows")), | |
| False]) | |
| def test_fortran_reader(parallel): | |
| """ | |
| Make sure that ascii.read() can read Fortran-style exponential notation | |
| using the fast_reader. | |
| """ | |
| text = 'A B C\n100.01{:s}+99 2.0 3\n 4.2{:s}-1 5.0{:s}-1 0.6{:s}4' | |
| expected = Table([[1.0001e101, 0.42], [2, 0.5], [3.0, 6000]], | |
| names=('A', 'B', 'C')) | |
| expstyles = {'e': 4*('E'), 'D': ('D', 'd', 'd', 'D'), 'Q': 2*('q', 'Q'), | |
| 'fortran': ('D', 'E', 'Q', 'd')} | |
| # C strtod (not-fast converter) can't handle Fortran exp | |
| with pytest.raises(FastOptionsError) as e: | |
| ascii.read(text.format(*(4*('D'))), format='basic', guess=False, | |
| fast_reader={'use_fast_converter': False, | |
| 'parallel': parallel, 'exponent_style': 'D'}) | |
| assert 'fast_reader: exponent_style requires use_fast_converter' in str(e) | |
| # enable multiprocessing and the fast converter | |
| # iterate over all style-exponent combinations | |
| for s, c in expstyles.items(): | |
| table = ascii.read(text.format(*c), format='basic', guess=False, | |
| fast_reader={'parallel': parallel, | |
| > 'exponent_style': s}) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:1078: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| table = 'A B C\n100.01E+99 2.0 3\n 4.2E-1 5.0E-1 0.6E4', guess = False | |
| kwargs = {'fast_reader': {'enable': 'force', 'exponent_style': 'e', 'parallel': True}, 'fill_values': [('', '0')], 'format': 'basic'} | |
| fast_reader = {'enable': 'force', 'exponent_style': 'e', 'parallel': True} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.Basic'>, 'fast_reader': {'enable': 'force', 'exponent_style': 'e', 'parallel': True}, 'fill_values': [('', '0')]}, format = 'basic' | |
| Reader = <class 'astropy.io.ascii.basic.Basic'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| dat = fast_reader_rdr.read(table) | |
| _read_trace.append({'kwargs': fast_kwargs, | |
| 'Reader': fast_reader_rdr.__class__, | |
| 'status': 'Success with fast reader (no guessing)'}) | |
| except (core.ParameterError, cparser.CParserError, UnicodeEncodeError) as err: | |
| # special testing value to avoid falling back on the slow reader | |
| if fast_reader['enable'] == 'force': | |
| raise core.InconsistentTableError( | |
| 'fast reader {} exception: {}' | |
| > .format(fast_reader_rdr.__class__, err)) | |
| E astropy.io.ascii.core.InconsistentTableError: fast reader <class 'astropy.io.ascii.fastbasic.FastBasic'> exception: shared semaphore implementation required but not available: no error | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:377: InconsistentTableError | |
| _____________________________________________________________________________________ test_fortran_invalid_exp[True] ______________________________________________________________________________________ | |
| > ??? | |
| E OSError: [Errno 24] Too many open files | |
| astropy/io/ascii/cparser.pyx:404: OSError | |
| During handling of the above exception, another exception occurred: | |
| table = <_io.BytesIO object at 0x0000000135ffa800>, guess = False | |
| kwargs = {'fast_reader': {'enable': 'force', 'exponent_style': 'A', 'parallel': True}, 'fill_values': [('', '0')], 'format': 'no_header'} | |
| fast_reader = {'enable': 'force', 'exponent_style': 'A', 'parallel': True} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.NoHeader'>, 'fast_reader': {'enable': 'force', 'exponent_style': 'A', 'parallel': True}, 'fill_values': [('', '0')]}, format = 'no_header' | |
| Reader = <class 'astropy.io.ascii.basic.NoHeader'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| > dat = fast_reader_rdr.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:368: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.ascii.fastbasic.FastNoHeader object at 0x00000001367b0a30>, table = <_io.BytesIO object at 0x0000000135ffa800> | |
| def read(self, table): | |
| """ | |
| Read input data (file-like object, filename, list of strings, or | |
| single string) into a Table and return the result. | |
| """ | |
| if self.comment is not None and len(self.comment) != 1: | |
| raise core.ParameterError("The C reader does not support a comment regex") | |
| elif self.data_start is None: | |
| raise core.ParameterError("The C reader does not allow data_start to be None") | |
| elif self.header_start is not None and self.header_start < 0 and \ | |
| not isinstance(self, FastCommentedHeader): | |
| raise core.ParameterError("The C reader does not allow header_start to be " | |
| "negative except for commented-header files") | |
| elif self.data_start < 0: | |
| raise core.ParameterError("The C reader does not allow data_start to be negative") | |
| elif len(self.delimiter) != 1: | |
| raise core.ParameterError("The C reader only supports 1-char delimiters") | |
| elif len(self.quotechar) != 1: | |
| raise core.ParameterError("The C reader only supports a length-1 quote character") | |
| elif 'converters' in self.kwargs: | |
| raise core.ParameterError("The C reader does not support passing " | |
| "specialized converters") | |
| elif 'encoding' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the encoding parameter") | |
| elif 'Outputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Outputter parameter") | |
| elif 'Inputter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use the Inputter parameter") | |
| elif 'data_Splitter' in self.kwargs or 'header_Splitter' in self.kwargs: | |
| raise core.ParameterError("The C reader does not use a Splitter class") | |
| self.strict_names = self.kwargs.pop('strict_names', False) | |
| fast_reader = self.kwargs.get('fast_reader', True) | |
| if not isinstance(fast_reader, dict): | |
| fast_reader = {} | |
| fast_reader.pop('enable', None) | |
| self.return_header_chars = fast_reader.pop('return_header_chars', False) | |
| self.kwargs['fast_reader'] = fast_reader | |
| self.engine = cparser.CParser(table, self.strip_whitespace_lines, | |
| self.strip_whitespace_fields, | |
| delimiter=self.delimiter, | |
| header_start=self.header_start, | |
| comment=self.comment, | |
| quotechar=self.quotechar, | |
| data_start=self.data_start, | |
| fill_extra_cols=self.fill_extra_cols, | |
| **self.kwargs) | |
| conversion_info = self._read_header() | |
| self.check_header() | |
| if conversion_info is not None: | |
| try_int, try_float, try_string = conversion_info | |
| else: | |
| try_int = {} | |
| try_float = {} | |
| try_string = {} | |
| with set_locale('C'): | |
| > data, comments = self.engine.read(try_int, try_float, try_string) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/fastbasic.py:120: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E astropy.io.ascii.cparser.CParserError: shared semaphore implementation required but not available: no error | |
| astropy/io/ascii/cparser.pyx:368: CParserError | |
| During handling of the above exception, another exception occurred: | |
| parallel = True | |
| @pytest.mark.parametrize("parallel", [ | |
| pytest.param(True, marks=pytest.mark.xfail(os.name == 'nt', reason="Multiprocessing is currently unsupported on Windows")), | |
| False]) | |
| def test_fortran_invalid_exp(parallel): | |
| """ | |
| Test Fortran-style exponential notation in the fast_reader with invalid | |
| exponent-like patterns (no triple-digits) to make sure they are returned | |
| as strings instead, as with the standard C parser. | |
| """ | |
| if parallel and TRAVIS: | |
| pytest.xfail("Multiprocessing can sometimes fail on Travis CI") | |
| fields = ['1.0001+1', '.42d1', '2.3+10', '0.5', '3+1001', '3000.', | |
| '2', '4.56e-2.3', '8000', '4.2-122'] | |
| values = ['1.0001+1', 4.2, '2.3+10', 0.5, '3+1001', 3.e3, | |
| 2, '4.56e-2.3', 8000, 4.2e-122] | |
| t = ascii.read(StringIO(' '.join(fields)), format='no_header', guess=False, | |
| > fast_reader={'parallel': parallel, 'exponent_style': 'A'}) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_c_reader.py:1112: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| table = <_io.BytesIO object at 0x0000000135ffa800>, guess = False | |
| kwargs = {'fast_reader': {'enable': 'force', 'exponent_style': 'A', 'parallel': True}, 'fill_values': [('', '0')], 'format': 'no_header'} | |
| fast_reader = {'enable': 'force', 'exponent_style': 'A', 'parallel': True} | |
| new_kwargs = {'Reader': <class 'astropy.io.ascii.basic.NoHeader'>, 'fast_reader': {'enable': 'force', 'exponent_style': 'A', 'parallel': True}, 'fill_values': [('', '0')]}, format = 'no_header' | |
| Reader = <class 'astropy.io.ascii.basic.NoHeader'> | |
| def read(table, guess=None, **kwargs): | |
| """ | |
| Read the input ``table`` and return the table. Most of | |
| the default behavior for various parameters is determined by the Reader | |
| class. | |
| Parameters | |
| ---------- | |
| table : str, file-like, list, pathlib.Path object | |
| Input table as a file name, file-like object, list of strings, | |
| single newline-separated string or pathlib.Path object . | |
| guess : bool | |
| Try to guess the table format. Defaults to None. | |
| format : str, `~astropy.io.ascii.BaseReader` | |
| Input table format | |
| Inputter : `~astropy.io.ascii.BaseInputter` | |
| Inputter class | |
| Outputter : `~astropy.io.ascii.BaseOutputter` | |
| Outputter class | |
| delimiter : str | |
| Column delimiter string | |
| comment : str | |
| Regular expression defining a comment line in table | |
| quotechar : str | |
| One-character string to quote fields containing special characters | |
| header_start : int | |
| Line index for the header line not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_start : int | |
| Line index for the start of data not counting comment or blank lines. | |
| A line with only whitespace is considered blank. | |
| data_end : int | |
| Line index for the end of data not counting comment or blank lines. | |
| This value can be negative to count from the end. | |
| converters : dict | |
| Dictionary of converters | |
| data_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split data columns | |
| header_Splitter : `~astropy.io.ascii.BaseSplitter` | |
| Splitter class to split header columns | |
| names : list | |
| List of names corresponding to each data column | |
| include_names : list | |
| List of names to include in output. | |
| exclude_names : list | |
| List of names to exclude from output (applied after ``include_names``) | |
| fill_values : dict | |
| specification of fill values for bad or missing table values | |
| fill_include_names : list | |
| List of names to include in fill_values. | |
| fill_exclude_names : list | |
| List of names to exclude from fill_values (applied after ``fill_include_names``) | |
| fast_reader : bool or dict | |
| Whether to use the C engine, can also be a dict with options which | |
| defaults to `False`; parameters for options dict: | |
| use_fast_converter: bool | |
| enable faster but slightly imprecise floating point conversion method | |
| parallel: bool or int | |
| multiprocessing conversion using ``cpu_count()`` or ``'number'`` processes | |
| exponent_style: str | |
| One-character string defining the exponent or ``'Fortran'`` to auto-detect | |
| Fortran-style scientific notation like ``'3.14159D+00'`` (``'E'``, ``'D'``, ``'Q'``), | |
| all case-insensitive; default ``'E'``, all other imply ``use_fast_converter`` | |
| chunk_size : int | |
| If supplied with a value > 0 then read the table in chunks of | |
| approximately ``chunk_size`` bytes. Default is reading table in one pass. | |
| chunk_generator : bool | |
| If True and ``chunk_size > 0`` then return an iterator that returns a | |
| table for each chunk. The default is to return a single stacked table | |
| for all the chunks. | |
| Reader : `~astropy.io.ascii.BaseReader` | |
| Reader class (DEPRECATED) | |
| encoding: str | |
| Allow to specify encoding to read the file (default= ``None``). | |
| Returns | |
| ------- | |
| dat : `~astropy.table.Table` OR <generator> | |
| Output table | |
| """ | |
| del _read_trace[:] | |
| # Downstream readers might munge kwargs | |
| kwargs = copy.deepcopy(kwargs) | |
| # Convert fast_reader into a dict if not already and make sure 'enable' | |
| # key is available. | |
| fast_reader = kwargs.get('fast_reader', True) | |
| if isinstance(fast_reader, dict): | |
| fast_reader.setdefault('enable', 'force') | |
| else: | |
| fast_reader = {'enable': fast_reader} | |
| kwargs['fast_reader'] = fast_reader | |
| if fast_reader['enable'] and fast_reader.get('chunk_size'): | |
| return _read_in_chunks(table, **kwargs) | |
| if 'fill_values' not in kwargs: | |
| kwargs['fill_values'] = [('', '0')] | |
| # If an Outputter is supplied in kwargs that will take precedence. | |
| new_kwargs = {} | |
| if 'Outputter' in kwargs: # user specified Outputter, not supported for fast reading | |
| fast_reader['enable'] = False | |
| format = kwargs.get('format') | |
| new_kwargs.update(kwargs) | |
| # Get the Reader class based on possible format and Reader kwarg inputs. | |
| Reader = _get_format_class(format, kwargs.get('Reader'), 'Reader') | |
| if Reader is not None: | |
| new_kwargs['Reader'] = Reader | |
| format = Reader._format_name | |
| # Remove format keyword if there, this is only allowed in read() not get_reader() | |
| if 'format' in new_kwargs: | |
| del new_kwargs['format'] | |
| if guess is None: | |
| guess = _GUESS | |
| if guess: | |
| # If ``table`` is probably an HTML file then tell guess function to add | |
| # the HTML reader at the top of the guess list. This is in response to | |
| # issue #3691 (and others) where libxml can segfault on a long non-HTML | |
| # file, thus prompting removal of the HTML reader from the default | |
| # guess list. | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # If `table` is a filename or readable file object then read in the | |
| # file now. This prevents problems in Python 3 with the file object | |
| # getting closed or left at the file end. See #3132, #3013, #3109, | |
| # #2001. If a `readme` arg was passed that implies CDS format, in | |
| # which case the original `table` as the data filename must be left | |
| # intact. | |
| if 'readme' not in new_kwargs: | |
| encoding = kwargs.get('encoding') | |
| try: | |
| with get_readable_fileobj(table, encoding=encoding) as fileobj: | |
| table = fileobj.read() | |
| except ValueError: # unreadable or invalid binary file | |
| raise | |
| except Exception: | |
| pass | |
| else: | |
| # Ensure that `table` has at least one \r or \n in it | |
| # so that the core.BaseInputter test of | |
| # ('\n' not in table and '\r' not in table) | |
| # will fail and so `table` cannot be interpreted there | |
| # as a filename. See #4160. | |
| if not re.search(r'[\r\n]', table): | |
| table = table + os.linesep | |
| # If the table got successfully read then look at the content | |
| # to see if is probably HTML, but only if it wasn't already | |
| # identified as HTML based on the filename. | |
| if not new_kwargs['guess_html']: | |
| new_kwargs['guess_html'] = _probably_html(table) | |
| # Get the table from guess in ``dat``. If ``dat`` comes back as None | |
| # then there was just one set of kwargs in the guess list so fall | |
| # through below to the non-guess way so that any problems result in a | |
| # more useful traceback. | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| if dat is None: | |
| guess = False | |
| if not guess: | |
| reader = get_reader(**new_kwargs) | |
| if format is None: | |
| format = reader._format_name | |
| # Try the fast reader version of `format` first if applicable. Note that | |
| # if user specified a fast format (e.g. format='fast_basic') this test | |
| # will fail and the else-clause below will be used. | |
| if fast_reader['enable'] and 'fast_{0}'.format(format) in core.FAST_CLASSES: | |
| fast_kwargs = copy.deepcopy(new_kwargs) | |
| fast_kwargs['Reader'] = core.FAST_CLASSES['fast_{0}'.format(format)] | |
| fast_reader_rdr = get_reader(**fast_kwargs) | |
| try: | |
| dat = fast_reader_rdr.read(table) | |
| _read_trace.append({'kwargs': fast_kwargs, | |
| 'Reader': fast_reader_rdr.__class__, | |
| 'status': 'Success with fast reader (no guessing)'}) | |
| except (core.ParameterError, cparser.CParserError, UnicodeEncodeError) as err: | |
| # special testing value to avoid falling back on the slow reader | |
| if fast_reader['enable'] == 'force': | |
| raise core.InconsistentTableError( | |
| 'fast reader {} exception: {}' | |
| > .format(fast_reader_rdr.__class__, err)) | |
| E astropy.io.ascii.core.InconsistentTableError: fast reader <class 'astropy.io.ascii.fastbasic.FastNoHeader'> exception: shared semaphore implementation required but not available: no error | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:377: InconsistentTableError | |
| ____________________________________________________________________________________________ test_description _____________________________________________________________________________________________ | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_cds_header_from_readme.py:27: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_cds_header_from_readme.py:10: in read_table1 | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/cds.py:319: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = 't/cds/description/table.dat', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: 't/cds/description/table.dat' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| ____________________________________________________________________________________________ test_multi_header ____________________________________________________________________________________________ | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_cds_header_from_readme.py:42: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_cds_header_from_readme.py:10: in read_table1 | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/cds.py:319: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = 't/cds/multi/lhs2065.dat', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: 't/cds/multi/lhs2065.dat' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| ____________________________________________________________________________________________ test_glob_header _____________________________________________________________________________________________ | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_cds_header_from_readme.py:58: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_cds_header_from_readme.py:10: in read_table1 | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/cds.py:319: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = 't/cds/glob/lmxbrefs.dat', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: 't/cds/glob/lmxbrefs.dat' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _________________________________________________________________________________________ test_header_from_readme _________________________________________________________________________________________ | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_cds_header_from_readme.py:66: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/cds.py:319: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = 't/vizier/table1.dat', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: 't/vizier/table1.dat' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _______________________________________________________________________________________ test_gzip[t/daophot.dat.gz] _______________________________________________________________________________________ | |
| filename = 't/daophot.dat.gz' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_compressed.py:31: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/daophot.dat.gz', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/daophot.dat.gz' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _______________________________________________________________________________________ test_gzip[t/latex1.tex.gz] ________________________________________________________________________________________ | |
| filename = 't/latex1.tex.gz' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_compressed.py:31: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/latex1.tex.gz', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/latex1.tex.gz' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| ________________________________________________________________________________________ test_gzip[t/short.rdb.gz] ________________________________________________________________________________________ | |
| filename = 't/short.rdb.gz' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_compressed.py:31: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/short.rdb.gz', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/short.rdb.gz' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _______________________________________________________________________________________ test_bzip2[t/short.rdb.bz2] _______________________________________________________________________________________ | |
| filename = 't/short.rdb.bz2' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_compressed.py:40: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/short.rdb.bz2', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/short.rdb.bz2' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _______________________________________________________________________________________ test_bzip2[t/ipac.dat.bz2] ________________________________________________________________________________________ | |
| filename = 't/ipac.dat.bz2' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_compressed.py:40: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/ipac.dat.bz2', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/ipac.dat.bz2' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _________________________________________________________________________________________ test_xz[t/short.rdb.xz] _________________________________________________________________________________________ | |
| filename = 't/short.rdb.xz' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_compressed.py:49: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/short.rdb.xz', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/short.rdb.xz' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _________________________________________________________________________________________ test_xz[t/ipac.dat.xz] __________________________________________________________________________________________ | |
| filename = 't/ipac.dat.xz' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_compressed.py:49: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/ipac.dat.xz', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/ipac.dat.xz' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| ______________________________________________________________________________________ test_read_generic[t/cds.dat] _______________________________________________________________________________________ | |
| filename = 't/cds.dat' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_connect.py:37: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/connect.py:20: in read_asciitable | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/cds.dat', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/cds.dat' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| ______________________________________________________________________________________ test_read_generic[t/ipac.dat] ______________________________________________________________________________________ | |
| filename = 't/ipac.dat' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_connect.py:37: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/connect.py:20: in read_asciitable | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/ipac.dat', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/ipac.dat' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| ____________________________________________________________________________________ test_read_generic[t/daophot.dat] _____________________________________________________________________________________ | |
| filename = 't/daophot.dat' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_connect.py:37: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/connect.py:20: in read_asciitable | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/daophot.dat', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/daophot.dat' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _____________________________________________________________________________________ test_read_generic[t/latex1.tex] _____________________________________________________________________________________ | |
| filename = 't/latex1.tex' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_connect.py:37: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/connect.py:20: in read_asciitable | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/latex1.tex', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/latex1.tex' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| ___________________________________________________________________________________ test_read_generic[t/simple_csv.csv] ___________________________________________________________________________________ | |
| filename = 't/simple_csv.csv' | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_connect.py:37: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/connect.py:20: in read_asciitable | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:351: in read | |
| dat = _guess(table, new_kwargs, format, fast_reader) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:497: in _guess | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/simple_csv.csv', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/simple_csv.csv' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _____________________________________________________________________________________________ test_read_ipac ______________________________________________________________________________________________ | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_connect.py:48: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib_pypy/_functools.py:80: in __call__ | |
| return self._func(*(self._args + fargs), **fkeywords) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/connect.py:37: in io_read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:385: in read | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/ipac.dat', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/ipac.dat' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| ______________________________________________________________________________________________ test_read_cds ______________________________________________________________________________________________ | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_connect.py:52: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib_pypy/_functools.py:80: in __call__ | |
| return self._func(*(self._args + fargs), **fkeywords) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/connect.py:37: in io_read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:385: in read | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/cds.py:319: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/cds.dat', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/cds.dat' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| ____________________________________________________________________________________________ test_read_dapphot ____________________________________________________________________________________________ | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_connect.py:56: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib_pypy/_functools.py:80: in __call__ | |
| return self._func(*(self._args + fargs), **fkeywords) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/connect.py:37: in io_read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:385: in read | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/daophot.dat', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| > ??? | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/daophot.dat' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _____________________________________________________________________________________________ test_read_latex _____________________________________________________________________________________________ | |
| > ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/test_connect.py:60: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib_pypy/_functools.py:80: in __call__ | |
| return self._func(*(self._args + fargs), **fkeywords) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/connect.py:37: in io_read | |
| ??? | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/ui.py:385: in read | |
| dat = reader.read(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:1146: in read | |
| self.lines = self.inputter.get_lines(table) | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/core.py:293: in get_lines | |
| encoding=self.encoding) as fileobj: | |
| /Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/contextlib.py:59: in __enter__ | |
| return next(self.gen) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| name_or_obj = '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/latex1.tex', encoding = None, cache = False, show_progress = True, remote_timeout = 10.0 | |
| @contextlib.contextmanager | |
| def get_readable_fileobj(name_or_obj, encoding=None, cache=False, | |
| show_progress=True, remote_timeout=None): | |
| """ | |
| Given a filename, pathlib.Path object or a readable file-like object, return a context | |
| manager that yields a readable file-like object. | |
| This supports passing filenames, URLs, and readable file-like objects, | |
| any of which can be compressed in gzip, bzip2 or lzma (xz) if the | |
| appropriate compression libraries are provided by the Python installation. | |
| Notes | |
| ----- | |
| This function is a context manager, and should be used for example | |
| as:: | |
| with get_readable_fileobj('file.dat') as f: | |
| contents = f.read() | |
| Parameters | |
| ---------- | |
| name_or_obj : str or file-like object | |
| The filename of the file to access (if given as a string), or | |
| the file-like object to access. | |
| If a file-like object, it must be opened in binary mode. | |
| encoding : str, optional | |
| When `None` (default), returns a file-like object with a | |
| ``read`` method that returns `str` (``unicode``) objects, using | |
| `locale.getpreferredencoding` as an encoding. This matches | |
| the default behavior of the built-in `open` when no ``mode`` | |
| argument is provided. | |
| When ``'binary'``, returns a file-like object where its ``read`` | |
| method returns `bytes` objects. | |
| When another string, it is the name of an encoding, and the | |
| file-like object's ``read`` method will return `str` (``unicode``) | |
| objects, decoded from binary using the given encoding. | |
| cache : bool, optional | |
| Whether to cache the contents of remote URLs. | |
| show_progress : bool, optional | |
| Whether to display a progress bar if the file is downloaded | |
| from a remote server. Default is `True`. | |
| remote_timeout : float | |
| Timeout for remote requests in seconds (default is the configurable | |
| `astropy.utils.data.Conf.remote_timeout`, which is 3s by default) | |
| Returns | |
| ------- | |
| file : readable file-like object | |
| """ | |
| # close_fds is a list of file handles created by this function | |
| # that need to be closed. We don't want to always just close the | |
| # returned file handle, because it may simply be the file handle | |
| # passed in. In that case it is not the responsibility of this | |
| # function to close it: doing so could result in a "double close" | |
| # and an "invalid file descriptor" exception. | |
| PATH_TYPES = (str, pathlib.Path) | |
| close_fds = [] | |
| delete_fds = [] | |
| if remote_timeout is None: | |
| # use configfile default | |
| remote_timeout = conf.remote_timeout | |
| # Get a file object to the content | |
| if isinstance(name_or_obj, PATH_TYPES): | |
| # name_or_obj could be a Path object if pathlib is available | |
| name_or_obj = str(name_or_obj) | |
| is_url = _is_url(name_or_obj) | |
| if is_url: | |
| name_or_obj = download_file( | |
| name_or_obj, cache=cache, show_progress=show_progress, | |
| timeout=remote_timeout) | |
| > fileobj = io.FileIO(name_or_obj, 'r') | |
| E OSError: [Errno 24] Too many open files: '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/ascii/tests/t/latex1.tex' | |
| /Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/data.py:193: OSError | |
| _________________________________________________________________________________ TestChecksumFunctions.test_sample_file __________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x0000000114974790> | |
| def test_sample_file(self): | |
| hdul = fits.open(self.data('checksum.fits'), checksum=True) | |
| > hdul.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:41: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________________ TestChecksumFunctions.test_image_create _________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x0000000138726c28> | |
| def test_image_create(self): | |
| n = np.arange(100, dtype=np.int64) | |
| hdu = fits.PrimaryHDU(n) | |
| hdu.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul: | |
| assert (hdu.data == hdul[0].data).all() | |
| assert 'CHECKSUM' in hdul[0].header | |
| assert 'DATASUM' in hdul[0].header | |
| if not sys.platform.startswith('win32'): | |
| # The checksum ends up being different on Windows, possibly due | |
| # to slight floating point differences | |
| assert hdul[0].header['CHECKSUM'] == 'ZHMkeGKjZGKjbGKj' | |
| > assert hdul[0].header['DATASUM'] == '4950' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:56: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________________ TestChecksumFunctions.test_scaled_data __________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x0000000116114ad8> | |
| def test_scaled_data(self): | |
| with fits.open(self.data('scale.fits')) as hdul: | |
| orig_data = hdul[0].data.copy() | |
| hdul[0].scale('int16', 'old') | |
| hdul.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul1: | |
| assert (hdul1[0].data == orig_data).all() | |
| assert 'CHECKSUM' in hdul1[0].header | |
| assert hdul1[0].header['CHECKSUM'] == 'cUmaeUjZcUjacUjW' | |
| assert 'DATASUM' in hdul1[0].header | |
| > assert hdul1[0].header['DATASUM'] == '1891563534' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:68: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011619eb80>], type = None, value = None, traceback = None | |
| def __exit__(self, type, value, traceback): | |
| > self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011619eb80>], output_verify = 'exception', verbose = False, closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| self.flush(output_verify=output_verify, verbose=verbose) | |
| finally: | |
| if self._file and closed and hasattr(self._file, 'close'): | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x0000000116114ad8> | |
| def test_scaled_data(self): | |
| with fits.open(self.data('scale.fits')) as hdul: | |
| orig_data = hdul[0].data.copy() | |
| hdul[0].scale('int16', 'old') | |
| hdul.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul1: | |
| assert (hdul1[0].data == orig_data).all() | |
| assert 'CHECKSUM' in hdul1[0].header | |
| assert hdul1[0].header['CHECKSUM'] == 'cUmaeUjZcUjacUjW' | |
| assert 'DATASUM' in hdul1[0].header | |
| > assert hdul1[0].header['DATASUM'] == '1891563534' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:68: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________ TestChecksumFunctions.test_scaled_data_auto_rescale ___________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x0000000120159980> | |
| def test_scaled_data_auto_rescale(self): | |
| """ | |
| Regression test for | |
| https://github.com/astropy/astropy/issues/3883#issuecomment-115122647 | |
| Ensure that when scaled data is automatically rescaled on | |
| opening/writing a file that the checksum and datasum are computed for | |
| the rescaled array. | |
| """ | |
| with fits.open(self.data('scale.fits')) as hdul: | |
| # Write out a copy of the data with the rescaling applied | |
| > hdul.writeto(self.temp('rescaled.fits')) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:82: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________________ TestChecksumFunctions.test_uint16_data __________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x000000011a4f82f8> | |
| def test_uint16_data(self): | |
| checksums = [ | |
| ('aDcXaCcXaCcXaCcX', '0'), ('oYiGqXi9oXiEoXi9', '1746888714'), | |
| ('VhqQWZoQVfoQVZoQ', '0'), ('4cPp5aOn4aOn4aOn', '0'), | |
| ('8aCN8X9N8aAN8W9N', '1756785133'), ('UhqdUZnbUfnbUZnb', '0'), | |
| ('4cQJ5aN94aNG4aN9', '0')] | |
| with fits.open(self.data('o4sp040b0_raw.fits'), uint=True) as hdul: | |
| hdul.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), uint=True, | |
| checksum=True) as hdul1: | |
| for idx, (hdu_a, hdu_b) in enumerate(zip(hdul, hdul1)): | |
| if hdu_a.data is None or hdu_b.data is None: | |
| assert hdu_a.data is hdu_b.data | |
| else: | |
| assert (hdu_a.data == hdu_b.data).all() | |
| assert 'CHECKSUM' in hdul[idx].header | |
| assert hdul[idx].header['CHECKSUM'] == checksums[idx][0] | |
| assert 'DATASUM' in hdul[idx].header | |
| > assert hdul[idx].header['DATASUM'] == checksums[idx][1] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:130: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000139d80020>, <astropy.io.fits.hdu.image.ImageHDU object at 0x...ts.hdu.image.ImageHDU object at 0x0000000114cd9d00>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000114f82218>] | |
| type = None, value = None, traceback = None | |
| def __exit__(self, type, value, traceback): | |
| > self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000139d80020>, <astropy.io.fits.hdu.image.ImageHDU object at 0x...ts.hdu.image.ImageHDU object at 0x0000000114cd9d00>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000114f82218>] | |
| output_verify = 'exception', verbose = False, closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| self.flush(output_verify=output_verify, verbose=verbose) | |
| finally: | |
| if self._file and closed and hasattr(self._file, 'close'): | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x000000011a4f82f8> | |
| def test_uint16_data(self): | |
| checksums = [ | |
| ('aDcXaCcXaCcXaCcX', '0'), ('oYiGqXi9oXiEoXi9', '1746888714'), | |
| ('VhqQWZoQVfoQVZoQ', '0'), ('4cPp5aOn4aOn4aOn', '0'), | |
| ('8aCN8X9N8aAN8W9N', '1756785133'), ('UhqdUZnbUfnbUZnb', '0'), | |
| ('4cQJ5aN94aNG4aN9', '0')] | |
| with fits.open(self.data('o4sp040b0_raw.fits'), uint=True) as hdul: | |
| hdul.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), uint=True, | |
| checksum=True) as hdul1: | |
| for idx, (hdu_a, hdu_b) in enumerate(zip(hdul, hdul1)): | |
| if hdu_a.data is None or hdu_b.data is None: | |
| assert hdu_a.data is hdu_b.data | |
| else: | |
| assert (hdu_a.data == hdu_b.data).all() | |
| assert 'CHECKSUM' in hdul[idx].header | |
| assert hdul[idx].header['CHECKSUM'] == checksums[idx][0] | |
| assert 'DATASUM' in hdul[idx].header | |
| > assert hdul[idx].header['DATASUM'] == checksums[idx][1] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:130: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _______________________________________________________________________________ TestChecksumFunctions.test_groups_hdu_data ________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x00000001371d0560> | |
| def test_groups_hdu_data(self): | |
| imdata = np.arange(100.0) | |
| imdata.shape = (10, 1, 1, 2, 5) | |
| pdata1 = np.arange(10) + 0.1 | |
| pdata2 = 42 | |
| x = fits.hdu.groups.GroupData(imdata, parnames=[str('abc'), str('xyz')], | |
| pardata=[pdata1, pdata2], bitpix=-32) | |
| hdu = fits.GroupsHDU(x) | |
| hdu.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul: | |
| assert comparerecords(hdul[0].data, hdu.data) | |
| assert 'CHECKSUM' in hdul[0].header | |
| assert hdul[0].header['CHECKSUM'] == '3eDQAZDO4dDOAZDO' | |
| assert 'DATASUM' in hdul[0].header | |
| > assert hdul[0].header['DATASUM'] == '2797758084' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:146: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________________ TestChecksumFunctions.test_binary_table_data _______________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x00000001199c6918> | |
| def test_binary_table_data(self): | |
| a1 = np.array(['NGC1001', 'NGC1002', 'NGC1003']) | |
| a2 = np.array([11.1, 12.3, 15.2]) | |
| col1 = fits.Column(name='target', format='20A', array=a1) | |
| col2 = fits.Column(name='V_mag', format='E', array=a2) | |
| cols = fits.ColDefs([col1, col2]) | |
| tbhdu = fits.BinTableHDU.from_columns(cols) | |
| tbhdu.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul: | |
| assert comparerecords(tbhdu.data, hdul[1].data) | |
| assert 'CHECKSUM' in hdul[0].header | |
| assert hdul[0].header['CHECKSUM'] == 'D8iBD6ZAD6fAD6ZA' | |
| assert 'DATASUM' in hdul[0].header | |
| assert hdul[0].header['DATASUM'] == '0' | |
| assert 'CHECKSUM' in hdul[1].header | |
| assert hdul[1].header['CHECKSUM'] == 'aD1Oa90MaC0Ma90M' | |
| assert 'DATASUM' in hdul[1].header | |
| > assert hdul[1].header['DATASUM'] == '1062205743' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:165: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| __________________________________________________________________________ TestChecksumFunctions.test_variable_length_table_data __________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x00000001170b1868> | |
| def test_variable_length_table_data(self): | |
| c1 = fits.Column(name='var', format='PJ()', | |
| array=np.array([[45.0, 56], np.array([11, 12, 13])], | |
| 'O')) | |
| c2 = fits.Column(name='xyz', format='2I', array=[[11, 3], [12, 4]]) | |
| tbhdu = fits.BinTableHDU.from_columns([c1, c2]) | |
| tbhdu.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul: | |
| assert comparerecords(tbhdu.data, hdul[1].data) | |
| assert 'CHECKSUM' in hdul[0].header | |
| assert hdul[0].header['CHECKSUM'] == 'D8iBD6ZAD6fAD6ZA' | |
| assert 'DATASUM' in hdul[0].header | |
| assert hdul[0].header['DATASUM'] == '0' | |
| assert 'CHECKSUM' in hdul[1].header | |
| assert hdul[1].header['CHECKSUM'] == 'YIGoaIEmZIEmaIEm' | |
| assert 'DATASUM' in hdul[1].header | |
| > assert hdul[1].header['DATASUM'] == '1507485' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:183: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _______________________________________________________________________________ TestChecksumFunctions.test_ascii_table_data _______________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x000000011c336410> | |
| def test_ascii_table_data(self): | |
| a1 = np.array(['abc', 'def']) | |
| r1 = np.array([11.0, 12.0]) | |
| c1 = fits.Column(name='abc', format='A3', array=a1) | |
| # This column used to be E format, but the single-precision float lost | |
| # too much precision when scaling so it was changed to a D | |
| c2 = fits.Column(name='def', format='D', array=r1, bscale=2.3, | |
| bzero=0.6) | |
| c3 = fits.Column(name='t1', format='I', array=[91, 92, 93]) | |
| x = fits.ColDefs([c1, c2, c3]) | |
| hdu = fits.TableHDU.from_columns(x) | |
| hdu.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul: | |
| assert comparerecords(hdu.data, hdul[1].data) | |
| assert 'CHECKSUM' in hdul[0].header | |
| assert hdul[0].header['CHECKSUM'] == 'D8iBD6ZAD6fAD6ZA' | |
| assert 'DATASUM' in hdul[0].header | |
| assert hdul[0].header['DATASUM'] == '0' | |
| if not sys.platform.startswith('win32'): | |
| # The checksum ends up being different on Windows, possibly due | |
| # to slight floating point differences | |
| assert 'CHECKSUM' in hdul[1].header | |
| assert hdul[1].header['CHECKSUM'] == '3rKFAoI94oICAoI9' | |
| assert 'DATASUM' in hdul[1].header | |
| > assert hdul[1].header['DATASUM'] == '1914653725' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:210: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ____________________________________________________________________________ TestChecksumFunctions.test_compressed_image_data _____________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x00000001168942f8> | |
| def test_compressed_image_data(self): | |
| with fits.open(self.data('comp.fits')) as h1: | |
| h1.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as h2: | |
| assert np.all(h1[1].data == h2[1].data) | |
| assert 'CHECKSUM' in h2[0].header | |
| assert h2[0].header['CHECKSUM'] == 'D8iBD6ZAD6fAD6ZA' | |
| assert 'DATASUM' in h2[0].header | |
| assert h2[0].header['DATASUM'] == '0' | |
| assert 'CHECKSUM' in h2[1].header | |
| assert h2[1].header['CHECKSUM'] == 'ZeAbdb8aZbAabb7a' | |
| assert 'DATASUM' in h2[1].header | |
| > assert h2[1].header['DATASUM'] == '113055149' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:224: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000116e87948>, <astropy.io.fits.hdu.compressed.CompImageHDU object at 0x0000000121f3b750>], type = None, value = None, traceback = None | |
| def __exit__(self, type, value, traceback): | |
| > self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000116e87948>, <astropy.io.fits.hdu.compressed.CompImageHDU object at 0x0000000121f3b750>], output_verify = 'exception', verbose = False | |
| closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| self.flush(output_verify=output_verify, verbose=verbose) | |
| finally: | |
| if self._file and closed and hasattr(self._file, 'close'): | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x00000001168942f8> | |
| def test_compressed_image_data(self): | |
| with fits.open(self.data('comp.fits')) as h1: | |
| h1.writeto(self.temp('tmp.fits'), overwrite=True, checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as h2: | |
| assert np.all(h1[1].data == h2[1].data) | |
| assert 'CHECKSUM' in h2[0].header | |
| assert h2[0].header['CHECKSUM'] == 'D8iBD6ZAD6fAD6ZA' | |
| assert 'DATASUM' in h2[0].header | |
| assert h2[0].header['DATASUM'] == '0' | |
| assert 'CHECKSUM' in h2[1].header | |
| assert h2[1].header['CHECKSUM'] == 'ZeAbdb8aZbAabb7a' | |
| assert 'DATASUM' in h2[1].header | |
| > assert h2[1].header['DATASUM'] == '113055149' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:224: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________ TestChecksumFunctions.test_compressed_image_data_int16 __________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x000000011a934f00> | |
| def test_compressed_image_data_int16(self): | |
| n = np.arange(100, dtype='int16') | |
| hdu = fits.ImageHDU(n) | |
| comp_hdu = fits.CompImageHDU(hdu.data, hdu.header) | |
| comp_hdu.writeto(self.temp('tmp.fits'), checksum=True) | |
| hdu.writeto(self.temp('uncomp.fits'), checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul: | |
| assert np.all(hdul[1].data == comp_hdu.data) | |
| assert np.all(hdul[1].data == hdu.data) | |
| assert 'CHECKSUM' in hdul[0].header | |
| assert hdul[0].header['CHECKSUM'] == 'D8iBD6ZAD6fAD6ZA' | |
| assert 'DATASUM' in hdul[0].header | |
| assert hdul[0].header['DATASUM'] == '0' | |
| assert 'CHECKSUM' in hdul[1].header | |
| assert hdul[1]._header['CHECKSUM'] == 'J5cCJ5c9J5cAJ5c9' | |
| assert 'DATASUM' in hdul[1].header | |
| assert hdul[1]._header['DATASUM'] == '2453673070' | |
| assert 'CHECKSUM' in hdul[1].header | |
| with fits.open(self.temp('uncomp.fits'), checksum=True) as hdul2: | |
| header_comp = hdul[1]._header | |
| header_uncomp = hdul2[1].header | |
| assert 'ZHECKSUM' in header_comp | |
| assert 'CHECKSUM' in header_uncomp | |
| assert header_uncomp['CHECKSUM'] == 'ZE94eE91ZE91bE91' | |
| assert header_comp['ZHECKSUM'] == header_uncomp['CHECKSUM'] | |
| assert 'ZDATASUM' in header_comp | |
| assert 'DATASUM' in header_uncomp | |
| assert header_uncomp['DATASUM'] == '160565700' | |
| > assert header_comp['ZDATASUM'] == header_uncomp['DATASUM'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:256: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011c173b08>, <astropy.io.fits.hdu.image.ImageHDU object at 0x000000011c1524b8>], type = None, value = None, traceback = None | |
| def __exit__(self, type, value, traceback): | |
| > self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011c173b08>, <astropy.io.fits.hdu.image.ImageHDU object at 0x000000011c1524b8>], output_verify = 'exception', verbose = False | |
| closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| self.flush(output_verify=output_verify, verbose=verbose) | |
| finally: | |
| if self._file and closed and hasattr(self._file, 'close'): | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x000000011a934f00> | |
| def test_compressed_image_data_int16(self): | |
| n = np.arange(100, dtype='int16') | |
| hdu = fits.ImageHDU(n) | |
| comp_hdu = fits.CompImageHDU(hdu.data, hdu.header) | |
| comp_hdu.writeto(self.temp('tmp.fits'), checksum=True) | |
| hdu.writeto(self.temp('uncomp.fits'), checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul: | |
| assert np.all(hdul[1].data == comp_hdu.data) | |
| assert np.all(hdul[1].data == hdu.data) | |
| assert 'CHECKSUM' in hdul[0].header | |
| assert hdul[0].header['CHECKSUM'] == 'D8iBD6ZAD6fAD6ZA' | |
| assert 'DATASUM' in hdul[0].header | |
| assert hdul[0].header['DATASUM'] == '0' | |
| assert 'CHECKSUM' in hdul[1].header | |
| assert hdul[1]._header['CHECKSUM'] == 'J5cCJ5c9J5cAJ5c9' | |
| assert 'DATASUM' in hdul[1].header | |
| assert hdul[1]._header['DATASUM'] == '2453673070' | |
| assert 'CHECKSUM' in hdul[1].header | |
| with fits.open(self.temp('uncomp.fits'), checksum=True) as hdul2: | |
| header_comp = hdul[1]._header | |
| header_uncomp = hdul2[1].header | |
| assert 'ZHECKSUM' in header_comp | |
| assert 'CHECKSUM' in header_uncomp | |
| assert header_uncomp['CHECKSUM'] == 'ZE94eE91ZE91bE91' | |
| assert header_comp['ZHECKSUM'] == header_uncomp['CHECKSUM'] | |
| assert 'ZDATASUM' in header_comp | |
| assert 'DATASUM' in header_uncomp | |
| assert header_uncomp['DATASUM'] == '160565700' | |
| > assert header_comp['ZDATASUM'] == header_uncomp['DATASUM'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:256: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________ TestChecksumFunctions.test_compressed_image_data_float32 _________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x0000000122381638> | |
| def test_compressed_image_data_float32(self): | |
| n = np.arange(100, dtype='float32') | |
| hdu = fits.ImageHDU(n) | |
| comp_hdu = fits.CompImageHDU(hdu.data, hdu.header) | |
| comp_hdu.writeto(self.temp('tmp.fits'), checksum=True) | |
| hdu.writeto(self.temp('uncomp.fits'), checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul: | |
| assert np.all(hdul[1].data == comp_hdu.data) | |
| assert np.all(hdul[1].data == hdu.data) | |
| assert 'CHECKSUM' in hdul[0].header | |
| assert hdul[0].header['CHECKSUM'] == 'D8iBD6ZAD6fAD6ZA' | |
| assert 'DATASUM' in hdul[0].header | |
| assert hdul[0].header['DATASUM'] == '0' | |
| assert 'CHECKSUM' in hdul[1].header | |
| assert 'DATASUM' in hdul[1].header | |
| if not sys.platform.startswith('win32'): | |
| # The checksum ends up being different on Windows, possibly due | |
| # to slight floating point differences | |
| assert hdul[1]._header['CHECKSUM'] == 'eATIf3SHe9SHe9SH' | |
| assert hdul[1]._header['DATASUM'] == '1277667818' | |
| with fits.open(self.temp('uncomp.fits'), checksum=True) as hdul2: | |
| header_comp = hdul[1]._header | |
| header_uncomp = hdul2[1].header | |
| assert 'ZHECKSUM' in header_comp | |
| assert 'CHECKSUM' in header_uncomp | |
| assert header_uncomp['CHECKSUM'] == 'Cgr5FZo2Cdo2CZo2' | |
| assert header_comp['ZHECKSUM'] == header_uncomp['CHECKSUM'] | |
| assert 'ZDATASUM' in header_comp | |
| assert 'DATASUM' in header_uncomp | |
| assert header_uncomp['DATASUM'] == '2393636889' | |
| > assert header_comp['ZDATASUM'] == header_uncomp['DATASUM'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:291: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000118cf5ad0>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000118ca62f8>], type = None, value = None, traceback = None | |
| def __exit__(self, type, value, traceback): | |
| > self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000118cf5ad0>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000118ca62f8>], output_verify = 'exception', verbose = False | |
| closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| self.flush(output_verify=output_verify, verbose=verbose) | |
| finally: | |
| if self._file and closed and hasattr(self._file, 'close'): | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x0000000122381638> | |
| def test_compressed_image_data_float32(self): | |
| n = np.arange(100, dtype='float32') | |
| hdu = fits.ImageHDU(n) | |
| comp_hdu = fits.CompImageHDU(hdu.data, hdu.header) | |
| comp_hdu.writeto(self.temp('tmp.fits'), checksum=True) | |
| hdu.writeto(self.temp('uncomp.fits'), checksum=True) | |
| with fits.open(self.temp('tmp.fits'), checksum=True) as hdul: | |
| assert np.all(hdul[1].data == comp_hdu.data) | |
| assert np.all(hdul[1].data == hdu.data) | |
| assert 'CHECKSUM' in hdul[0].header | |
| assert hdul[0].header['CHECKSUM'] == 'D8iBD6ZAD6fAD6ZA' | |
| assert 'DATASUM' in hdul[0].header | |
| assert hdul[0].header['DATASUM'] == '0' | |
| assert 'CHECKSUM' in hdul[1].header | |
| assert 'DATASUM' in hdul[1].header | |
| if not sys.platform.startswith('win32'): | |
| # The checksum ends up being different on Windows, possibly due | |
| # to slight floating point differences | |
| assert hdul[1]._header['CHECKSUM'] == 'eATIf3SHe9SHe9SH' | |
| assert hdul[1]._header['DATASUM'] == '1277667818' | |
| with fits.open(self.temp('uncomp.fits'), checksum=True) as hdul2: | |
| header_comp = hdul[1]._header | |
| header_uncomp = hdul2[1].header | |
| assert 'ZHECKSUM' in header_comp | |
| assert 'CHECKSUM' in header_uncomp | |
| assert header_uncomp['CHECKSUM'] == 'Cgr5FZo2Cdo2CZo2' | |
| assert header_comp['ZHECKSUM'] == header_uncomp['CHECKSUM'] | |
| assert 'ZDATASUM' in header_comp | |
| assert 'DATASUM' in header_uncomp | |
| assert header_uncomp['DATASUM'] == '2393636889' | |
| > assert header_comp['ZDATASUM'] == header_uncomp['DATASUM'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:291: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ____________________________________________________________________________________ TestChecksumFunctions.test_append ____________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x000000011f3b0020> | |
| def test_append(self): | |
| hdul = fits.open(self.data('tb.fits')) | |
| hdul.writeto(self.temp('tmp.fits'), overwrite=True) | |
| n = np.arange(100) | |
| fits.append(self.temp('tmp.fits'), n, checksum=True) | |
| > hdul.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:302: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________ TestChecksumFunctions.test_writeto_convenience ______________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x000000012aa32e90> | |
| def test_writeto_convenience(self): | |
| n = np.arange(100) | |
| fits.writeto(self.temp('tmp.fits'), n, overwrite=True, checksum=True) | |
| hdul = fits.open(self.temp('tmp.fits'), checksum=True) | |
| self._check_checksums(hdul[0]) | |
| > hdul.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:312: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________ TestChecksumFunctions.test_hdu_writeto_existing _____________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x0000000139d328e0> | |
| def test_hdu_writeto_existing(self): | |
| """ | |
| Tests that when using writeto with checksum=True, a checksum and | |
| datasum are added to HDUs that did not previously have one. | |
| Regression test for https://github.com/spacetelescope/PyFITS/issues/8 | |
| """ | |
| with fits.open(self.data('tb.fits')) as hdul: | |
| > hdul.writeto(self.temp('test.fits'), checksum=True) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:331: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________ TestChecksumFunctions.test_open_update_mode_preserve_checksum ______________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x000000013a0134b0> | |
| def test_open_update_mode_preserve_checksum(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/148 where | |
| checksums are being removed from headers when a file is opened in | |
| update mode, even though no changes were made to the file. | |
| """ | |
| self.copy_file('checksum.fits') | |
| with fits.open(self.temp('checksum.fits')) as hdul: | |
| > data = hdul[1].data.copy() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:365: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _______________________________________________________________________ TestChecksumFunctions.test_open_update_mode_update_checksum _______________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x000000012a6164f0> | |
| def test_open_update_mode_update_checksum(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/148, part | |
| 2. This ensures that if a file contains a checksum, the checksum is | |
| updated when changes are saved to the file, even if the file was opened | |
| with the default of checksum=False. | |
| An existing checksum and/or datasum are only stripped if the file is | |
| opened with checksum='remove'. | |
| """ | |
| self.copy_file('checksum.fits') | |
| with fits.open(self.temp('checksum.fits')) as hdul: | |
| header = hdul[1].header.copy() | |
| > data = hdul[1].data.copy() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:389: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________________ TestChecksumFunctions.test_overwrite_invalid _______________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_checksum.TestChecksumFunctions object at 0x000000011f4e8e58> | |
| def test_overwrite_invalid(self): | |
| """ | |
| Tests that invalid checksum or datasum are overwriten when the file is | |
| saved. | |
| """ | |
| reffile = self.temp('ref.fits') | |
| with fits.open(self.data('tb.fits')) as hdul: | |
| > hdul.writeto(reffile, checksum=True) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_checksum.py:427: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _______________________________________________________________________________________ TestSingleTable.test_memmap _______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_connect.TestSingleTable object at 0x0000000121938100>, tmpdir = local('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540/test_memmap0') | |
| def test_memmap(self, tmpdir): | |
| filename = str(tmpdir.join('test_simple.fts')) | |
| t1 = Table(self.data) | |
| t1.write(filename, overwrite=True) | |
| t2 = Table.read(filename, memmap=False) | |
| > t3 = Table.read(filename, memmap=True) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_connect.py:167: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| out = io_registry.read(cls, *args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| data = reader(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/connect.py:201: in read_table_fits | |
| hdulist.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________________ TestSingleTable.test_character_as_bytes[True] ______________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_connect.TestSingleTable object at 0x0000000137bbf050> | |
| tmpdir = local('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540/test_character_as_bytes_True_0'), memmap = True | |
| @pytest.mark.parametrize('memmap', (False, True)) | |
| def test_character_as_bytes(self, tmpdir, memmap): | |
| filename = str(tmpdir.join('test_simple.fts')) | |
| t1 = Table(self.data) | |
| t1.write(filename, overwrite=True) | |
| > t2 = Table.read(filename, character_as_bytes=False, memmap=memmap) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_connect.py:179: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/table/table.py:2533: in read | |
| out = io_registry.read(cls, *args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/registry.py:517: in read | |
| data = reader(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/connect.py:201: in read_table_fits | |
| hdulist.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ____________________________________________________________________________________________ test_bool_column _____________________________________________________________________________________________ | |
| tmpdir = local('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540/test_bool_column0') | |
| def test_bool_column(tmpdir): | |
| """ | |
| Regression test for https://github.com/astropy/astropy/issues/1953 | |
| Ensures that Table columns of bools are properly written to a FITS table. | |
| """ | |
| arr = np.ones(5, dtype=bool) | |
| arr[::2] == np.False_ | |
| t = Table([arr]) | |
| t.write(str(tmpdir.join('test.fits')), overwrite=True) | |
| with fits.open(str(tmpdir.join('test.fits'))) as hdul: | |
| assert hdul[1].data['col0'].dtype == np.dtype('bool') | |
| > assert np.all(hdul[1].data['col0'] == arr) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_connect.py:323: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________________________ test_unicode_column ___________________________________________________________________________________________ | |
| tmpdir = local('/private/var/folders/t_/_mywtcj146lbk2c99bnxw7z40000gp/T/pytest-of-deil/pytest-540/test_unicode_column0') | |
| def test_unicode_column(tmpdir): | |
| """ | |
| Test that a column of unicode strings is still written as one | |
| byte-per-character in the FITS table (so long as the column can be ASCII | |
| encoded). | |
| Regression test for one of the issues fixed in | |
| https://github.com/astropy/astropy/pull/4228 | |
| """ | |
| t = Table([np.array([u'a', u'b', u'cd'])]) | |
| t.write(str(tmpdir.join('test.fits')), overwrite=True) | |
| with fits.open(str(tmpdir.join('test.fits'))) as hdul: | |
| assert np.all(hdul[1].data['col0'] == ['a', 'b', 'cd']) | |
| > assert hdul[1].header['TFORM1'] == '2A' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_connect.py:341: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| __________________________________________________________________________________ TestConvenience.test_resource_warning __________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_convenience.TestConvenience object at 0x0000000137724100> | |
| def test_resource_warning(self): | |
| warnings.simplefilter('always', ResourceWarning) | |
| with catch_warnings() as w: | |
| > data = fits.getdata(self.data('test0.fits')) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_convenience.py:23: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/convenience.py:207: in getdata | |
| hdulist.close(closed=closed) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________ TestConvenience.test_image_extension_update_header ____________________________________________________________________________ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011f687e18>, <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001139e8100>], output_verify = 'exception', verbose = False | |
| closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| > self.flush(output_verify=output_verify, verbose=verbose) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:891: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011f687e18>, <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001139e8100>], output_verify = 'exception', verbose = False | |
| > func = make_function_with_signature(func, name=name, **wrapped_args) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:827: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| args = ([<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011f687e18>, <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001139e8100>],) | |
| kwargs = {'output_verify': 'exception', 'verbose': False}, curr_thread = <_MainThread(MainThread, started 140736100262784)>, single_thread = True | |
| SigintHandler = <class 'astropy.io.fits.util.ignore_sigint.<locals>.wrapped.<locals>.SigintHandler'> | |
| sigint_handler = <astropy.io.fits.util.ignore_sigint.<locals>.wrapped.<locals>.SigintHandler object at 0x00000001139e8b48>, old_handler = <built-in function default_int_handler> | |
| @wraps(func) | |
| def wrapped(*args, **kwargs): | |
| # Get the name of the current thread and determine if this is a single | |
| # threaded application | |
| curr_thread = threading.currentThread() | |
| single_thread = (threading.activeCount() == 1 and | |
| curr_thread.getName() == 'MainThread') | |
| class SigintHandler: | |
| def __init__(self): | |
| self.sigint_received = False | |
| def __call__(self, signum, frame): | |
| warnings.warn('KeyboardInterrupt ignored until {} is ' | |
| 'complete!'.format(func.__name__), | |
| AstropyUserWarning) | |
| self.sigint_received = True | |
| sigint_handler = SigintHandler() | |
| # Define new signal interput handler | |
| if single_thread: | |
| # Install new handler | |
| old_handler = signal.signal(signal.SIGINT, sigint_handler) | |
| try: | |
| > func(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/util.py:233: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011f687e18>, <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001139e8100>], output_verify = 'exception', verbose = False | |
| @ignore_sigint | |
| def flush(self, output_verify='fix', verbose=False): | |
| """ | |
| Force a write of the `HDUList` back to the file (for append and | |
| update modes only). | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print verbose messages | |
| """ | |
| if self._file.mode not in ('append', 'update', 'ostream'): | |
| warnings.warn("Flush for '{}' mode is not supported." | |
| .format(self._file.mode), AstropyUserWarning) | |
| return | |
| if self._save_backup and self._file.mode in ('append', 'update'): | |
| filename = self._file.name | |
| if os.path.exists(filename): | |
| # The the file doesn't actually exist anymore for some reason | |
| # then there's no point in trying to make a backup | |
| backup = filename + '.bak' | |
| idx = 1 | |
| while os.path.exists(backup): | |
| backup = filename + '.bak.' + str(idx) | |
| idx += 1 | |
| warnings.warn('Saving a backup of {} to {}.'.format( | |
| filename, backup), AstropyUserWarning) | |
| try: | |
| shutil.copy(filename, backup) | |
| except OSError as exc: | |
| raise OSError('Failed to save backup to destination {}: ' | |
| '{}'.format(filename, exc)) | |
| self.verify(option=output_verify) | |
| if self._file.mode in ('append', 'ostream'): | |
| for hdu in self: | |
| if verbose: | |
| try: | |
| extver = str(hdu._header['extver']) | |
| except KeyError: | |
| extver = '' | |
| # only append HDU's which are "new" | |
| if hdu._new: | |
| hdu._prewriteto(checksum=hdu._output_checksum) | |
| with _free_space_check(self): | |
| hdu._writeto(self._file) | |
| if verbose: | |
| print('append HDU', hdu.name, extver) | |
| hdu._new = False | |
| hdu._postwriteto() | |
| elif self._file.mode == 'update': | |
| > self._flush_update() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:770: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011f687e18>, <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001139e8100>] | |
| def _flush_update(self): | |
| """Implements flushing changes to a file in update mode.""" | |
| for hdu in self: | |
| # Need to all _prewriteto() for each HDU first to determine if | |
| # resizing will be necessary | |
| hdu._prewriteto(checksum=hdu._output_checksum, inplace=True) | |
| try: | |
| self._wasresized() | |
| # if the HDUList is resized, need to write out the entire contents of | |
| # the hdulist to the file. | |
| if self._resize or self._file.compression: | |
| > self._flush_resize() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1186: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011f687e18>, <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001139e8100>] | |
| def _flush_resize(self): | |
| """ | |
| Implements flushing changes in update mode when parts of one or more HDU | |
| need to be resized. | |
| """ | |
| old_name = self._file.name | |
| old_memmap = self._file.memmap | |
| name = _tmp_name(old_name) | |
| if not self._file.file_like: | |
| old_mode = os.stat(old_name).st_mode | |
| # The underlying file is an actual file object. The HDUList is | |
| # resized, so we need to write it to a tmp file, delete the | |
| # original file, and rename the tmp file to the original file. | |
| if self._file.compression == 'gzip': | |
| new_file = gzip.GzipFile(name, mode='ab+') | |
| elif self._file.compression == 'bzip2': | |
| new_file = bz2.BZ2File(name, mode='w') | |
| else: | |
| new_file = name | |
| with self.fromfile(new_file, mode='append') as hdulist: | |
| for hdu in self: | |
| hdu._writeto(hdulist._file, inplace=True, copy=True) | |
| if sys.platform.startswith('win'): | |
| # Collect a list of open mmaps to the data; this well be | |
| # used later. See below. | |
| mmaps = [(idx, _get_array_mmap(hdu.data), hdu.data) | |
| for idx, hdu in enumerate(self) if hdu._has_data] | |
| hdulist._file.close() | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1232: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_convenience.TestConvenience object at 0x000000011f687a60> | |
| def test_image_extension_update_header(self): | |
| """ | |
| Test that _makehdu correctly includes the header. For example in the | |
| fits.update convenience function. | |
| """ | |
| filename = self.temp('twoextension.fits') | |
| hdus = [fits.PrimaryHDU(np.zeros((10, 10))), | |
| fits.ImageHDU(np.zeros((10, 10)))] | |
| fits.HDUList(hdus).writeto(filename) | |
| fits.update(filename, | |
| np.zeros((10, 10)), | |
| header=fits.Header([('WHAT', 100)]), | |
| > ext=1) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_convenience.py:106: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/convenience.py:685: in update | |
| hdulist.close(closed=closed) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________________ TestConvenience.test_printdiff ______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_convenience.TestConvenience object at 0x000000011f4e9d00> | |
| def test_printdiff(self): | |
| """ | |
| Test that FITSDiff can run the different inputs without crashing. | |
| """ | |
| # Testing different string input options | |
| > assert printdiff(self.data('arange.fits'), | |
| self.data('blank.fits')) is None | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_convenience.py:116: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/convenience.py:833: in printdiff | |
| print(FITSDiff(inputa, inputb, **kwargs).report()) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________________ TestConvenience.test_tabledump ______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_convenience.TestConvenience object at 0x000000011b975ec0> | |
| def test_tabledump(self): | |
| """ | |
| Regression test for https://github.com/astropy/astropy/issues/6937 | |
| """ | |
| # copy fits file to the temp directory | |
| self.copy_file('tb.fits') | |
| # test without datafile | |
| > fits.tabledump(self.temp('tb.fits')) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_convenience.py:151: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:488: in wrapper | |
| return function(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/convenience.py:899: in tabledump | |
| f.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________________________ TestCore.test_byteswap __________________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestCore object at 0x00000001365381a8> | |
| def test_byteswap(self): | |
| p = fits.PrimaryHDU() | |
| l = fits.HDUList() | |
| n = np.zeros(3, dtype='i2') | |
| n[0] = 1 | |
| n[1] = 60000 | |
| n[2] = 2 | |
| c = fits.Column(name='foo', format='i2', bscale=1, bzero=32768, | |
| array=n) | |
| t = fits.BinTableHDU.from_columns([c]) | |
| l.append(p) | |
| l.append(t) | |
| l.writeto(self.temp('test.fits'), overwrite=True) | |
| with fits.open(self.temp('test.fits')) as p: | |
| > assert p[1].data[1]['foo'] == 60000.0 | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:68: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________________ TestCore.test_add_del_columns2 ______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestCore object at 0x00000001371ebe18> | |
| def test_add_del_columns2(self): | |
| hdulist = fits.open(self.data('tb.fits')) | |
| table = hdulist[1] | |
| assert table.data.dtype.names == ('c1', 'c2', 'c3', 'c4') | |
| assert table.columns.names == ['c1', 'c2', 'c3', 'c4'] | |
| > table.columns.del_col(str('c1')) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:97: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/column.py:1691: in del_col | |
| self._notify('column_removed', self, indx) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/util.py:129: in _notify | |
| method(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/table.py:587: in _update_column_removed | |
| super()._update_column_removed(columns, idx) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/table.py:234: in _update_column_removed | |
| del self.data | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:732: in __delete__ | |
| self.fdel(obj) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.hdu.table.BinTableHDU object at 0x00000001371eba60> | |
| def data(self): | |
| # The deleter | |
| if self._file is not None and self._data_loaded: | |
| > data_refcount = sys.getrefcount(self.data) | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/base.py:106: AttributeError | |
| ______________________________________________________________________________________ TestCore.test_hdu_fromstring _______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestCore object at 0x0000000122381050> | |
| def test_hdu_fromstring(self): | |
| """ | |
| Tests creating a fully-formed HDU object from a string containing the | |
| bytes of the HDU. | |
| """ | |
| dat = open(self.data('test0.fits'), 'rb').read() | |
| offset = 0 | |
| with fits.open(self.data('test0.fits')) as hdul: | |
| hdulen = hdul[0]._data_offset + hdul[0]._data_size | |
| hdu = fits.PrimaryHDU.fromstring(dat[:hdulen]) | |
| assert isinstance(hdu, fits.PrimaryHDU) | |
| assert hdul[0].header == hdu.header | |
| assert hdu.data is None | |
| hdu.header['TEST'] = 'TEST' | |
| hdu.writeto(self.temp('test.fits')) | |
| with fits.open(self.temp('test.fits')) as hdul: | |
| assert isinstance(hdu, fits.PrimaryHDU) | |
| assert hdul[0].header[:-1] == hdu.header[:-1] | |
| assert hdul[0].header['TEST'] == 'TEST' | |
| assert hdu.data is None | |
| with fits.open(self.data('test0.fits'))as hdul: | |
| for ext_hdu in hdul[1:]: | |
| offset += hdulen | |
| hdulen = len(str(ext_hdu.header)) + ext_hdu._data_size | |
| hdu = fits.ImageHDU.fromstring(dat[offset:offset + hdulen]) | |
| assert isinstance(hdu, fits.ImageHDU) | |
| assert ext_hdu.header == hdu.header | |
| > assert (ext_hdu.data == hdu.data).all() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:412: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________________________ TestCore.test_nonstandard_hdu ______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestCore object at 0x0000000114c53b40> | |
| def test_nonstandard_hdu(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/157 | |
| Tests that "Nonstandard" HDUs with SIMPLE = F are read and written | |
| without prepending a superfluous and unwanted standard primary HDU. | |
| """ | |
| data = np.arange(100, dtype=np.uint8) | |
| hdu = fits.PrimaryHDU(data=data) | |
| hdu.header['SIMPLE'] = False | |
| hdu.writeto(self.temp('test.fits')) | |
| info = [(0, '', 1, 'NonstandardHDU', 5, (), '', '')] | |
| with fits.open(self.temp('test.fits')) as hdul: | |
| assert hdul.info(output=False) == info | |
| # NonstandardHDUs just treat the data as an unspecified array of | |
| # bytes. The first 100 bytes should match the original data we | |
| # passed in...the rest should be zeros padding out the rest of the | |
| # FITS block | |
| assert (hdul[0].data[:100] == data).all() | |
| > assert (hdul[0].data[100:] == 0).all() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:435: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ____________________________________________________________________________________ TestCore.test_consecutive_writeto ____________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestCore object at 0x000000011f238d08> | |
| def test_consecutive_writeto(self): | |
| """ | |
| Regression test for an issue where calling writeto twice on the same | |
| HDUList could write a corrupted file. | |
| https://github.com/spacetelescope/PyFITS/issues/40 is actually a | |
| particular instance of this problem, though isn't unique to sys.stdout. | |
| """ | |
| with fits.open(self.data('test0.fits')) as hdul1: | |
| # Add a bunch of header keywords so that the data will be forced to | |
| # new offsets within the file: | |
| for idx in range(40): | |
| hdul1[1].header['TEST{}'.format(idx)] = 'test' | |
| hdul1.writeto(self.temp('test1.fits')) | |
| hdul1.writeto(self.temp('test2.fits')) | |
| # Open a second handle to the original file and compare it to hdul1 | |
| # (We only compare part of the one header that was modified) | |
| # Compare also with the second writeto output | |
| with fits.open(self.data('test0.fits')) as hdul2: | |
| with fits.open(self.temp('test2.fits')) as hdul3: | |
| for hdul in (hdul1, hdul3): | |
| for idx, hdus in enumerate(zip(hdul2, hdul)): | |
| hdu2, hdu = hdus | |
| if idx != 1: | |
| assert hdu.header == hdu2.header | |
| else: | |
| assert (hdu2.header == | |
| hdu.header[:len(hdu2.header)]) | |
| > assert np.all(hdu.data == hdu2.data) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:532: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x00000001182ebec0>, <astropy.io.fits.hdu.image.ImageHDU object at 0x...ts.hdu.image.ImageHDU object at 0x000000012a9bf9b8>, <astropy.io.fits.hdu.image.ImageHDU object at 0x000000012a9e5cc8>] | |
| type = None, value = None, traceback = None | |
| def __exit__(self, type, value, traceback): | |
| > self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x00000001182ebec0>, <astropy.io.fits.hdu.image.ImageHDU object at 0x...ts.hdu.image.ImageHDU object at 0x000000012a9bf9b8>, <astropy.io.fits.hdu.image.ImageHDU object at 0x000000012a9e5cc8>] | |
| output_verify = 'exception', verbose = False, closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| self.flush(output_verify=output_verify, verbose=verbose) | |
| finally: | |
| if self._file and closed and hasattr(self._file, 'close'): | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_core.TestCore object at 0x000000011f238d08> | |
| def test_consecutive_writeto(self): | |
| """ | |
| Regression test for an issue where calling writeto twice on the same | |
| HDUList could write a corrupted file. | |
| https://github.com/spacetelescope/PyFITS/issues/40 is actually a | |
| particular instance of this problem, though isn't unique to sys.stdout. | |
| """ | |
| with fits.open(self.data('test0.fits')) as hdul1: | |
| # Add a bunch of header keywords so that the data will be forced to | |
| # new offsets within the file: | |
| for idx in range(40): | |
| hdul1[1].header['TEST{}'.format(idx)] = 'test' | |
| hdul1.writeto(self.temp('test1.fits')) | |
| hdul1.writeto(self.temp('test2.fits')) | |
| # Open a second handle to the original file and compare it to hdul1 | |
| # (We only compare part of the one header that was modified) | |
| # Compare also with the second writeto output | |
| with fits.open(self.data('test0.fits')) as hdul2: | |
| with fits.open(self.temp('test2.fits')) as hdul3: | |
| for hdul in (hdul1, hdul3): | |
| for idx, hdus in enumerate(zip(hdul2, hdul)): | |
| hdu2, hdu = hdus | |
| if idx != 1: | |
| assert hdu.header == hdu2.header | |
| else: | |
| assert (hdu2.header == | |
| hdu.header[:len(hdu2.header)]) | |
| > assert np.all(hdu.data == hdu2.data) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:532: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x00000001183a9718>, <astropy.io.fits.hdu.image.ImageHDU object at 0x...ts.hdu.image.ImageHDU object at 0x0000000139d808e0>, <astropy.io.fits.hdu.image.ImageHDU object at 0x000000012a900d78>] | |
| type = <class 'AttributeError'>, value = AttributeError("module 'sys' has no attribute 'getrefcount'",), traceback = <traceback object at 0x000000012c3714e0> | |
| def __exit__(self, type, value, traceback): | |
| > self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x00000001183a9718>, <astropy.io.fits.hdu.image.ImageHDU object at 0x...ts.hdu.image.ImageHDU object at 0x0000000139d808e0>, <astropy.io.fits.hdu.image.ImageHDU object at 0x000000012a900d78>] | |
| output_verify = 'exception', verbose = False, closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| self.flush(output_verify=output_verify, verbose=verbose) | |
| finally: | |
| if self._file and closed and hasattr(self._file, 'close'): | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_core.TestCore object at 0x000000011f238d08> | |
| def test_consecutive_writeto(self): | |
| """ | |
| Regression test for an issue where calling writeto twice on the same | |
| HDUList could write a corrupted file. | |
| https://github.com/spacetelescope/PyFITS/issues/40 is actually a | |
| particular instance of this problem, though isn't unique to sys.stdout. | |
| """ | |
| with fits.open(self.data('test0.fits')) as hdul1: | |
| # Add a bunch of header keywords so that the data will be forced to | |
| # new offsets within the file: | |
| for idx in range(40): | |
| hdul1[1].header['TEST{}'.format(idx)] = 'test' | |
| hdul1.writeto(self.temp('test1.fits')) | |
| hdul1.writeto(self.temp('test2.fits')) | |
| # Open a second handle to the original file and compare it to hdul1 | |
| # (We only compare part of the one header that was modified) | |
| # Compare also with the second writeto output | |
| with fits.open(self.data('test0.fits')) as hdul2: | |
| with fits.open(self.temp('test2.fits')) as hdul3: | |
| for hdul in (hdul1, hdul3): | |
| for idx, hdus in enumerate(zip(hdul2, hdul)): | |
| hdu2, hdu = hdus | |
| if idx != 1: | |
| assert hdu.header == hdu2.header | |
| else: | |
| assert (hdu2.header == | |
| hdu.header[:len(hdu2.header)]) | |
| > assert np.all(hdu.data == hdu2.data) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:532: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________ TestFileFunctions.test_updated_file_permissions _____________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestFileFunctions object at 0x00000001380fbfa0> | |
| def test_updated_file_permissions(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/79 | |
| Tests that when a FITS file is modified in update mode, the file | |
| permissions are preserved. | |
| """ | |
| filename = self.temp('test.fits') | |
| hdul = [fits.PrimaryHDU(), fits.ImageHDU()] | |
| hdul = fits.HDUList(hdul) | |
| hdul.writeto(filename) | |
| old_mode = os.stat(filename).st_mode | |
| hdul = fits.open(filename, mode='update') | |
| hdul.insert(1, fits.ImageHDU()) | |
| > hdul.flush() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:933: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:827: in flush | |
| func = make_function_with_signature(func, name=name, **wrapped_args) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/util.py:233: in wrapped | |
| func(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:770: in flush | |
| self._flush_update() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1186: in _flush_update | |
| self._flush_resize() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1232: in _flush_resize | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________________ TestFileFunctions.test_mmap_unwriteable _________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestFileFunctions object at 0x0000000135af40c8> | |
| def test_mmap_unwriteable(self): | |
| """Regression test for https://github.com/astropy/astropy/issues/968 | |
| Temporarily patches mmap.mmap to exhibit platform-specific bad | |
| behavior. | |
| """ | |
| class MockMmap(mmap.mmap): | |
| def flush(self): | |
| raise OSError('flush is broken on this platform') | |
| old_mmap = mmap.mmap | |
| mmap.mmap = MockMmap | |
| # Force the mmap test to be rerun | |
| _File.__dict__['_mmap_available']._cache.clear() | |
| try: | |
| self.copy_file('test0.fits') | |
| with catch_warnings() as w: | |
| with fits.open(self.temp('test0.fits'), mode='update', | |
| memmap=True) as h: | |
| h[1].data[0, 0] = 999 | |
| assert len(w) == 1 | |
| assert 'mmap.flush is unavailable' in str(w[0].message) | |
| # Double check that writing without mmap still worked | |
| with fits.open(self.temp('test0.fits')) as h: | |
| > assert h[1].data[0, 0] == 999 | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:1013: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________________ TestFileFunctions.test_mmap_closing ___________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestFileFunctions object at 0x000000012aa325d0> | |
| def test_mmap_closing(self): | |
| """ | |
| Tests that the mmap reference is closed/removed when there aren't any | |
| HDU data references left. | |
| """ | |
| if not _File._mmap_available: | |
| pytest.xfail('not expected to work on platforms without mmap ' | |
| 'support') | |
| with fits.open(self.data('test0.fits'), memmap=True) as hdul: | |
| assert hdul._file._mmap is None | |
| hdul[1].data | |
| assert hdul._file._mmap is not None | |
| > del hdul[1].data | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:1034: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.utils.decorators.lazyproperty object at 0x000000011459eea0>, obj = <astropy.io.fits.hdu.image.ImageHDU object at 0x000000012a9abc20> | |
| def __delete__(self, obj): | |
| if self.fdel: | |
| > self.fdel(obj) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:732: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.hdu.image.ImageHDU object at 0x000000012a9abc20> | |
| def data(self): | |
| # The deleter | |
| if self._file is not None and self._data_loaded: | |
| > data_refcount = sys.getrefcount(self.data) | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/base.py:106: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_core.TestFileFunctions object at 0x000000012aa325d0> | |
| def test_mmap_closing(self): | |
| """ | |
| Tests that the mmap reference is closed/removed when there aren't any | |
| HDU data references left. | |
| """ | |
| if not _File._mmap_available: | |
| pytest.xfail('not expected to work on platforms without mmap ' | |
| 'support') | |
| with fits.open(self.data('test0.fits'), memmap=True) as hdul: | |
| assert hdul._file._mmap is None | |
| hdul[1].data | |
| assert hdul._file._mmap is not None | |
| del hdul[1].data | |
| # Should be no more references to data in the file so close the | |
| # mmap | |
| assert hdul._file._mmap is None | |
| hdul[1].data | |
| hdul[2].data | |
| del hdul[1].data | |
| # hdul[2].data is still references so keep the mmap open | |
| assert hdul._file._mmap is not None | |
| del hdul[2].data | |
| > assert hdul._file._mmap is None | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:1045: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________________ TestFileFunctions.test_uncloseable_file _________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestFileFunctions object at 0x0000000118c90950> | |
| def test_uncloseable_file(self): | |
| """ | |
| Regression test for https://github.com/astropy/astropy/issues/2356 | |
| Demonstrates that FITS files can still be read from "file-like" objects | |
| that don't have an obvious "open" or "closed" state. | |
| """ | |
| class MyFileLike: | |
| def __init__(self, foobar): | |
| self._foobar = foobar | |
| def read(self, n): | |
| return self._foobar.read(n) | |
| def seek(self, offset, whence=os.SEEK_SET): | |
| self._foobar.seek(offset, whence) | |
| def tell(self): | |
| return self._foobar.tell() | |
| with open(self.data('test0.fits'), 'rb') as f: | |
| fileobj = MyFileLike(f) | |
| with fits.open(fileobj) as hdul1: | |
| with fits.open(self.data('test0.fits')) as hdul2: | |
| assert hdul1.info(output=False) == hdul2.info(output=False) | |
| for hdu1, hdu2 in zip(hdul1, hdul2): | |
| assert hdu1.header == hdu2.header | |
| if hdu1.data is not None and hdu2.data is not None: | |
| > assert np.all(hdu1.data == hdu2.data) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:1098: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| __________________________________________________________________________________ TestFileFunctions.test_write_bytesio ___________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestFileFunctions object at 0x0000000135f657c0> | |
| def test_write_bytesio(self): | |
| """ | |
| Regression test for https://github.com/astropy/astropy/issues/2463 | |
| Test againt `io.BytesIO`. `io.StringIO` is not supported. | |
| """ | |
| > self._test_write_string_bytes_io(io.BytesIO()) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:1126: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:1210: in _test_write_string_bytes_io | |
| assert FITSDiff(hdul, hdul2).identical | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _______________________________________________________________________________ TestFileFunctions.test_filename_with_colon ________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestFileFunctions object at 0x0000000129ae3be8> | |
| @pytest.mark.skipif(str('sys.platform.startswith("win32")')) | |
| def test_filename_with_colon(self): | |
| """ | |
| Test reading and writing a file with a colon in the filename. | |
| Regression test for https://github.com/astropy/astropy/issues/3122 | |
| """ | |
| # Skip on Windows since colons in filenames makes NTFS sad. | |
| filename = 'APEXHET.2014-04-01T15:18:01.000.fits' | |
| hdu = fits.PrimaryHDU(data=np.arange(10)) | |
| hdu.writeto(self.temp(filename)) | |
| with fits.open(self.temp(filename)) as hdul: | |
| > assert np.all(hdul[0].data == hdu.data) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:1143: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________________ TestStreamingFunctions.test_blank_ignore _________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_core.TestStreamingFunctions object at 0x0000000122356950> | |
| def test_blank_ignore(self): | |
| with fits.open(self.data('blank.fits'), ignore_blank=True) as f: | |
| > assert f[0].data.flat[0] == 2 | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_core.py:1322: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________________ TestDiff.test_identical_files_basic ___________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_diff.TestDiff object at 0x00000001161a9018> | |
| def test_identical_files_basic(self): | |
| """Test identicality of two simple, extensionless files.""" | |
| a = np.arange(100).reshape(10, 10) | |
| hdu = PrimaryHDU(data=a) | |
| hdu.writeto(self.temp('testa.fits')) | |
| hdu.writeto(self.temp('testb.fits')) | |
| > diff = FITSDiff(self.temp('testa.fits'), self.temp('testb.fits')) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_diff.py:573: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________________________ TestFitscheck.test_valid_file ______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitscheck.TestFitscheck object at 0x0000000120952598>, capsys = <_pytest.capture.CaptureFixture object at 0x0000000120952058> | |
| def test_valid_file(self, capsys): | |
| testfile = self.data('checksum.fits') | |
| > assert fitscheck.main([testfile]) == 0 | |
| E AssertionError: assert 1 == 0 | |
| E + where 1 = <function main at 0x0000000117073a60>(['/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/data/checksum.fits']) | |
| E + where <function main at 0x0000000117073a60> = fitscheck.main | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitscheck.py:23: AssertionError | |
| ------------------------------------------------------------------------------------------ Captured stderr call ------------------------------------------------------------------------------------------- | |
| --- Logging error --- | |
| Traceback (most recent call last): | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitscheck.py", line 186, in process_file | |
| checksum_errors = verify_checksums(filename) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitscheck.py", line 141, in verify_checksums | |
| return 1 | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py", line 371, in __exit__ | |
| self.close() | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py", line 894, in close | |
| self._file.close() | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py", line 374, in close | |
| self._maybe_close_mmap() | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py", line 392, in _maybe_close_mmap | |
| sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| AttributeError: module 'sys' has no attribute 'getrefcount' | |
| During handling of the above exception, another exception occurred: | |
| Traceback (most recent call last): | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/logging/__init__.py", line 988, in emit | |
| stream.write(msg) | |
| ValueError: I/O operation on closed file | |
| Call stack: | |
| File "<string>", line 1, in <module> | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py", line 827, in test | |
| func = make_function_with_signature(func, name=name, **wrapped_args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/tests/runner.py", line 260, in test | |
| return runner.run_tests(**kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/tests/runner.py", line 601, in run_tests | |
| return super(TestRunner, self).run_tests(**kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/tests/runner.py", line 242, in run_tests | |
| return pytest.main(args=args, plugins=plugins) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/config/__init__.py", line 65, in main | |
| return config.hook.pytest_cmdline_main(config=config) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py", line 258, in __call__ | |
| return self._hookexec(self, self._nonwrappers + self._wrappers, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 67, in _hookexec | |
| return self._inner_hookexec(hook, methods, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 61, in <lambda> | |
| firstresult=hook.spec_opts.get('firstresult'), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/callers.py", line 180, in _multicall | |
| res = hook_impl.function(*args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/main.py", line 208, in pytest_cmdline_main | |
| return wrap_session(config, _main) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/main.py", line 178, in wrap_session | |
| session.exitstatus = doit(config, session) or 0 | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/main.py", line 215, in _main | |
| config.hook.pytest_runtestloop(session=session) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py", line 258, in __call__ | |
| return self._hookexec(self, self._nonwrappers + self._wrappers, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 67, in _hookexec | |
| return self._inner_hookexec(hook, methods, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 61, in <lambda> | |
| firstresult=hook.spec_opts.get('firstresult'), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/callers.py", line 180, in _multicall | |
| res = hook_impl.function(*args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/main.py", line 236, in pytest_runtestloop | |
| item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py", line 258, in __call__ | |
| return self._hookexec(self, self._nonwrappers + self._wrappers, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 67, in _hookexec | |
| return self._inner_hookexec(hook, methods, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 61, in <lambda> | |
| firstresult=hook.spec_opts.get('firstresult'), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/callers.py", line 180, in _multicall | |
| res = hook_impl.function(*args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 66, in pytest_runtest_protocol | |
| runtestprotocol(item, nextitem=nextitem) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 81, in runtestprotocol | |
| reports.append(call_and_report(item, "call", log)) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 161, in call_and_report | |
| call = call_runtest_hook(item, when, **kwds) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 185, in call_runtest_hook | |
| treat_keyboard_interrupt_as_exception=item.config.getvalue("usepdb"), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 201, in __init__ | |
| self.result = func() | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 183, in <lambda> | |
| lambda: ihook(item=item, **kwds), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py", line 258, in __call__ | |
| return self._hookexec(self, self._nonwrappers + self._wrappers, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 67, in _hookexec | |
| return self._inner_hookexec(hook, methods, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 61, in <lambda> | |
| firstresult=hook.spec_opts.get('firstresult'), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/callers.py", line 180, in _multicall | |
| res = hook_impl.function(*args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 111, in pytest_runtest_call | |
| item.runtest() | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py", line 1430, in runtest | |
| self.ihook.pytest_pyfunc_call(pyfuncitem=self) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py", line 258, in __call__ | |
| return self._hookexec(self, self._nonwrappers + self._wrappers, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 67, in _hookexec | |
| return self._inner_hookexec(hook, methods, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 61, in <lambda> | |
| firstresult=hook.spec_opts.get('firstresult'), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/callers.py", line 180, in _multicall | |
| res = hook_impl.function(*args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py", line 196, in pytest_pyfunc_call | |
| testfunction(**testargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitscheck.py", line 23, in test_valid_file | |
| assert fitscheck.main([testfile]) == 0 | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitscheck.py", line 209, in main | |
| errors += process_file(filename) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitscheck.py", line 195, in process_file | |
| log.error('EXCEPTION {!r} .. {}'.format(filename, e)) | |
| Message: "EXCEPTION '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/data/checksum.fits' .. module 'sys' has no attribute 'getrefcount'" | |
| Arguments: () | |
| EXCEPTION '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/data/checksum.fits' .. module 'sys' has no attribute 'getrefcount' | |
| --- Logging error --- | |
| Traceback (most recent call last): | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/lib-python/3/logging/__init__.py", line 988, in emit | |
| stream.write(msg) | |
| ValueError: I/O operation on closed file | |
| Call stack: | |
| File "<string>", line 1, in <module> | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py", line 827, in test | |
| func = make_function_with_signature(func, name=name, **wrapped_args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/tests/runner.py", line 260, in test | |
| return runner.run_tests(**kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/tests/runner.py", line 601, in run_tests | |
| return super(TestRunner, self).run_tests(**kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/tests/runner.py", line 242, in run_tests | |
| return pytest.main(args=args, plugins=plugins) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/config/__init__.py", line 65, in main | |
| return config.hook.pytest_cmdline_main(config=config) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py", line 258, in __call__ | |
| return self._hookexec(self, self._nonwrappers + self._wrappers, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 67, in _hookexec | |
| return self._inner_hookexec(hook, methods, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 61, in <lambda> | |
| firstresult=hook.spec_opts.get('firstresult'), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/callers.py", line 180, in _multicall | |
| res = hook_impl.function(*args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/main.py", line 208, in pytest_cmdline_main | |
| return wrap_session(config, _main) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/main.py", line 178, in wrap_session | |
| session.exitstatus = doit(config, session) or 0 | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/main.py", line 215, in _main | |
| config.hook.pytest_runtestloop(session=session) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py", line 258, in __call__ | |
| return self._hookexec(self, self._nonwrappers + self._wrappers, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 67, in _hookexec | |
| return self._inner_hookexec(hook, methods, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 61, in <lambda> | |
| firstresult=hook.spec_opts.get('firstresult'), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/callers.py", line 180, in _multicall | |
| res = hook_impl.function(*args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/main.py", line 236, in pytest_runtestloop | |
| item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py", line 258, in __call__ | |
| return self._hookexec(self, self._nonwrappers + self._wrappers, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 67, in _hookexec | |
| return self._inner_hookexec(hook, methods, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 61, in <lambda> | |
| firstresult=hook.spec_opts.get('firstresult'), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/callers.py", line 180, in _multicall | |
| res = hook_impl.function(*args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 66, in pytest_runtest_protocol | |
| runtestprotocol(item, nextitem=nextitem) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 81, in runtestprotocol | |
| reports.append(call_and_report(item, "call", log)) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 161, in call_and_report | |
| call = call_runtest_hook(item, when, **kwds) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 185, in call_runtest_hook | |
| treat_keyboard_interrupt_as_exception=item.config.getvalue("usepdb"), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 201, in __init__ | |
| self.result = func() | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 183, in <lambda> | |
| lambda: ihook(item=item, **kwds), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py", line 258, in __call__ | |
| return self._hookexec(self, self._nonwrappers + self._wrappers, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 67, in _hookexec | |
| return self._inner_hookexec(hook, methods, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 61, in <lambda> | |
| firstresult=hook.spec_opts.get('firstresult'), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/callers.py", line 180, in _multicall | |
| res = hook_impl.function(*args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/runner.py", line 111, in pytest_runtest_call | |
| item.runtest() | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py", line 1430, in runtest | |
| self.ihook.pytest_pyfunc_call(pyfuncitem=self) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/hooks.py", line 258, in __call__ | |
| return self._hookexec(self, self._nonwrappers + self._wrappers, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 67, in _hookexec | |
| return self._inner_hookexec(hook, methods, kwargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/manager.py", line 61, in <lambda> | |
| firstresult=hook.spec_opts.get('firstresult'), | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/pluggy/callers.py", line 180, in _multicall | |
| res = hook_impl.function(*args) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/_pytest/python.py", line 196, in pytest_pyfunc_call | |
| testfunction(**testargs) | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitscheck.py", line 23, in test_valid_file | |
| assert fitscheck.main([testfile]) == 0 | |
| File "/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitscheck.py", line 211, in main | |
| log.warning('{} errors'.format(errors)) | |
| Message: '1 errors' | |
| Arguments: () | |
| 1 errors | |
| -------------------------------------------------------------------------------------------- Captured log call -------------------------------------------------------------------------------------------- | |
| fitscheck.py 195 ERROR EXCEPTION '/Users/deil/software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/data/checksum.fits' .. module 'sys' has no attribute 'getrefcount' | |
| fitscheck.py 211 WARNING 1 errors | |
| __________________________________________________________________________________ TestFitscheck.test_overwrite_invalid ___________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitscheck.TestFitscheck object at 0x000000011c3eec98>, capsys = <_pytest.capture.CaptureFixture object at 0x000000011c3ee288> | |
| def test_overwrite_invalid(self, capsys): | |
| """ | |
| Tests that invalid checksum or datasum are overwriten when the file is | |
| saved. | |
| """ | |
| reffile = self.temp('ref.fits') | |
| with fits.open(self.data('tb.fits')) as hdul: | |
| > hdul.writeto(reffile, checksum=True) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitscheck.py:56: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________________ TestFITSDiff_script.test_nodiff _____________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x000000012c28fc58> | |
| def test_nodiff(self): | |
| a = np.arange(100).reshape(10, 10) | |
| hdu_a = PrimaryHDU(data=a) | |
| b = a.copy() | |
| hdu_b = PrimaryHDU(data=b) | |
| tmp_a = self.temp('testa.fits') | |
| tmp_b = self.temp('testb.fits') | |
| hdu_a.writeto(tmp_a) | |
| hdu_b.writeto(tmp_b) | |
| > numdiff = fitsdiff.main([tmp_a, tmp_b]) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:37: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitsdiff.py:327: in main | |
| ignore_blank_cards=opts.ignore_blank_cards) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ____________________________________________________________________________________ TestFITSDiff_script.test_onediff _____________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x0000000118c6af70> | |
| def test_onediff(self): | |
| a = np.arange(100).reshape(10, 10) | |
| hdu_a = PrimaryHDU(data=a) | |
| b = a.copy() | |
| b[1, 0] = 12 | |
| hdu_b = PrimaryHDU(data=b) | |
| tmp_a = self.temp('testa.fits') | |
| tmp_b = self.temp('testb.fits') | |
| hdu_a.writeto(tmp_a) | |
| hdu_b.writeto(tmp_b) | |
| > numdiff = fitsdiff.main([tmp_a, tmp_b]) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:50: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitsdiff.py:327: in main | |
| ignore_blank_cards=opts.ignore_blank_cards) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ____________________________________________________________________________________ TestFITSDiff_script.test_manydiff ____________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x0000000112b146e8>, capsys = <_pytest.capture.CaptureFixture object at 0x0000000112b14330> | |
| def test_manydiff(self, capsys): | |
| a = np.arange(100).reshape(10, 10) | |
| hdu_a = PrimaryHDU(data=a) | |
| b = a + 1 | |
| hdu_b = PrimaryHDU(data=b) | |
| tmp_a = self.temp('testa.fits') | |
| tmp_b = self.temp('testb.fits') | |
| hdu_a.writeto(tmp_a) | |
| hdu_b.writeto(tmp_b) | |
| > numdiff = fitsdiff.main([tmp_a, tmp_b]) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:63: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitsdiff.py:327: in main | |
| ignore_blank_cards=opts.ignore_blank_cards) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________________ TestFITSDiff_script.test_outputfile ___________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x000000012ab2dd00> | |
| def test_outputfile(self): | |
| a = np.arange(100).reshape(10, 10) | |
| hdu_a = PrimaryHDU(data=a) | |
| b = a.copy() | |
| b[1, 0] = 12 | |
| hdu_b = PrimaryHDU(data=b) | |
| tmp_a = self.temp('testa.fits') | |
| tmp_b = self.temp('testb.fits') | |
| hdu_a.writeto(tmp_a) | |
| hdu_b.writeto(tmp_b) | |
| > numdiff = fitsdiff.main(['-o', self.temp('diff.txt'), tmp_a, tmp_b]) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:92: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitsdiff.py:327: in main | |
| ignore_blank_cards=opts.ignore_blank_cards) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________________________ TestFITSDiff_script.test_atol ______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x00000001389b2368> | |
| def test_atol(self): | |
| a = np.arange(100, dtype=float).reshape(10, 10) | |
| hdu_a = PrimaryHDU(data=a) | |
| b = a.copy() | |
| b[1, 0] = 11 | |
| hdu_b = PrimaryHDU(data=b) | |
| tmp_a = self.temp('testa.fits') | |
| tmp_b = self.temp('testb.fits') | |
| hdu_a.writeto(tmp_a) | |
| hdu_b.writeto(tmp_b) | |
| > numdiff = fitsdiff.main(["-a", "1", tmp_a, tmp_b]) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:113: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitsdiff.py:327: in main | |
| ignore_blank_cards=opts.ignore_blank_cards) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________________________ TestFITSDiff_script.test_rtol ______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x0000000114e473d0> | |
| def test_rtol(self): | |
| a = np.arange(100, dtype=float).reshape(10, 10) | |
| hdu_a = PrimaryHDU(data=a) | |
| b = a.copy() | |
| b[1, 0] = 11 | |
| hdu_b = PrimaryHDU(data=b) | |
| tmp_a = self.temp('testa.fits') | |
| tmp_b = self.temp('testb.fits') | |
| hdu_a.writeto(tmp_a) | |
| hdu_b.writeto(tmp_b) | |
| > numdiff = fitsdiff.main(["-r", "1e-1", tmp_a, tmp_b]) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:129: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitsdiff.py:327: in main | |
| ignore_blank_cards=opts.ignore_blank_cards) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________________ TestFITSDiff_script.test_rtol_diff ____________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x0000000138e30640>, capsys = <_pytest.capture.CaptureFixture object at 0x0000000138e302c0> | |
| def test_rtol_diff(self, capsys): | |
| a = np.arange(100, dtype=float).reshape(10, 10) | |
| hdu_a = PrimaryHDU(data=a) | |
| b = a.copy() | |
| b[1, 0] = 11 | |
| hdu_b = PrimaryHDU(data=b) | |
| tmp_a = self.temp('testa.fits') | |
| tmp_b = self.temp('testb.fits') | |
| hdu_a.writeto(tmp_a) | |
| hdu_b.writeto(tmp_b) | |
| > numdiff = fitsdiff.main(["-r", "1e-2", tmp_a, tmp_b]) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:142: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitsdiff.py:327: in main | |
| ignore_blank_cards=opts.ignore_blank_cards) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| __________________________________________________________________________ TestFITSDiff_script.test_fitsdiff_script_both_d_and_r __________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x000000011c3caad8>, capsys = <_pytest.capture.CaptureFixture object at 0x000000011c3ca1e0> | |
| def test_fitsdiff_script_both_d_and_r(self, capsys): | |
| a = np.arange(100).reshape(10, 10) | |
| hdu_a = PrimaryHDU(data=a) | |
| b = a.copy() | |
| hdu_b = PrimaryHDU(data=b) | |
| tmp_a = self.temp('testa.fits') | |
| tmp_b = self.temp('testb.fits') | |
| hdu_a.writeto(tmp_a) | |
| hdu_b.writeto(tmp_b) | |
| with catch_warnings(AstropyDeprecationWarning) as warning_lines: | |
| > fitsdiff.main(["-r", "1e-4", "-d", "1e-2", tmp_a, tmp_b]) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:171: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitsdiff.py:327: in main | |
| ignore_blank_cards=opts.ignore_blank_cards) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________________ TestFITSDiff_script.test_not_quiet ____________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x000000011680a4f0>, capsys = <_pytest.capture.CaptureFixture object at 0x000000011682fb40> | |
| def test_not_quiet(self, capsys): | |
| a = np.arange(100).reshape(10, 10) | |
| hdu_a = PrimaryHDU(data=a) | |
| b = a.copy() | |
| hdu_b = PrimaryHDU(data=b) | |
| tmp_a = self.temp('testa.fits') | |
| tmp_b = self.temp('testb.fits') | |
| hdu_a.writeto(tmp_a) | |
| hdu_b.writeto(tmp_b) | |
| > numdiff = fitsdiff.main([tmp_a, tmp_b]) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:203: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitsdiff.py:327: in main | |
| ignore_blank_cards=opts.ignore_blank_cards) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________________ TestFITSDiff_script.test_quiet ______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x00000001232ea288>, capsys = <_pytest.capture.CaptureFixture object at 0x00000001232fda98> | |
| def test_quiet(self, capsys): | |
| a = np.arange(100).reshape(10, 10) | |
| hdu_a = PrimaryHDU(data=a) | |
| b = a.copy() | |
| hdu_b = PrimaryHDU(data=b) | |
| tmp_a = self.temp('testa.fits') | |
| tmp_b = self.temp('testb.fits') | |
| hdu_a.writeto(tmp_a) | |
| hdu_b.writeto(tmp_b) | |
| > numdiff = fitsdiff.main(["-q", tmp_a, tmp_b]) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:225: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/scripts/fitsdiff.py:327: in main | |
| ignore_blank_cards=opts.ignore_blank_cards) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/diff.py:323: in __init__ | |
| a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________________________ TestFITSDiff_script.test_path ______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_fitsdiff.TestFITSDiff_script object at 0x0000000114ee6368>, capsys = <_pytest.capture.CaptureFixture object at 0x0000000114ee71d8> | |
| def test_path(self, capsys): | |
| os.mkdir(self.temp('sub/')) | |
| tmp_b = self.temp('sub/ascii.fits') | |
| tmp_g = self.temp('sub/group.fits') | |
| tmp_h = self.data('group.fits') | |
| with hdulist.fitsopen(tmp_h) as hdu_b: | |
| > hdu_b.writeto(tmp_g) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_fitsdiff.py:238: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________________________ TestGroupsFunctions.test_open ______________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_groups.TestGroupsFunctions object at 0x00000001224bc448> | |
| def test_open(self): | |
| with fits.open(self.data('random_groups.fits')) as hdul: | |
| assert isinstance(hdul[0], fits.GroupsHDU) | |
| naxes = (3, 1, 128, 1, 1) | |
| parameters = ['UU', 'VV', 'WW', 'BASELINE', 'DATE'] | |
| info = [(0, 'PRIMARY', 1, 'GroupsHDU', 147, naxes, 'float32', | |
| '3 Groups 5 Parameters')] | |
| assert hdul.info(output=False) == info | |
| ghdu = hdul[0] | |
| assert ghdu.parnames == parameters | |
| assert list(ghdu.data.dtype.names) == parameters + ['DATA'] | |
| assert isinstance(ghdu.data, fits.GroupData) | |
| # The data should be equal to the number of groups | |
| assert ghdu.header['GCOUNT'] == len(ghdu.data) | |
| assert ghdu.data.data.shape == (len(ghdu.data),) + naxes[::-1] | |
| assert ghdu.data.parnames == parameters | |
| assert isinstance(ghdu.data[0], fits.Group) | |
| assert len(ghdu.data[0]) == len(parameters) + 1 | |
| assert ghdu.data[0].data.shape == naxes[::-1] | |
| > assert ghdu.data[0].parnames == parameters | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_groups.py:37: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________ TestGroupsFunctions.test_random_groups_data_update ____________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_groups.TestGroupsFunctions object at 0x000000011a07ef38> | |
| def test_random_groups_data_update(self): | |
| """ | |
| Regression test for https://github.com/astropy/astropy/issues/3730 and | |
| for https://github.com/spacetelescope/PyFITS/issues/102 | |
| """ | |
| self.copy_file('random_groups.fits') | |
| with fits.open(self.temp('random_groups.fits'), mode='update') as h: | |
| > h[0].data['UU'] = 0.42 | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_groups.py:70: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ______________________________________________________________________________ TestGroupsFunctions.test_parnames_round_trip _______________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_groups.TestGroupsFunctions object at 0x0000000121954a68> | |
| def test_parnames_round_trip(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/130 | |
| Ensures that opening a random groups file in update mode or writing it | |
| to a new file does not cause any change to the parameter names. | |
| """ | |
| # Because this test tries to update the random_groups.fits file, let's | |
| # make a copy of it first (so that the file doesn't actually get | |
| # modified in the off chance that the test fails | |
| self.copy_file('random_groups.fits') | |
| parameters = ['UU', 'VV', 'WW', 'BASELINE', 'DATE'] | |
| with fits.open(self.temp('random_groups.fits'), mode='update') as h: | |
| assert h[0].parnames == parameters | |
| h.flush() | |
| # Open again just in read-only mode to ensure the parnames didn't | |
| # change | |
| with fits.open(self.temp('random_groups.fits')) as h: | |
| assert h[0].parnames == parameters | |
| > h.writeto(self.temp('test.fits')) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_groups.py:96: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________________ TestGroupsFunctions.test_groupdata_slice _________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_groups.TestGroupsFunctions object at 0x0000000136299980> | |
| def test_groupdata_slice(self): | |
| """ | |
| A simple test to ensure that slicing GroupData returns a new, smaller | |
| GroupData object, as is the case with a normal FITS_rec. This is a | |
| regression test for an as-of-yet unreported issue where slicing | |
| GroupData returned a single Group record. | |
| """ | |
| with fits.open(self.data('random_groups.fits')) as hdul: | |
| s = hdul[0].data[1:] | |
| assert isinstance(s, fits.GroupData) | |
| assert len(s) == 2 | |
| > assert hdul[0].data.parnames == s.parnames | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_groups.py:113: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| __________________________________________________________________________________ TestGroupsFunctions.test_group_slice ___________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_groups.TestGroupsFunctions object at 0x00000001220ef210> | |
| def test_group_slice(self): | |
| """ | |
| Tests basic slicing a single group record. | |
| """ | |
| # A very basic slice test | |
| with fits.open(self.data('random_groups.fits')) as hdul: | |
| g = hdul[0].data[0] | |
| s = g[2:4] | |
| assert len(s) == 2 | |
| assert s[0] == g[2] | |
| assert s[-1] == g[-3] | |
| s = g[::-1] | |
| assert len(s) == 6 | |
| assert (s[0] == g[-1]).all() | |
| assert s[-1] == g[0] | |
| s = g[::2] | |
| assert len(s) == 3 | |
| assert s[0] == g[0] | |
| assert s[1] == g[2] | |
| > assert s[2] == g[4] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_groups.py:135: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________________ TestGroupsFunctions.test_create_groupdata ________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_groups.TestGroupsFunctions object at 0x0000000120d27168> | |
| def test_create_groupdata(self): | |
| """ | |
| Basic test for creating GroupData from scratch. | |
| """ | |
| imdata = np.arange(100.0) | |
| imdata.shape = (10, 1, 1, 2, 5) | |
| pdata1 = np.arange(10, dtype=np.float32) + 0.1 | |
| pdata2 = 42.0 | |
| x = fits.hdu.groups.GroupData(imdata, parnames=['abc', 'xyz'], | |
| pardata=[pdata1, pdata2], bitpix=-32) | |
| assert x.parnames == ['abc', 'xyz'] | |
| assert (x.par('abc') == pdata1).all() | |
| assert (x.par('xyz') == ([pdata2] * len(x))).all() | |
| assert (x.data == imdata).all() | |
| # Test putting the data into a GroupsHDU and round-tripping it | |
| ghdu = fits.GroupsHDU(data=x) | |
| ghdu.writeto(self.temp('test.fits')) | |
| with fits.open(self.temp('test.fits')) as h: | |
| hdr = h[0].header | |
| assert hdr['GCOUNT'] == 10 | |
| assert hdr['PCOUNT'] == 2 | |
| assert hdr['NAXIS'] == 5 | |
| assert hdr['NAXIS1'] == 0 | |
| assert hdr['NAXIS2'] == 5 | |
| assert hdr['NAXIS3'] == 2 | |
| assert hdr['NAXIS4'] == 1 | |
| assert hdr['NAXIS5'] == 1 | |
| assert h[0].data.parnames == ['abc', 'xyz'] | |
| > assert comparerecords(h[0].data, x) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_groups.py:168: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________________ TestHDUListFunctions.test_update_filelike ________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x00000001396259f0> | |
| def test_update_filelike(self): | |
| """Test opening a file-like object in update mode and resizing the | |
| HDU. | |
| """ | |
| sf = io.BytesIO() | |
| arr = np.zeros((100, 100)) | |
| hdu = fits.PrimaryHDU(data=arr) | |
| hdu.writeto(sf) | |
| sf.seek(0) | |
| arr = np.zeros((200, 200)) | |
| hdul = fits.open(sf, mode='update') | |
| hdul[0].data = arr | |
| > hdul.flush() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:409: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:827: in flush | |
| func = make_function_with_signature(func, name=name, **wrapped_args) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/util.py:233: in wrapped | |
| func(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:770: in flush | |
| self._flush_update() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1186: in _flush_update | |
| self._flush_resize() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1297: in _flush_resize | |
| hdulist.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ____________________________________________________________________________ TestHDUListFunctions.test_replace_memmaped_array _____________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x0000000129305de0> | |
| def test_replace_memmaped_array(self): | |
| # Copy the original before we modify it | |
| hdul = fits.open(self.data('test0.fits')) | |
| hdul.writeto(self.temp('temp.fits')) | |
| hdul = fits.open(self.temp('temp.fits'), mode='update', memmap=True) | |
| old_data = hdul[1].data.copy() | |
| hdul[1].data = hdul[1].data + 1 | |
| > hdul.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:507: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _______________________________________________________________________ TestHDUListFunctions.test_open_file_with_bad_header_padding _______________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x0000000136c41c58> | |
| def test_open_file_with_bad_header_padding(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/136 | |
| Open files with nulls for header block padding instead of spaces. | |
| """ | |
| a = np.arange(100).reshape(10, 10) | |
| hdu = fits.PrimaryHDU(data=a) | |
| hdu.writeto(self.temp('temp.fits')) | |
| # Figure out where the header padding begins and fill it with nulls | |
| end_card_pos = str(hdu.header).index('END' + ' ' * 77) | |
| padding_start = end_card_pos + 80 | |
| padding_len = 2880 - padding_start | |
| with open(self.temp('temp.fits'), 'r+b') as f: | |
| f.seek(padding_start) | |
| f.write('\0'.encode('ascii') * padding_len) | |
| with catch_warnings(AstropyUserWarning) as w: | |
| with fits.open(self.temp('temp.fits')) as hdul: | |
| > assert (hdul[0].data == a).all() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:549: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________ TestHDUListFunctions.test_update_with_truncated_header __________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x0000000129d2c4f0> | |
| def test_update_with_truncated_header(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/148 | |
| Test that saving an update where the header is shorter than the | |
| original header doesn't leave a stump from the old header in the file. | |
| """ | |
| data = np.arange(100) | |
| hdu = fits.PrimaryHDU(data=data) | |
| idx = 1 | |
| while len(hdu.header) < 34: | |
| hdu.header['TEST{}'.format(idx)] = idx | |
| idx += 1 | |
| hdu.writeto(self.temp('temp.fits'), checksum=True) | |
| with fits.open(self.temp('temp.fits'), mode='update') as hdul: | |
| # Modify the header, forcing it to be rewritten | |
| > hdul[0].header['TEST1'] = 2 | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:574: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________ TestHDUListFunctions.test_update_resized_header _____________________________________________________________________________ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011cf054b0>], output_verify = 'exception', verbose = False, closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| > self.flush(output_verify=output_verify, verbose=verbose) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:891: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011cf054b0>], output_verify = 'exception', verbose = False | |
| > func = make_function_with_signature(func, name=name, **wrapped_args) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:827: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| args = ([<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011cf054b0>],), kwargs = {'output_verify': 'exception', 'verbose': False} | |
| curr_thread = <_MainThread(MainThread, started 140736100262784)>, single_thread = True, SigintHandler = <class 'astropy.io.fits.util.ignore_sigint.<locals>.wrapped.<locals>.SigintHandler'> | |
| sigint_handler = <astropy.io.fits.util.ignore_sigint.<locals>.wrapped.<locals>.SigintHandler object at 0x000000011acd2a30>, old_handler = <built-in function default_int_handler> | |
| @wraps(func) | |
| def wrapped(*args, **kwargs): | |
| # Get the name of the current thread and determine if this is a single | |
| # threaded application | |
| curr_thread = threading.currentThread() | |
| single_thread = (threading.activeCount() == 1 and | |
| curr_thread.getName() == 'MainThread') | |
| class SigintHandler: | |
| def __init__(self): | |
| self.sigint_received = False | |
| def __call__(self, signum, frame): | |
| warnings.warn('KeyboardInterrupt ignored until {} is ' | |
| 'complete!'.format(func.__name__), | |
| AstropyUserWarning) | |
| self.sigint_received = True | |
| sigint_handler = SigintHandler() | |
| # Define new signal interput handler | |
| if single_thread: | |
| # Install new handler | |
| old_handler = signal.signal(signal.SIGINT, sigint_handler) | |
| try: | |
| > func(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/util.py:233: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011cf054b0>], output_verify = 'exception', verbose = False | |
| @ignore_sigint | |
| def flush(self, output_verify='fix', verbose=False): | |
| """ | |
| Force a write of the `HDUList` back to the file (for append and | |
| update modes only). | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print verbose messages | |
| """ | |
| if self._file.mode not in ('append', 'update', 'ostream'): | |
| warnings.warn("Flush for '{}' mode is not supported." | |
| .format(self._file.mode), AstropyUserWarning) | |
| return | |
| if self._save_backup and self._file.mode in ('append', 'update'): | |
| filename = self._file.name | |
| if os.path.exists(filename): | |
| # The the file doesn't actually exist anymore for some reason | |
| # then there's no point in trying to make a backup | |
| backup = filename + '.bak' | |
| idx = 1 | |
| while os.path.exists(backup): | |
| backup = filename + '.bak.' + str(idx) | |
| idx += 1 | |
| warnings.warn('Saving a backup of {} to {}.'.format( | |
| filename, backup), AstropyUserWarning) | |
| try: | |
| shutil.copy(filename, backup) | |
| except OSError as exc: | |
| raise OSError('Failed to save backup to destination {}: ' | |
| '{}'.format(filename, exc)) | |
| self.verify(option=output_verify) | |
| if self._file.mode in ('append', 'ostream'): | |
| for hdu in self: | |
| if verbose: | |
| try: | |
| extver = str(hdu._header['extver']) | |
| except KeyError: | |
| extver = '' | |
| # only append HDU's which are "new" | |
| if hdu._new: | |
| hdu._prewriteto(checksum=hdu._output_checksum) | |
| with _free_space_check(self): | |
| hdu._writeto(self._file) | |
| if verbose: | |
| print('append HDU', hdu.name, extver) | |
| hdu._new = False | |
| hdu._postwriteto() | |
| elif self._file.mode == 'update': | |
| > self._flush_update() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:770: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011cf054b0>] | |
| def _flush_update(self): | |
| """Implements flushing changes to a file in update mode.""" | |
| for hdu in self: | |
| # Need to all _prewriteto() for each HDU first to determine if | |
| # resizing will be necessary | |
| hdu._prewriteto(checksum=hdu._output_checksum, inplace=True) | |
| try: | |
| self._wasresized() | |
| # if the HDUList is resized, need to write out the entire contents of | |
| # the hdulist to the file. | |
| if self._resize or self._file.compression: | |
| > self._flush_resize() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1186: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011cf054b0>] | |
| def _flush_resize(self): | |
| """ | |
| Implements flushing changes in update mode when parts of one or more HDU | |
| need to be resized. | |
| """ | |
| old_name = self._file.name | |
| old_memmap = self._file.memmap | |
| name = _tmp_name(old_name) | |
| if not self._file.file_like: | |
| old_mode = os.stat(old_name).st_mode | |
| # The underlying file is an actual file object. The HDUList is | |
| # resized, so we need to write it to a tmp file, delete the | |
| # original file, and rename the tmp file to the original file. | |
| if self._file.compression == 'gzip': | |
| new_file = gzip.GzipFile(name, mode='ab+') | |
| elif self._file.compression == 'bzip2': | |
| new_file = bz2.BZ2File(name, mode='w') | |
| else: | |
| new_file = name | |
| with self.fromfile(new_file, mode='append') as hdulist: | |
| for hdu in self: | |
| hdu._writeto(hdulist._file, inplace=True, copy=True) | |
| if sys.platform.startswith('win'): | |
| # Collect a list of open mmaps to the data; this well be | |
| # used later. See below. | |
| mmaps = [(idx, _get_array_mmap(hdu.data), hdu.data) | |
| for idx, hdu in enumerate(self) if hdu._has_data] | |
| hdulist._file.close() | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1232: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x000000011bc69d70> | |
| @pytest.mark.xfail(platform.system() == 'Windows' and not NUMPY_LT_1_12, | |
| reason='https://github.com/astropy/astropy/issues/5797') | |
| def test_update_resized_header(self): | |
| """ | |
| Test saving updates to a file where the header is one block smaller | |
| than before, and in the case where the heade ris one block larger than | |
| before. | |
| """ | |
| data = np.arange(100) | |
| hdu = fits.PrimaryHDU(data=data) | |
| idx = 1 | |
| while len(str(hdu.header)) <= 2880: | |
| hdu.header['TEST{}'.format(idx)] = idx | |
| idx += 1 | |
| orig_header = hdu.header.copy() | |
| hdu.writeto(self.temp('temp.fits')) | |
| with fits.open(self.temp('temp.fits'), mode='update') as hdul: | |
| while len(str(hdul[0].header)) > 2880: | |
| > del hdul[0].header[-1] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:599: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ____________________________________________________________________________ TestHDUListFunctions.test_update_resized_header2 _____________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x000000012069afe0> | |
| def test_update_resized_header2(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/150 | |
| This is similar to test_update_resized_header, but specifically tests a | |
| case of multiple consecutive flush() calls on the same HDUList object, | |
| where each flush() requires a resize. | |
| """ | |
| data1 = np.arange(100) | |
| data2 = np.arange(100) + 100 | |
| phdu = fits.PrimaryHDU(data=data1) | |
| hdu = fits.ImageHDU(data=data2) | |
| phdu.writeto(self.temp('temp.fits')) | |
| with fits.open(self.temp('temp.fits'), mode='append') as hdul: | |
| hdul.append(hdu) | |
| with fits.open(self.temp('temp.fits'), mode='update') as hdul: | |
| idx = 1 | |
| while len(str(hdul[0].header)) <= 2880 * 2: | |
| hdul[0].header['TEST{}'.format(idx)] = idx | |
| idx += 1 | |
| > hdul.flush() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:642: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>], output_verify = 'fix', verbose = False | |
| > func = make_function_with_signature(func, name=name, **wrapped_args) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:827: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| args = ([<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>],), kwargs = {'output_verify': 'fix', 'verbose': False} | |
| curr_thread = <_MainThread(MainThread, started 140736100262784)>, single_thread = True, SigintHandler = <class 'astropy.io.fits.util.ignore_sigint.<locals>.wrapped.<locals>.SigintHandler'> | |
| sigint_handler = <astropy.io.fits.util.ignore_sigint.<locals>.wrapped.<locals>.SigintHandler object at 0x0000000120691360>, old_handler = <built-in function default_int_handler> | |
| @wraps(func) | |
| def wrapped(*args, **kwargs): | |
| # Get the name of the current thread and determine if this is a single | |
| # threaded application | |
| curr_thread = threading.currentThread() | |
| single_thread = (threading.activeCount() == 1 and | |
| curr_thread.getName() == 'MainThread') | |
| class SigintHandler: | |
| def __init__(self): | |
| self.sigint_received = False | |
| def __call__(self, signum, frame): | |
| warnings.warn('KeyboardInterrupt ignored until {} is ' | |
| 'complete!'.format(func.__name__), | |
| AstropyUserWarning) | |
| self.sigint_received = True | |
| sigint_handler = SigintHandler() | |
| # Define new signal interput handler | |
| if single_thread: | |
| # Install new handler | |
| old_handler = signal.signal(signal.SIGINT, sigint_handler) | |
| try: | |
| > func(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/util.py:233: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>], output_verify = 'fix', verbose = False | |
| @ignore_sigint | |
| def flush(self, output_verify='fix', verbose=False): | |
| """ | |
| Force a write of the `HDUList` back to the file (for append and | |
| update modes only). | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print verbose messages | |
| """ | |
| if self._file.mode not in ('append', 'update', 'ostream'): | |
| warnings.warn("Flush for '{}' mode is not supported." | |
| .format(self._file.mode), AstropyUserWarning) | |
| return | |
| if self._save_backup and self._file.mode in ('append', 'update'): | |
| filename = self._file.name | |
| if os.path.exists(filename): | |
| # The the file doesn't actually exist anymore for some reason | |
| # then there's no point in trying to make a backup | |
| backup = filename + '.bak' | |
| idx = 1 | |
| while os.path.exists(backup): | |
| backup = filename + '.bak.' + str(idx) | |
| idx += 1 | |
| warnings.warn('Saving a backup of {} to {}.'.format( | |
| filename, backup), AstropyUserWarning) | |
| try: | |
| shutil.copy(filename, backup) | |
| except OSError as exc: | |
| raise OSError('Failed to save backup to destination {}: ' | |
| '{}'.format(filename, exc)) | |
| self.verify(option=output_verify) | |
| if self._file.mode in ('append', 'ostream'): | |
| for hdu in self: | |
| if verbose: | |
| try: | |
| extver = str(hdu._header['extver']) | |
| except KeyError: | |
| extver = '' | |
| # only append HDU's which are "new" | |
| if hdu._new: | |
| hdu._prewriteto(checksum=hdu._output_checksum) | |
| with _free_space_check(self): | |
| hdu._writeto(self._file) | |
| if verbose: | |
| print('append HDU', hdu.name, extver) | |
| hdu._new = False | |
| hdu._postwriteto() | |
| elif self._file.mode == 'update': | |
| > self._flush_update() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:770: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>] | |
| def _flush_update(self): | |
| """Implements flushing changes to a file in update mode.""" | |
| for hdu in self: | |
| # Need to all _prewriteto() for each HDU first to determine if | |
| # resizing will be necessary | |
| hdu._prewriteto(checksum=hdu._output_checksum, inplace=True) | |
| try: | |
| self._wasresized() | |
| # if the HDUList is resized, need to write out the entire contents of | |
| # the hdulist to the file. | |
| if self._resize or self._file.compression: | |
| > self._flush_resize() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1186: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>] | |
| def _flush_resize(self): | |
| """ | |
| Implements flushing changes in update mode when parts of one or more HDU | |
| need to be resized. | |
| """ | |
| old_name = self._file.name | |
| old_memmap = self._file.memmap | |
| name = _tmp_name(old_name) | |
| if not self._file.file_like: | |
| old_mode = os.stat(old_name).st_mode | |
| # The underlying file is an actual file object. The HDUList is | |
| # resized, so we need to write it to a tmp file, delete the | |
| # original file, and rename the tmp file to the original file. | |
| if self._file.compression == 'gzip': | |
| new_file = gzip.GzipFile(name, mode='ab+') | |
| elif self._file.compression == 'bzip2': | |
| new_file = bz2.BZ2File(name, mode='w') | |
| else: | |
| new_file = name | |
| with self.fromfile(new_file, mode='append') as hdulist: | |
| for hdu in self: | |
| hdu._writeto(hdulist._file, inplace=True, copy=True) | |
| if sys.platform.startswith('win'): | |
| # Collect a list of open mmaps to the data; this well be | |
| # used later. See below. | |
| mmaps = [(idx, _get_array_mmap(hdu.data), hdu.data) | |
| for idx, hdu in enumerate(self) if hdu._has_data] | |
| hdulist._file.close() | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1232: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>], output_verify = 'exception', verbose = False | |
| closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| > self.flush(output_verify=output_verify, verbose=verbose) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:891: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>], output_verify = 'exception', verbose = False | |
| > func = make_function_with_signature(func, name=name, **wrapped_args) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:827: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| args = ([<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>],) | |
| kwargs = {'output_verify': 'exception', 'verbose': False}, curr_thread = <_MainThread(MainThread, started 140736100262784)>, single_thread = True | |
| SigintHandler = <class 'astropy.io.fits.util.ignore_sigint.<locals>.wrapped.<locals>.SigintHandler'> | |
| sigint_handler = <astropy.io.fits.util.ignore_sigint.<locals>.wrapped.<locals>.SigintHandler object at 0x00000001206919f0>, old_handler = <built-in function default_int_handler> | |
| @wraps(func) | |
| def wrapped(*args, **kwargs): | |
| # Get the name of the current thread and determine if this is a single | |
| # threaded application | |
| curr_thread = threading.currentThread() | |
| single_thread = (threading.activeCount() == 1 and | |
| curr_thread.getName() == 'MainThread') | |
| class SigintHandler: | |
| def __init__(self): | |
| self.sigint_received = False | |
| def __call__(self, signum, frame): | |
| warnings.warn('KeyboardInterrupt ignored until {} is ' | |
| 'complete!'.format(func.__name__), | |
| AstropyUserWarning) | |
| self.sigint_received = True | |
| sigint_handler = SigintHandler() | |
| # Define new signal interput handler | |
| if single_thread: | |
| # Install new handler | |
| old_handler = signal.signal(signal.SIGINT, sigint_handler) | |
| try: | |
| > func(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/util.py:233: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>], output_verify = 'exception', verbose = False | |
| @ignore_sigint | |
| def flush(self, output_verify='fix', verbose=False): | |
| """ | |
| Force a write of the `HDUList` back to the file (for append and | |
| update modes only). | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print verbose messages | |
| """ | |
| if self._file.mode not in ('append', 'update', 'ostream'): | |
| warnings.warn("Flush for '{}' mode is not supported." | |
| .format(self._file.mode), AstropyUserWarning) | |
| return | |
| if self._save_backup and self._file.mode in ('append', 'update'): | |
| filename = self._file.name | |
| if os.path.exists(filename): | |
| # The the file doesn't actually exist anymore for some reason | |
| # then there's no point in trying to make a backup | |
| backup = filename + '.bak' | |
| idx = 1 | |
| while os.path.exists(backup): | |
| backup = filename + '.bak.' + str(idx) | |
| idx += 1 | |
| warnings.warn('Saving a backup of {} to {}.'.format( | |
| filename, backup), AstropyUserWarning) | |
| try: | |
| shutil.copy(filename, backup) | |
| except OSError as exc: | |
| raise OSError('Failed to save backup to destination {}: ' | |
| '{}'.format(filename, exc)) | |
| self.verify(option=output_verify) | |
| if self._file.mode in ('append', 'ostream'): | |
| for hdu in self: | |
| if verbose: | |
| try: | |
| extver = str(hdu._header['extver']) | |
| except KeyError: | |
| extver = '' | |
| # only append HDU's which are "new" | |
| if hdu._new: | |
| hdu._prewriteto(checksum=hdu._output_checksum) | |
| with _free_space_check(self): | |
| hdu._writeto(self._file) | |
| if verbose: | |
| print('append HDU', hdu.name, extver) | |
| hdu._new = False | |
| hdu._postwriteto() | |
| elif self._file.mode == 'update': | |
| > self._flush_update() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:770: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>] | |
| def _flush_update(self): | |
| """Implements flushing changes to a file in update mode.""" | |
| for hdu in self: | |
| # Need to all _prewriteto() for each HDU first to determine if | |
| # resizing will be necessary | |
| hdu._prewriteto(checksum=hdu._output_checksum, inplace=True) | |
| try: | |
| self._wasresized() | |
| # if the HDUList is resized, need to write out the entire contents of | |
| # the hdulist to the file. | |
| if self._resize or self._file.compression: | |
| > self._flush_resize() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1186: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, <astropy.io.fits.hdu.image.ImageHDU object at 0x0000000120691408>] | |
| def _flush_resize(self): | |
| """ | |
| Implements flushing changes in update mode when parts of one or more HDU | |
| need to be resized. | |
| """ | |
| old_name = self._file.name | |
| old_memmap = self._file.memmap | |
| name = _tmp_name(old_name) | |
| if not self._file.file_like: | |
| old_mode = os.stat(old_name).st_mode | |
| # The underlying file is an actual file object. The HDUList is | |
| # resized, so we need to write it to a tmp file, delete the | |
| # original file, and rename the tmp file to the original file. | |
| if self._file.compression == 'gzip': | |
| new_file = gzip.GzipFile(name, mode='ab+') | |
| elif self._file.compression == 'bzip2': | |
| new_file = bz2.BZ2File(name, mode='w') | |
| else: | |
| new_file = name | |
| with self.fromfile(new_file, mode='append') as hdulist: | |
| for hdu in self: | |
| > hdu._writeto(hdulist._file, inplace=True, copy=True) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1224: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, fileobj = <astropy.io.fits.file._File <_io.FileIO [closed]>>, inplace = True, copy = True | |
| def _writeto(self, fileobj, inplace=False, copy=False): | |
| try: | |
| dirname = os.path.dirname(fileobj._file.name) | |
| except AttributeError: | |
| dirname = None | |
| with _free_space_check(self, dirname): | |
| > self._writeto_internal(fileobj, inplace, copy) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/base.py:642: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000012069bd38>, fileobj = <astropy.io.fits.file._File <_io.FileIO [closed]>>, inplace = True, copy = True | |
| def _writeto_internal(self, fileobj, inplace, copy): | |
| # For now fileobj is assumed to be a _File object | |
| if not inplace or self._new: | |
| header_offset, _ = self._writeheader(fileobj) | |
| data_offset, data_size = self._writedata(fileobj) | |
| # Set the various data location attributes on newly-written HDUs | |
| if self._new: | |
| self._header_offset = header_offset | |
| self._data_offset = data_offset | |
| self._data_size = data_size | |
| return | |
| hdrloc = self._header_offset | |
| hdrsize = self._data_offset - self._header_offset | |
| datloc = self._data_offset | |
| datsize = self._data_size | |
| if self._header._modified: | |
| # Seek to the original header location in the file | |
| > self._file.seek(hdrloc) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/base.py:664: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, offset = 0, whence = 0 | |
| def seek(self, offset, whence=0): | |
| if not hasattr(self._file, 'seek'): | |
| return | |
| > self._file.seek(offset, whence) | |
| E ValueError: I/O operation on closed file | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:350: ValueError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x000000012069afe0> | |
| def test_update_resized_header2(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/150 | |
| This is similar to test_update_resized_header, but specifically tests a | |
| case of multiple consecutive flush() calls on the same HDUList object, | |
| where each flush() requires a resize. | |
| """ | |
| data1 = np.arange(100) | |
| data2 = np.arange(100) + 100 | |
| phdu = fits.PrimaryHDU(data=data1) | |
| hdu = fits.ImageHDU(data=data2) | |
| phdu.writeto(self.temp('temp.fits')) | |
| with fits.open(self.temp('temp.fits'), mode='append') as hdul: | |
| hdul.append(hdu) | |
| with fits.open(self.temp('temp.fits'), mode='update') as hdul: | |
| idx = 1 | |
| while len(str(hdul[0].header)) <= 2880 * 2: | |
| hdul[0].header['TEST{}'.format(idx)] = idx | |
| idx += 1 | |
| hdul.flush() | |
| > hdul.append(hdu) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:643: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________________ TestHDUListFunctions.test_hdul_fromstring ________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x0000000136c3d440> | |
| @ignore_warnings() | |
| def test_hdul_fromstring(self): | |
| """ | |
| Test creating the HDUList structure in memory from a string containing | |
| an entire FITS file. This is similar to test_hdu_fromstring but for an | |
| entire multi-extension FITS file at once. | |
| """ | |
| # Tests HDUList.fromstring for all of Astropy's built in test files | |
| def test_fromstring(filename): | |
| with fits.open(filename) as hdul: | |
| orig_info = hdul.info(output=False) | |
| with open(filename, 'rb') as f: | |
| dat = f.read() | |
| hdul2 = fits.HDUList.fromstring(dat) | |
| assert orig_info == hdul2.info(output=False) | |
| for idx in range(len(hdul)): | |
| assert hdul[idx].header == hdul2[idx].header | |
| if hdul[idx].data is None or hdul2[idx].data is None: | |
| assert hdul[idx].data == hdul2[idx].data | |
| elif (hdul[idx].data.dtype.fields and | |
| hdul2[idx].data.dtype.fields): | |
| # Compare tables | |
| for n in hdul[idx].data.names: | |
| c1 = hdul[idx].data[n] | |
| c2 = hdul2[idx].data[n] | |
| assert (c1 == c2).all() | |
| elif (any(dim == 0 for dim in hdul[idx].data.shape) or | |
| any(dim == 0 for dim in hdul2[idx].data.shape)): | |
| # For some reason some combinations of Python and Numpy | |
| # on Windows result in MemoryErrors when trying to work | |
| # on memmap arrays with more than one dimension but | |
| # some dimensions of size zero, so include a special | |
| # case for that | |
| return hdul[idx].data.shape == hdul2[idx].data.shape | |
| else: | |
| np.testing.assert_array_equal(hdul[idx].data, | |
| hdul2[idx].data) | |
| for filename in glob.glob(os.path.join(self.data_dir, '*.fits')): | |
| if sys.platform == 'win32' and filename == 'zerowidth.fits': | |
| # Running this test on this file causes a crash in some | |
| # versions of Numpy on Windows. See ticket: | |
| # https://aeon.stsci.edu/ssb/trac/pyfits/ticket/174 | |
| continue | |
| elif filename.endswith('variable_length_table.fits'): | |
| # Comparing variable length arrays is non-trivial and thus | |
| # skipped at this point. | |
| # TODO: That's probably possible, so one could make it work. | |
| continue | |
| > test_fromstring(filename) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:703: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:690: in test_fromstring | |
| hdul2[idx].data) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| __________________________________________________________________________________ TestHDUListFunctions.test_save_backup __________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x0000000121a32fa8> | |
| def test_save_backup(self): | |
| """Test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/121 | |
| Save backup of file before flushing changes. | |
| """ | |
| self.copy_file('scale.fits') | |
| with ignore_warnings(): | |
| with fits.open(self.temp('scale.fits'), mode='update', | |
| save_backup=True) as hdul: | |
| # Make some changes to the original file to force its header | |
| # and data to be rewritten | |
| hdul[0].header['TEST'] = 'TEST' | |
| > hdul[0].data[0] = 0 | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:722: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _______________________________________________________________________________ TestHDUListFunctions.test_replace_mmap_data _______________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x000000011ed12218> | |
| def test_replace_mmap_data(self): | |
| """Regression test for | |
| https://github.com/spacetelescope/PyFITS/issues/25 | |
| Replacing the mmap'd data of one file with mmap'd data from a | |
| different file should work. | |
| """ | |
| arr_a = np.arange(10) | |
| arr_b = arr_a * 2 | |
| def test(mmap_a, mmap_b): | |
| hdu_a = fits.PrimaryHDU(data=arr_a) | |
| hdu_a.writeto(self.temp('test_a.fits'), overwrite=True) | |
| hdu_b = fits.PrimaryHDU(data=arr_b) | |
| hdu_b.writeto(self.temp('test_b.fits'), overwrite=True) | |
| hdul_a = fits.open(self.temp('test_a.fits'), mode='update', | |
| memmap=mmap_a) | |
| hdul_b = fits.open(self.temp('test_b.fits'), memmap=mmap_b) | |
| hdul_a[0].data = hdul_b[0].data | |
| hdul_a.close() | |
| hdul_b.close() | |
| hdul_a = fits.open(self.temp('test_a.fits')) | |
| assert np.all(hdul_a[0].data == arr_b) | |
| with ignore_warnings(): | |
| > test(True, True) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:771: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:763: in test | |
| hdul_a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:898: in close | |
| hdu._close(closed=closed) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/base.py:716: in _close | |
| del self.data | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:732: in __delete__ | |
| self.fdel(obj) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.hdu.image.PrimaryHDU object at 0x000000011ecfa218> | |
| def data(self): | |
| # The deleter | |
| if self._file is not None and self._data_loaded: | |
| > data_refcount = sys.getrefcount(self.data) | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/base.py:106: AttributeError | |
| ______________________________________________________________________________ TestHDUListFunctions.test_replace_mmap_data_2 ______________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_hdulist.TestHDUListFunctions object at 0x0000000137d3f750> | |
| def test_replace_mmap_data_2(self): | |
| """Regression test for | |
| https://github.com/spacetelescope/PyFITS/issues/25 | |
| Replacing the mmap'd data of one file with mmap'd data from a | |
| different file should work. Like test_replace_mmap_data but with | |
| table data instead of image data. | |
| """ | |
| arr_a = np.arange(10) | |
| arr_b = arr_a * 2 | |
| def test(mmap_a, mmap_b): | |
| col_a = fits.Column(name='a', format='J', array=arr_a) | |
| col_b = fits.Column(name='b', format='J', array=arr_b) | |
| hdu_a = fits.BinTableHDU.from_columns([col_a]) | |
| hdu_a.writeto(self.temp('test_a.fits'), overwrite=True) | |
| hdu_b = fits.BinTableHDU.from_columns([col_b]) | |
| hdu_b.writeto(self.temp('test_b.fits'), overwrite=True) | |
| hdul_a = fits.open(self.temp('test_a.fits'), mode='update', | |
| memmap=mmap_a) | |
| hdul_b = fits.open(self.temp('test_b.fits'), memmap=mmap_b) | |
| hdul_a[1].data = hdul_b[1].data | |
| hdul_a.close() | |
| hdul_b.close() | |
| hdul_a = fits.open(self.temp('test_a.fits')) | |
| assert 'b' in hdul_a[1].columns.names | |
| assert 'a' not in hdul_a[1].columns.names | |
| assert np.all(hdul_a[1].data['b'] == arr_b) | |
| with ignore_warnings(): | |
| > test(True, True) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:813: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_hdulist.py:803: in test | |
| hdul_a.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:898: in close | |
| hdu._close(closed=closed) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/base.py:716: in _close | |
| del self.data | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:732: in __delete__ | |
| self.fdel(obj) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.hdu.table.BinTableHDU object at 0x00000001202c91d8> | |
| def data(self): | |
| # The deleter | |
| if self._file is not None and self._data_loaded: | |
| > data_refcount = sys.getrefcount(self.data) | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/base.py:106: AttributeError | |
| _________________________________________________________________________________ TestHeaderFunctions.test_update_comment _________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_header.TestHeaderFunctions object at 0x0000000135a7cad8> | |
| def test_update_comment(self): | |
| hdul = fits.open(self.data('arange.fits')) | |
| hdul[0].header.update({'FOO': ('BAR', 'BAZ')}) | |
| assert hdul[0].header['FOO'] == 'BAR' | |
| assert hdul[0].header.comments['FOO'] == 'BAZ' | |
| with pytest.raises(ValueError): | |
| hdul[0].header.update({'FOO2': ('BAR', 'BAZ', 'EXTRA')}) | |
| hdul.writeto(self.temp('test.fits')) | |
| > hdul.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_header.py:230: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________________ TestHeaderFunctions.test_end_in_comment _________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_header.TestHeaderFunctions object at 0x0000000136571248> | |
| def test_end_in_comment(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/142 | |
| Tests a case where the comment of a card ends with END, and is followed | |
| by several blank cards. | |
| """ | |
| data = np.arange(100).reshape(10, 10) | |
| hdu = fits.PrimaryHDU(data=data) | |
| hdu.header['TESTKW'] = ('Test val', 'This is the END') | |
| # Add a couple blanks after the END string | |
| hdu.header.append() | |
| hdu.header.append() | |
| hdu.writeto(self.temp('test.fits')) | |
| with fits.open(self.temp('test.fits'), memmap=False) as hdul: | |
| # memmap = False to avoid leaving open a mmap to the file when we | |
| # access the data--this causes problems on Windows when we try to | |
| # overwrite the file later | |
| assert 'TESTKW' in hdul[0].header | |
| assert hdul[0].header == hdu.header | |
| assert (hdul[0].data == data).all() | |
| # Add blanks until the header is extended to two block sizes | |
| while len(hdu.header) < 36: | |
| hdu.header.append() | |
| with ignore_warnings(): | |
| hdu.writeto(self.temp('test.fits'), overwrite=True) | |
| with fits.open(self.temp('test.fits')) as hdul: | |
| assert 'TESTKW' in hdul[0].header | |
| assert hdul[0].header == hdu.header | |
| > assert (hdul[0].data == data).all() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_header.py:1936: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________________ TestImageFunctions.test_io_manipulation _________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x000000012326da28> | |
| @pytest.mark.xfail(platform.system() == 'Windows' and not NUMPY_LT_1_12, | |
| reason='https://github.com/astropy/astropy/issues/5797') | |
| def test_io_manipulation(self): | |
| # Get a keyword value. An extension can be referred by name or by | |
| # number. Both extension and keyword names are case insensitive. | |
| with fits.open(self.data('test0.fits')) as r: | |
| assert r['primary'].header['naxis'] == 0 | |
| assert r[0].header['naxis'] == 0 | |
| # If there are more than one extension with the same EXTNAME value, | |
| # the EXTVER can be used (as the second argument) to distinguish | |
| # the extension. | |
| assert r['sci', 1].header['detector'] == 1 | |
| # append (using "update()") a new card | |
| r[0].header['xxx'] = 1.234e56 | |
| assert ('\n'.join(str(x) for x in r[0].header.cards[-3:]) == | |
| "EXPFLAG = 'NORMAL ' / Exposure interruption indicator \n" | |
| "FILENAME= 'vtest3.fits' / File name \n" | |
| "XXX = 1.234E+56 ") | |
| # rename a keyword | |
| r[0].header.rename_keyword('filename', 'fname') | |
| pytest.raises(ValueError, r[0].header.rename_keyword, 'fname', | |
| 'history') | |
| pytest.raises(ValueError, r[0].header.rename_keyword, 'fname', | |
| 'simple') | |
| r[0].header.rename_keyword('fname', 'filename') | |
| # get a subsection of data | |
| assert np.array_equal(r[2].data[:3, :3], | |
| np.array([[349, 349, 348], | |
| [349, 349, 347], | |
| [347, 350, 349]], dtype=np.int16)) | |
| # We can create a new FITS file by opening a new file with "append" | |
| # mode. | |
| with fits.open(self.temp('test_new.fits'), mode='append') as n: | |
| # Append the primary header and the 2nd extension to the new | |
| # file. | |
| n.append(r[0]) | |
| n.append(r[2]) | |
| # The flush method will write the current HDUList object back | |
| # to the newly created file on disk. The HDUList is still open | |
| # and can be further operated. | |
| n.flush() | |
| assert n[1].data[1, 1] == 349 | |
| # modify a data point | |
| > n[1].data[1, 1] = 99 | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:252: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x00000001160cc3d8>, <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001163a4c28>], type = None, value = None, traceback = None | |
| def __exit__(self, type, value, traceback): | |
| > self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x00000001160cc3d8>, <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001163a4c28>], output_verify = 'exception', verbose = False | |
| closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| self.flush(output_verify=output_verify, verbose=verbose) | |
| finally: | |
| if self._file and closed and hasattr(self._file, 'close'): | |
| self._file.close() | |
| # Give individual HDUs an opportunity to do on-close cleanup | |
| for hdu in self: | |
| > hdu._close(closed=closed) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:898: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001163a4c28>, closed = True | |
| def _close(self, closed=True): | |
| # If the data was mmap'd, close the underlying mmap (this will | |
| # prevent any future access to the .data attribute if there are | |
| # not other references to it; if there are other references then | |
| # it is up to the user to clean those up | |
| if (closed and self._data_loaded and | |
| _get_array_mmap(self.data) is not None): | |
| > del self.data | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/base.py:716: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.utils.decorators.lazyproperty object at 0x000000011459eea0>, obj = <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001163a4c28> | |
| def __delete__(self, obj): | |
| if self.fdel: | |
| > self.fdel(obj) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:732: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.hdu.image.ImageHDU object at 0x00000001163a4c28> | |
| def data(self): | |
| # The deleter | |
| if self._file is not None and self._data_loaded: | |
| > data_refcount = sys.getrefcount(self.data) | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/base.py:106: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x000000012326da28> | |
| @pytest.mark.xfail(platform.system() == 'Windows' and not NUMPY_LT_1_12, | |
| reason='https://github.com/astropy/astropy/issues/5797') | |
| def test_io_manipulation(self): | |
| # Get a keyword value. An extension can be referred by name or by | |
| # number. Both extension and keyword names are case insensitive. | |
| with fits.open(self.data('test0.fits')) as r: | |
| assert r['primary'].header['naxis'] == 0 | |
| assert r[0].header['naxis'] == 0 | |
| # If there are more than one extension with the same EXTNAME value, | |
| # the EXTVER can be used (as the second argument) to distinguish | |
| # the extension. | |
| assert r['sci', 1].header['detector'] == 1 | |
| # append (using "update()") a new card | |
| r[0].header['xxx'] = 1.234e56 | |
| assert ('\n'.join(str(x) for x in r[0].header.cards[-3:]) == | |
| "EXPFLAG = 'NORMAL ' / Exposure interruption indicator \n" | |
| "FILENAME= 'vtest3.fits' / File name \n" | |
| "XXX = 1.234E+56 ") | |
| # rename a keyword | |
| r[0].header.rename_keyword('filename', 'fname') | |
| pytest.raises(ValueError, r[0].header.rename_keyword, 'fname', | |
| 'history') | |
| pytest.raises(ValueError, r[0].header.rename_keyword, 'fname', | |
| 'simple') | |
| r[0].header.rename_keyword('fname', 'filename') | |
| # get a subsection of data | |
| assert np.array_equal(r[2].data[:3, :3], | |
| np.array([[349, 349, 348], | |
| [349, 349, 347], | |
| [347, 350, 349]], dtype=np.int16)) | |
| # We can create a new FITS file by opening a new file with "append" | |
| # mode. | |
| with fits.open(self.temp('test_new.fits'), mode='append') as n: | |
| # Append the primary header and the 2nd extension to the new | |
| # file. | |
| n.append(r[0]) | |
| n.append(r[2]) | |
| # The flush method will write the current HDUList object back | |
| # to the newly created file on disk. The HDUList is still open | |
| # and can be further operated. | |
| n.flush() | |
| assert n[1].data[1, 1] == 349 | |
| # modify a data point | |
| n[1].data[1, 1] = 99 | |
| # When the file is closed, the most recent additions of | |
| # extension(s) since last flush() will be appended, but any HDU | |
| # already existed at the last flush will not be modified | |
| del n | |
| # If an existing file is opened with "append" mode, like the | |
| # readonly mode, the HDU's will be read into the HDUList which can | |
| # be modified in memory but can not be written back to the original | |
| # file. A file opened with append mode can only add new HDU's. | |
| os.rename(self.temp('test_new.fits'), | |
| self.temp('test_append.fits')) | |
| with fits.open(self.temp('test_append.fits'), mode='append') as a: | |
| # The above change did not take effect since this was made | |
| # after the flush(). | |
| assert a[1].data[1, 1] == 349 | |
| a.append(r[1]) | |
| del a | |
| # When changes are made to an HDUList which was opened with | |
| # "update" mode, they will be written back to the original file | |
| # when a flush/close is called. | |
| os.rename(self.temp('test_append.fits'), | |
| self.temp('test_update.fits')) | |
| with fits.open(self.temp('test_update.fits'), mode='update') as u: | |
| # When the changes do not alter the size structures of the | |
| # original (or since last flush) HDUList, the changes are | |
| # written back "in place". | |
| assert u[0].header['rootname'] == 'U2EQ0201T' | |
| u[0].header['rootname'] = 'abc' | |
| assert u[1].data[1, 1] == 349 | |
| u[1].data[1, 1] = 99 | |
| u.flush() | |
| # If the changes affect the size structure, e.g. adding or | |
| # deleting HDU(s), header was expanded or reduced beyond | |
| # existing number of blocks (2880 bytes in each block), or | |
| # change the data size, the HDUList is written to a temporary | |
| # file, the original file is deleted, and the temporary file is | |
| # renamed to the original file name and reopened in the update | |
| # mode. To a user, these two kinds of updating writeback seem | |
| # to be the same, unless the optional argument in flush or | |
| # close is set to 1. | |
| del u[2] | |
| u.flush() | |
| # the write method in HDUList class writes the current HDUList, | |
| # with all changes made up to now, to a new file. This method | |
| # works the same disregard the mode the HDUList was opened | |
| # with. | |
| u.append(r[3]) | |
| u.writeto(self.temp('test_new.fits')) | |
| > del u | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:309: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________ TestImageFunctions.test_uint_header_consistency _____________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x000000011a0711d8> | |
| def test_uint_header_consistency(self): | |
| """ | |
| Regression test for https://github.com/astropy/astropy/issues/2305 | |
| This ensures that an HDU containing unsigned integer data always has | |
| the apppriate BZERO value in its header. | |
| """ | |
| for int_size in (16, 32, 64): | |
| # Just make an array of some unsigned ints that wouldn't fit in a | |
| # signed int array of the same bit width | |
| max_uint = (2 ** int_size) - 1 | |
| if int_size == 64: | |
| max_uint = np.uint64(int_size) | |
| dtype = 'uint{}'.format(int_size) | |
| arr = np.empty(100, dtype=dtype) | |
| arr.fill(max_uint) | |
| arr -= np.arange(100, dtype=dtype) | |
| uint_hdu = fits.PrimaryHDU(data=arr) | |
| assert np.all(uint_hdu.data == arr) | |
| assert uint_hdu.data.dtype.name == 'uint{}'.format(int_size) | |
| assert 'BZERO' in uint_hdu.header | |
| assert uint_hdu.header['BZERO'] == (2 ** (int_size - 1)) | |
| filename = 'uint{}.fits'.format(int_size) | |
| uint_hdu.writeto(self.temp(filename)) | |
| with fits.open(self.temp(filename), uint=True) as hdul: | |
| new_uint_hdu = hdul[0] | |
| assert np.all(new_uint_hdu.data == arr) | |
| assert new_uint_hdu.data.dtype.name == 'uint{}'.format(int_size) | |
| assert 'BZERO' in new_uint_hdu.header | |
| > assert new_uint_hdu.header['BZERO'] == (2 ** (int_size - 1)) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:716: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| __________________________________________________________ TestImageFunctions.test_uint_header_keywords_removed_after_bitpix_change[False-False] __________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x00000001195d5088>, from_file = False, do_not_scale = False | |
| @pytest.mark.parametrize(('from_file'), (False, True)) | |
| @pytest.mark.parametrize(('do_not_scale'), (False,)) | |
| def test_uint_header_keywords_removed_after_bitpix_change(self, | |
| from_file, | |
| do_not_scale): | |
| """ | |
| Regression test for https://github.com/astropy/astropy/issues/4974 | |
| BZERO/BSCALE should be removed if data is converted to a floating | |
| point type. | |
| Currently excluding the case where do_not_scale_image_data=True | |
| because it is not clear what the expectation should be. | |
| """ | |
| arr = np.zeros(100, dtype='uint16') | |
| if from_file: | |
| # To generate the proper input file we always want to scale the | |
| # data before writing it...otherwise when we open it will be | |
| # regular (signed) int data. | |
| tmp_uint = fits.PrimaryHDU(arr) | |
| filename = 'unsigned_int.fits' | |
| tmp_uint.writeto(self.temp(filename)) | |
| with fits.open(self.temp(filename), | |
| do_not_scale_image_data=do_not_scale) as f: | |
| uint_hdu = f[0] | |
| # Force a read before we close. | |
| _ = uint_hdu.data | |
| else: | |
| uint_hdu = fits.PrimaryHDU(arr, | |
| do_not_scale_image_data=do_not_scale) | |
| # Make sure appropriate keywords are in the header. See | |
| # https://github.com/astropy/astropy/pull/3916#issuecomment-122414532 | |
| # for discussion. | |
| assert 'BSCALE' in uint_hdu.header | |
| assert 'BZERO' in uint_hdu.header | |
| assert uint_hdu.header['BSCALE'] == 1 | |
| assert uint_hdu.header['BZERO'] == 32768 | |
| # Convert data to floating point... | |
| uint_hdu.data = uint_hdu.data * 1.0 | |
| # ...bitpix should be negative. | |
| assert uint_hdu.header['BITPIX'] < 0 | |
| # BSCALE and BZERO should NOT be in header any more. | |
| assert 'BSCALE' not in uint_hdu.header | |
| assert 'BZERO' not in uint_hdu.header | |
| # This is the main test...the data values should round trip | |
| # as zero. | |
| filename = 'test_uint_to_float.fits' | |
| uint_hdu.writeto(self.temp(filename)) | |
| with fits.open(self.temp(filename)) as hdul: | |
| > assert (hdul[0].data == 0).all() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:774: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| __________________________________________________________ TestImageFunctions.test_uint_header_keywords_removed_after_bitpix_change[False-True] ___________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x0000000120bae250>, from_file = True, do_not_scale = False | |
| @pytest.mark.parametrize(('from_file'), (False, True)) | |
| @pytest.mark.parametrize(('do_not_scale'), (False,)) | |
| def test_uint_header_keywords_removed_after_bitpix_change(self, | |
| from_file, | |
| do_not_scale): | |
| """ | |
| Regression test for https://github.com/astropy/astropy/issues/4974 | |
| BZERO/BSCALE should be removed if data is converted to a floating | |
| point type. | |
| Currently excluding the case where do_not_scale_image_data=True | |
| because it is not clear what the expectation should be. | |
| """ | |
| arr = np.zeros(100, dtype='uint16') | |
| if from_file: | |
| # To generate the proper input file we always want to scale the | |
| # data before writing it...otherwise when we open it will be | |
| # regular (signed) int data. | |
| tmp_uint = fits.PrimaryHDU(arr) | |
| filename = 'unsigned_int.fits' | |
| tmp_uint.writeto(self.temp(filename)) | |
| with fits.open(self.temp(filename), | |
| do_not_scale_image_data=do_not_scale) as f: | |
| uint_hdu = f[0] | |
| # Force a read before we close. | |
| > _ = uint_hdu.data | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:746: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________________ TestImageFunctions.test_invalid_blanks __________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x0000000129a82bb8> | |
| def test_invalid_blanks(self): | |
| """ | |
| Test that invalid use of the BLANK keyword leads to an appropriate | |
| warning, and that the BLANK keyword is ignored when returning the | |
| HDU data. | |
| Regression test for https://github.com/astropy/astropy/issues/3865 | |
| """ | |
| arr = np.arange(5, dtype=np.float64) | |
| hdu = fits.PrimaryHDU(data=arr) | |
| hdu.header['BLANK'] = 2 | |
| with catch_warnings() as w: | |
| hdu.writeto(self.temp('test_new.fits')) | |
| # Allow the HDU to be written, but there should be a warning | |
| # when writing a header with BLANK when then data is not | |
| # int | |
| assert len(w) == 1 | |
| assert "Invalid 'BLANK' keyword in header" in str(w[0].message) | |
| # Should also get a warning when opening the file, and the BLANK | |
| # value should not be applied | |
| with catch_warnings() as w: | |
| with fits.open(self.temp('test_new.fits')) as h: | |
| assert len(w) == 1 | |
| assert "Invalid 'BLANK' keyword in header" in str(w[0].message) | |
| > assert np.all(arr == h[0].data) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:818: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________ TestImageFunctions.test_scale_back_with_blanks ______________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x00000001232cf280> | |
| def test_scale_back_with_blanks(self): | |
| """ | |
| Test that when auto-rescaling integer data with "blank" values (where | |
| the blanks are replaced by NaN in the float data), that the "BLANK" | |
| keyword is removed from the header. | |
| Further, test that when using the ``scale_back=True`` option the blank | |
| values are restored properly. | |
| Regression test for https://github.com/astropy/astropy/issues/3865 | |
| """ | |
| # Make the sample file | |
| arr = np.arange(5, dtype=np.int32) | |
| hdu = fits.PrimaryHDU(data=arr) | |
| hdu.scale('int16', bscale=1.23) | |
| # Creating data that uses BLANK is currently kludgy--a separate issue | |
| # TODO: Rewrite this test when scaling with blank support is better | |
| # supported | |
| # Let's just add a value to the data that should be converted to NaN | |
| # when it is read back in: | |
| hdu.data[0] = 9999 | |
| hdu.header['BLANK'] = 9999 | |
| hdu.writeto(self.temp('test.fits')) | |
| with fits.open(self.temp('test.fits')) as hdul: | |
| data = hdul[0].data | |
| assert np.isnan(data[0]) | |
| > hdul.writeto(self.temp('test2.fits')) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:850: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| __________________________________________________________________________ TestImageFunctions.test_rewriting_large_scaled_image ___________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x0000000137e98c98> | |
| def test_rewriting_large_scaled_image(self): | |
| """Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/84 and | |
| https://aeon.stsci.edu/ssb/trac/pyfits/ticket/101 | |
| """ | |
| hdul = fits.open(self.data('fixed-1890.fits')) | |
| orig_data = hdul[0].data | |
| with ignore_warnings(): | |
| hdul.writeto(self.temp('test_new.fits'), overwrite=True) | |
| > hdul.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:896: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _______________________________________________________________________________ TestImageFunctions.test_image_update_header _______________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x00000001229bf4b0> | |
| def test_image_update_header(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/105 | |
| Replacing the original header to an image HDU and saving should update | |
| the NAXISn keywords appropriately and save the image data correctly. | |
| """ | |
| # Copy the original file before saving to it | |
| self.copy_file('test0.fits') | |
| with fits.open(self.temp('test0.fits'), mode='update') as hdul: | |
| orig_data = hdul[1].data.copy() | |
| hdr_copy = hdul[1].header.copy() | |
| del hdr_copy['NAXIS*'] | |
| > hdul[1].header = hdr_copy | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:942: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________ TestImageFunctions.test_open_scaled_in_update_mode ____________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x00000001264adcc8> | |
| def test_open_scaled_in_update_mode(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/119 | |
| (Don't update scaled image data if the data is not read) | |
| This ensures that merely opening and closing a file containing scaled | |
| image data does not cause any change to the data (or the header). | |
| Changes should only occur if the data is accessed. | |
| """ | |
| # Copy the original file before making any possible changes to it | |
| self.copy_file('scale.fits') | |
| mtime = os.stat(self.temp('scale.fits')).st_mtime | |
| time.sleep(1) | |
| fits.open(self.temp('scale.fits'), mode='update').close() | |
| # Ensure that no changes were made to the file merely by immediately | |
| # opening and closing it. | |
| assert mtime == os.stat(self.temp('scale.fits')).st_mtime | |
| # Insert a slight delay to ensure the mtime does change when the file | |
| # is changed | |
| time.sleep(1) | |
| hdul = fits.open(self.temp('scale.fits'), 'update') | |
| orig_data = hdul[0].data | |
| > hdul.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:975: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________________ TestImageFunctions.test_scale_back ____________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x00000001273e6918> | |
| def test_scale_back(self): | |
| """A simple test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/120 | |
| The scale_back feature for image HDUs. | |
| """ | |
| self.copy_file('scale.fits') | |
| with fits.open(self.temp('scale.fits'), mode='update', | |
| scale_back=True) as hdul: | |
| orig_bitpix = hdul[0].header['BITPIX'] | |
| orig_bzero = hdul[0].header['BZERO'] | |
| orig_bscale = hdul[0].header['BSCALE'] | |
| orig_data = hdul[0].data.copy() | |
| > hdul[0].data[0] = 0 | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1011: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________________ TestImageFunctions.test_image_none ____________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x0000000121b29130> | |
| def test_image_none(self): | |
| """ | |
| Regression test for https://github.com/spacetelescope/PyFITS/issues/27 | |
| """ | |
| with fits.open(self.data('test0.fits')) as h: | |
| h[1].data | |
| h[1].data = None | |
| > h[1].writeto(self.temp('test.fits')) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1033: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| __________________________________________________________________________________ TestImageFunctions.test_invalid_blank __________________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x0000000119fef830> | |
| def test_invalid_blank(self): | |
| """ | |
| Regression test for https://github.com/astropy/astropy/issues/2711 | |
| If the BLANK keyword contains an invalid value it should be ignored for | |
| any calculations (though a warning should be issued). | |
| """ | |
| data = np.arange(100, dtype=np.float64) | |
| hdu = fits.PrimaryHDU(data) | |
| hdu.header['BLANK'] = 'nan' | |
| hdu.writeto(self.temp('test.fits')) | |
| with catch_warnings() as w: | |
| with fits.open(self.temp('test.fits')) as hdul: | |
| > assert np.all(hdul[0].data == data) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1056: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ___________________________________________________________________________ TestImageFunctions.test_scale_back_uint_assignment ____________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestImageFunctions object at 0x0000000112ab1130> | |
| def test_scale_back_uint_assignment(self): | |
| """ | |
| Extend fix for #4600 to assignment to data | |
| Suggested by: | |
| https://github.com/astropy/astropy/pull/4602#issuecomment-208713748 | |
| """ | |
| a = np.arange(100, 200, dtype=np.uint16) | |
| fits.PrimaryHDU(a).writeto(self.temp('test.fits')) | |
| with fits.open(self.temp('test.fits'), mode="update", | |
| scale_back=True) as (hdu,): | |
| hdu.data[:] = 0 | |
| > assert np.allclose(hdu.data, 0) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1119: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _____________________________________________________________________________________ TestCompressedImage.test_empty ______________________________________________________________________________________ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000137bab088>, <astropy.io.fits.hdu.compressed.CompImageHDU object at 0x0000000137baafa8>], output_verify = 'exception', verbose = False | |
| closed = True | |
| def close(self, output_verify='exception', verbose=False, closed=True): | |
| """ | |
| Close the associated FITS file and memmap object, if any. | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print out verbose messages. | |
| closed : bool | |
| When `True`, close the underlying file object. | |
| """ | |
| try: | |
| if (self._file and self._file.mode in ('append', 'update') | |
| and not self._file.closed): | |
| > self.flush(output_verify=output_verify, verbose=verbose) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:891: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000137bab088>, <astropy.io.fits.hdu.compressed.CompImageHDU object at 0x0000000137baafa8>], output_verify = 'exception', verbose = False | |
| > func = make_function_with_signature(func, name=name, **wrapped_args) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/utils/decorators.py:827: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| args = ([<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000137bab088>, <astropy.io.fits.hdu.compressed.CompImageHDU object at 0x0000000137baafa8>],) | |
| kwargs = {'output_verify': 'exception', 'verbose': False}, curr_thread = <_MainThread(MainThread, started 140736100262784)>, single_thread = True | |
| SigintHandler = <class 'astropy.io.fits.util.ignore_sigint.<locals>.wrapped.<locals>.SigintHandler'> | |
| sigint_handler = <astropy.io.fits.util.ignore_sigint.<locals>.wrapped.<locals>.SigintHandler object at 0x0000000137babcc8>, old_handler = <built-in function default_int_handler> | |
| @wraps(func) | |
| def wrapped(*args, **kwargs): | |
| # Get the name of the current thread and determine if this is a single | |
| # threaded application | |
| curr_thread = threading.currentThread() | |
| single_thread = (threading.activeCount() == 1 and | |
| curr_thread.getName() == 'MainThread') | |
| class SigintHandler: | |
| def __init__(self): | |
| self.sigint_received = False | |
| def __call__(self, signum, frame): | |
| warnings.warn('KeyboardInterrupt ignored until {} is ' | |
| 'complete!'.format(func.__name__), | |
| AstropyUserWarning) | |
| self.sigint_received = True | |
| sigint_handler = SigintHandler() | |
| # Define new signal interput handler | |
| if single_thread: | |
| # Install new handler | |
| old_handler = signal.signal(signal.SIGINT, sigint_handler) | |
| try: | |
| > func(*args, **kwargs) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/util.py:233: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000137bab088>, <astropy.io.fits.hdu.compressed.CompImageHDU object at 0x0000000137baafa8>], output_verify = 'exception', verbose = False | |
| @ignore_sigint | |
| def flush(self, output_verify='fix', verbose=False): | |
| """ | |
| Force a write of the `HDUList` back to the file (for append and | |
| update modes only). | |
| Parameters | |
| ---------- | |
| output_verify : str | |
| Output verification option. Must be one of ``"fix"``, | |
| ``"silentfix"``, ``"ignore"``, ``"warn"``, or | |
| ``"exception"``. May also be any combination of ``"fix"`` or | |
| ``"silentfix"`` with ``"+ignore"``, ``+warn``, or ``+exception" | |
| (e.g. ``"fix+warn"``). See :ref:`verify` for more info. | |
| verbose : bool | |
| When `True`, print verbose messages | |
| """ | |
| if self._file.mode not in ('append', 'update', 'ostream'): | |
| warnings.warn("Flush for '{}' mode is not supported." | |
| .format(self._file.mode), AstropyUserWarning) | |
| return | |
| if self._save_backup and self._file.mode in ('append', 'update'): | |
| filename = self._file.name | |
| if os.path.exists(filename): | |
| # The the file doesn't actually exist anymore for some reason | |
| # then there's no point in trying to make a backup | |
| backup = filename + '.bak' | |
| idx = 1 | |
| while os.path.exists(backup): | |
| backup = filename + '.bak.' + str(idx) | |
| idx += 1 | |
| warnings.warn('Saving a backup of {} to {}.'.format( | |
| filename, backup), AstropyUserWarning) | |
| try: | |
| shutil.copy(filename, backup) | |
| except OSError as exc: | |
| raise OSError('Failed to save backup to destination {}: ' | |
| '{}'.format(filename, exc)) | |
| self.verify(option=output_verify) | |
| if self._file.mode in ('append', 'ostream'): | |
| for hdu in self: | |
| if verbose: | |
| try: | |
| extver = str(hdu._header['extver']) | |
| except KeyError: | |
| extver = '' | |
| # only append HDU's which are "new" | |
| if hdu._new: | |
| hdu._prewriteto(checksum=hdu._output_checksum) | |
| with _free_space_check(self): | |
| hdu._writeto(self._file) | |
| if verbose: | |
| print('append HDU', hdu.name, extver) | |
| hdu._new = False | |
| hdu._postwriteto() | |
| elif self._file.mode == 'update': | |
| > self._flush_update() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:770: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000137bab088>, <astropy.io.fits.hdu.compressed.CompImageHDU object at 0x0000000137baafa8>] | |
| def _flush_update(self): | |
| """Implements flushing changes to a file in update mode.""" | |
| for hdu in self: | |
| # Need to all _prewriteto() for each HDU first to determine if | |
| # resizing will be necessary | |
| hdu._prewriteto(checksum=hdu._output_checksum, inplace=True) | |
| try: | |
| self._wasresized() | |
| # if the HDUList is resized, need to write out the entire contents of | |
| # the hdulist to the file. | |
| if self._resize or self._file.compression: | |
| > self._flush_resize() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1186: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = [<astropy.io.fits.hdu.image.PrimaryHDU object at 0x0000000137bab088>, <astropy.io.fits.hdu.compressed.CompImageHDU object at 0x0000000137baafa8>] | |
| def _flush_resize(self): | |
| """ | |
| Implements flushing changes in update mode when parts of one or more HDU | |
| need to be resized. | |
| """ | |
| old_name = self._file.name | |
| old_memmap = self._file.memmap | |
| name = _tmp_name(old_name) | |
| if not self._file.file_like: | |
| old_mode = os.stat(old_name).st_mode | |
| # The underlying file is an actual file object. The HDUList is | |
| # resized, so we need to write it to a tmp file, delete the | |
| # original file, and rename the tmp file to the original file. | |
| if self._file.compression == 'gzip': | |
| new_file = gzip.GzipFile(name, mode='ab+') | |
| elif self._file.compression == 'bzip2': | |
| new_file = bz2.BZ2File(name, mode='w') | |
| else: | |
| new_file = name | |
| with self.fromfile(new_file, mode='append') as hdulist: | |
| for hdu in self: | |
| hdu._writeto(hdulist._file, inplace=True, copy=True) | |
| if sys.platform.startswith('win'): | |
| # Collect a list of open mmaps to the data; this well be | |
| # used later. See below. | |
| mmaps = [(idx, _get_array_mmap(hdu.data), hdu.data) | |
| for idx, hdu in enumerate(self) if hdu._has_data] | |
| hdulist._file.close() | |
| > self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:1232: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>> | |
| def close(self): | |
| """ | |
| Close the 'physical' FITS file. | |
| """ | |
| if hasattr(self._file, 'close'): | |
| self._file.close() | |
| > self._maybe_close_mmap() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| During handling of the above exception, another exception occurred: | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x00000001199038a0> | |
| def test_empty(self): | |
| """ | |
| Regression test for https://github.com/astropy/astropy/issues/2595 | |
| """ | |
| hdu = fits.CompImageHDU() | |
| assert hdu.data is None | |
| hdu.writeto(self.temp('test.fits')) | |
| with fits.open(self.temp('test.fits'), mode='update') as hdul: | |
| assert len(hdul) == 2 | |
| assert isinstance(hdul[1], fits.CompImageHDU) | |
| assert hdul[1].data is None | |
| # Now test replacing the empty data with an array and see what | |
| # happens | |
| > hdul[1].data = np.arange(100, dtype=np.int32) | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1139: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________ TestCompressedImage.test_comp_image[<-data0-RICE_1-16] __________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x0000000114b0c598> | |
| data = array([[[0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0...], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.]]], dtype=float32) | |
| compression_type = 'RICE_1', quantize_level = 16, byte_order = '<' | |
| @pytest.mark.parametrize( | |
| ('data', 'compression_type', 'quantize_level'), | |
| [(np.zeros((2, 10, 10), dtype=np.float32), 'RICE_1', 16), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_1', -0.01), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_2', -0.01), | |
| (np.zeros((100, 100)) + 1, 'HCOMPRESS_1', 16), | |
| (np.zeros((10, 10)), 'PLIO_1', 16)]) | |
| @pytest.mark.parametrize('byte_order', ['<', '>']) | |
| def test_comp_image(self, data, compression_type, quantize_level, | |
| byte_order): | |
| data = data.newbyteorder(byte_order) | |
| primary_hdu = fits.PrimaryHDU() | |
| ofd = fits.HDUList(primary_hdu) | |
| chdu = fits.CompImageHDU(data, name='SCI', | |
| compression_type=compression_type, | |
| quantize_level=quantize_level) | |
| ofd.append(chdu) | |
| ofd.writeto(self.temp('test_new.fits'), overwrite=True) | |
| ofd.close() | |
| with fits.open(self.temp('test_new.fits')) as fd: | |
| assert (fd[1].data == data).all() | |
| assert fd[1].header['NAXIS'] == chdu.header['NAXIS'] | |
| assert fd[1].header['NAXIS1'] == chdu.header['NAXIS1'] | |
| assert fd[1].header['NAXIS2'] == chdu.header['NAXIS2'] | |
| > assert fd[1].header['BITPIX'] == chdu.header['BITPIX'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1170: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________ TestCompressedImage.test_comp_image[<-data1-GZIP_1--0.01] ________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x000000013991f5c8> | |
| data = array([[[0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0...], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.]]], dtype=float32) | |
| compression_type = 'GZIP_1', quantize_level = -0.01, byte_order = '<' | |
| @pytest.mark.parametrize( | |
| ('data', 'compression_type', 'quantize_level'), | |
| [(np.zeros((2, 10, 10), dtype=np.float32), 'RICE_1', 16), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_1', -0.01), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_2', -0.01), | |
| (np.zeros((100, 100)) + 1, 'HCOMPRESS_1', 16), | |
| (np.zeros((10, 10)), 'PLIO_1', 16)]) | |
| @pytest.mark.parametrize('byte_order', ['<', '>']) | |
| def test_comp_image(self, data, compression_type, quantize_level, | |
| byte_order): | |
| data = data.newbyteorder(byte_order) | |
| primary_hdu = fits.PrimaryHDU() | |
| ofd = fits.HDUList(primary_hdu) | |
| chdu = fits.CompImageHDU(data, name='SCI', | |
| compression_type=compression_type, | |
| quantize_level=quantize_level) | |
| ofd.append(chdu) | |
| ofd.writeto(self.temp('test_new.fits'), overwrite=True) | |
| ofd.close() | |
| with fits.open(self.temp('test_new.fits')) as fd: | |
| assert (fd[1].data == data).all() | |
| assert fd[1].header['NAXIS'] == chdu.header['NAXIS'] | |
| assert fd[1].header['NAXIS1'] == chdu.header['NAXIS1'] | |
| assert fd[1].header['NAXIS2'] == chdu.header['NAXIS2'] | |
| > assert fd[1].header['BITPIX'] == chdu.header['BITPIX'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1170: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________ TestCompressedImage.test_comp_image[<-data2-GZIP_2--0.01] ________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x000000011d2d5a28> | |
| data = array([[[0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0...], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.]]], dtype=float32) | |
| compression_type = 'GZIP_2', quantize_level = -0.01, byte_order = '<' | |
| @pytest.mark.parametrize( | |
| ('data', 'compression_type', 'quantize_level'), | |
| [(np.zeros((2, 10, 10), dtype=np.float32), 'RICE_1', 16), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_1', -0.01), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_2', -0.01), | |
| (np.zeros((100, 100)) + 1, 'HCOMPRESS_1', 16), | |
| (np.zeros((10, 10)), 'PLIO_1', 16)]) | |
| @pytest.mark.parametrize('byte_order', ['<', '>']) | |
| def test_comp_image(self, data, compression_type, quantize_level, | |
| byte_order): | |
| data = data.newbyteorder(byte_order) | |
| primary_hdu = fits.PrimaryHDU() | |
| ofd = fits.HDUList(primary_hdu) | |
| chdu = fits.CompImageHDU(data, name='SCI', | |
| compression_type=compression_type, | |
| quantize_level=quantize_level) | |
| ofd.append(chdu) | |
| ofd.writeto(self.temp('test_new.fits'), overwrite=True) | |
| ofd.close() | |
| with fits.open(self.temp('test_new.fits')) as fd: | |
| assert (fd[1].data == data).all() | |
| assert fd[1].header['NAXIS'] == chdu.header['NAXIS'] | |
| assert fd[1].header['NAXIS1'] == chdu.header['NAXIS1'] | |
| assert fd[1].header['NAXIS2'] == chdu.header['NAXIS2'] | |
| > assert fd[1].header['BITPIX'] == chdu.header['BITPIX'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1170: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _______________________________________________________________________ TestCompressedImage.test_comp_image[<-data3-HCOMPRESS_1-16] _______________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x00000001371d04f0> | |
| data = array([[1., 1., 1., ..., 1., 1., 1.], | |
| [1., 1., 1., ..., 1., 1., 1.], | |
| [1., 1., 1., ..., 1., 1., 1.], | |
| ..., | |
| [1., 1., 1., ..., 1., 1., 1.], | |
| [1., 1., 1., ..., 1., 1., 1.], | |
| [1., 1., 1., ..., 1., 1., 1.]]) | |
| compression_type = 'HCOMPRESS_1', quantize_level = 16, byte_order = '<' | |
| @pytest.mark.parametrize( | |
| ('data', 'compression_type', 'quantize_level'), | |
| [(np.zeros((2, 10, 10), dtype=np.float32), 'RICE_1', 16), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_1', -0.01), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_2', -0.01), | |
| (np.zeros((100, 100)) + 1, 'HCOMPRESS_1', 16), | |
| (np.zeros((10, 10)), 'PLIO_1', 16)]) | |
| @pytest.mark.parametrize('byte_order', ['<', '>']) | |
| def test_comp_image(self, data, compression_type, quantize_level, | |
| byte_order): | |
| data = data.newbyteorder(byte_order) | |
| primary_hdu = fits.PrimaryHDU() | |
| ofd = fits.HDUList(primary_hdu) | |
| chdu = fits.CompImageHDU(data, name='SCI', | |
| compression_type=compression_type, | |
| quantize_level=quantize_level) | |
| ofd.append(chdu) | |
| ofd.writeto(self.temp('test_new.fits'), overwrite=True) | |
| ofd.close() | |
| with fits.open(self.temp('test_new.fits')) as fd: | |
| assert (fd[1].data == data).all() | |
| assert fd[1].header['NAXIS'] == chdu.header['NAXIS'] | |
| assert fd[1].header['NAXIS1'] == chdu.header['NAXIS1'] | |
| assert fd[1].header['NAXIS2'] == chdu.header['NAXIS2'] | |
| > assert fd[1].header['BITPIX'] == chdu.header['BITPIX'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1170: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________ TestCompressedImage.test_comp_image[<-data4-PLIO_1-16] __________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x00000001382126b0> | |
| data = array([[0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., ...0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.]]) | |
| compression_type = 'PLIO_1', quantize_level = 16, byte_order = '<' | |
| @pytest.mark.parametrize( | |
| ('data', 'compression_type', 'quantize_level'), | |
| [(np.zeros((2, 10, 10), dtype=np.float32), 'RICE_1', 16), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_1', -0.01), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_2', -0.01), | |
| (np.zeros((100, 100)) + 1, 'HCOMPRESS_1', 16), | |
| (np.zeros((10, 10)), 'PLIO_1', 16)]) | |
| @pytest.mark.parametrize('byte_order', ['<', '>']) | |
| def test_comp_image(self, data, compression_type, quantize_level, | |
| byte_order): | |
| data = data.newbyteorder(byte_order) | |
| primary_hdu = fits.PrimaryHDU() | |
| ofd = fits.HDUList(primary_hdu) | |
| chdu = fits.CompImageHDU(data, name='SCI', | |
| compression_type=compression_type, | |
| quantize_level=quantize_level) | |
| ofd.append(chdu) | |
| ofd.writeto(self.temp('test_new.fits'), overwrite=True) | |
| ofd.close() | |
| with fits.open(self.temp('test_new.fits')) as fd: | |
| assert (fd[1].data == data).all() | |
| assert fd[1].header['NAXIS'] == chdu.header['NAXIS'] | |
| assert fd[1].header['NAXIS1'] == chdu.header['NAXIS1'] | |
| assert fd[1].header['NAXIS2'] == chdu.header['NAXIS2'] | |
| > assert fd[1].header['BITPIX'] == chdu.header['BITPIX'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1170: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________ TestCompressedImage.test_comp_image[>-data0-RICE_1-16] __________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x0000000137e0ea30> | |
| data = array([[[0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0...], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.]]], dtype=float32) | |
| compression_type = 'RICE_1', quantize_level = 16, byte_order = '>' | |
| @pytest.mark.parametrize( | |
| ('data', 'compression_type', 'quantize_level'), | |
| [(np.zeros((2, 10, 10), dtype=np.float32), 'RICE_1', 16), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_1', -0.01), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_2', -0.01), | |
| (np.zeros((100, 100)) + 1, 'HCOMPRESS_1', 16), | |
| (np.zeros((10, 10)), 'PLIO_1', 16)]) | |
| @pytest.mark.parametrize('byte_order', ['<', '>']) | |
| def test_comp_image(self, data, compression_type, quantize_level, | |
| byte_order): | |
| data = data.newbyteorder(byte_order) | |
| primary_hdu = fits.PrimaryHDU() | |
| ofd = fits.HDUList(primary_hdu) | |
| chdu = fits.CompImageHDU(data, name='SCI', | |
| compression_type=compression_type, | |
| quantize_level=quantize_level) | |
| ofd.append(chdu) | |
| ofd.writeto(self.temp('test_new.fits'), overwrite=True) | |
| ofd.close() | |
| with fits.open(self.temp('test_new.fits')) as fd: | |
| assert (fd[1].data == data).all() | |
| assert fd[1].header['NAXIS'] == chdu.header['NAXIS'] | |
| assert fd[1].header['NAXIS1'] == chdu.header['NAXIS1'] | |
| assert fd[1].header['NAXIS2'] == chdu.header['NAXIS2'] | |
| > assert fd[1].header['BITPIX'] == chdu.header['BITPIX'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1170: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________ TestCompressedImage.test_comp_image[>-data1-GZIP_1--0.01] ________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x0000000119e3c4f0> | |
| data = array([[[0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0...], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.]]], dtype=float32) | |
| compression_type = 'GZIP_1', quantize_level = -0.01, byte_order = '>' | |
| @pytest.mark.parametrize( | |
| ('data', 'compression_type', 'quantize_level'), | |
| [(np.zeros((2, 10, 10), dtype=np.float32), 'RICE_1', 16), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_1', -0.01), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_2', -0.01), | |
| (np.zeros((100, 100)) + 1, 'HCOMPRESS_1', 16), | |
| (np.zeros((10, 10)), 'PLIO_1', 16)]) | |
| @pytest.mark.parametrize('byte_order', ['<', '>']) | |
| def test_comp_image(self, data, compression_type, quantize_level, | |
| byte_order): | |
| data = data.newbyteorder(byte_order) | |
| primary_hdu = fits.PrimaryHDU() | |
| ofd = fits.HDUList(primary_hdu) | |
| chdu = fits.CompImageHDU(data, name='SCI', | |
| compression_type=compression_type, | |
| quantize_level=quantize_level) | |
| ofd.append(chdu) | |
| ofd.writeto(self.temp('test_new.fits'), overwrite=True) | |
| ofd.close() | |
| with fits.open(self.temp('test_new.fits')) as fd: | |
| assert (fd[1].data == data).all() | |
| assert fd[1].header['NAXIS'] == chdu.header['NAXIS'] | |
| assert fd[1].header['NAXIS1'] == chdu.header['NAXIS1'] | |
| assert fd[1].header['NAXIS2'] == chdu.header['NAXIS2'] | |
| > assert fd[1].header['BITPIX'] == chdu.header['BITPIX'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1170: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________ TestCompressedImage.test_comp_image[>-data2-GZIP_2--0.01] ________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x000000012747fc58> | |
| data = array([[[0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0...], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.]]], dtype=float32) | |
| compression_type = 'GZIP_2', quantize_level = -0.01, byte_order = '>' | |
| @pytest.mark.parametrize( | |
| ('data', 'compression_type', 'quantize_level'), | |
| [(np.zeros((2, 10, 10), dtype=np.float32), 'RICE_1', 16), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_1', -0.01), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_2', -0.01), | |
| (np.zeros((100, 100)) + 1, 'HCOMPRESS_1', 16), | |
| (np.zeros((10, 10)), 'PLIO_1', 16)]) | |
| @pytest.mark.parametrize('byte_order', ['<', '>']) | |
| def test_comp_image(self, data, compression_type, quantize_level, | |
| byte_order): | |
| data = data.newbyteorder(byte_order) | |
| primary_hdu = fits.PrimaryHDU() | |
| ofd = fits.HDUList(primary_hdu) | |
| chdu = fits.CompImageHDU(data, name='SCI', | |
| compression_type=compression_type, | |
| quantize_level=quantize_level) | |
| ofd.append(chdu) | |
| ofd.writeto(self.temp('test_new.fits'), overwrite=True) | |
| ofd.close() | |
| with fits.open(self.temp('test_new.fits')) as fd: | |
| assert (fd[1].data == data).all() | |
| assert fd[1].header['NAXIS'] == chdu.header['NAXIS'] | |
| assert fd[1].header['NAXIS1'] == chdu.header['NAXIS1'] | |
| assert fd[1].header['NAXIS2'] == chdu.header['NAXIS2'] | |
| > assert fd[1].header['BITPIX'] == chdu.header['BITPIX'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1170: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _______________________________________________________________________ TestCompressedImage.test_comp_image[>-data3-HCOMPRESS_1-16] _______________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x00000001384ebd00> | |
| data = array([[3.03865e-319, 3.03865e-319, 3.03865e-319, ..., 3.03865e-319, | |
| 3.03865e-319, 3.03865e-319], | |
| [3.03...03865e-319], | |
| [3.03865e-319, 3.03865e-319, 3.03865e-319, ..., 3.03865e-319, | |
| 3.03865e-319, 3.03865e-319]]) | |
| compression_type = 'HCOMPRESS_1', quantize_level = 16, byte_order = '>' | |
| @pytest.mark.parametrize( | |
| ('data', 'compression_type', 'quantize_level'), | |
| [(np.zeros((2, 10, 10), dtype=np.float32), 'RICE_1', 16), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_1', -0.01), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_2', -0.01), | |
| (np.zeros((100, 100)) + 1, 'HCOMPRESS_1', 16), | |
| (np.zeros((10, 10)), 'PLIO_1', 16)]) | |
| @pytest.mark.parametrize('byte_order', ['<', '>']) | |
| def test_comp_image(self, data, compression_type, quantize_level, | |
| byte_order): | |
| data = data.newbyteorder(byte_order) | |
| primary_hdu = fits.PrimaryHDU() | |
| ofd = fits.HDUList(primary_hdu) | |
| chdu = fits.CompImageHDU(data, name='SCI', | |
| compression_type=compression_type, | |
| quantize_level=quantize_level) | |
| ofd.append(chdu) | |
| ofd.writeto(self.temp('test_new.fits'), overwrite=True) | |
| ofd.close() | |
| with fits.open(self.temp('test_new.fits')) as fd: | |
| assert (fd[1].data == data).all() | |
| assert fd[1].header['NAXIS'] == chdu.header['NAXIS'] | |
| assert fd[1].header['NAXIS1'] == chdu.header['NAXIS1'] | |
| assert fd[1].header['NAXIS2'] == chdu.header['NAXIS2'] | |
| > assert fd[1].header['BITPIX'] == chdu.header['BITPIX'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1170: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| _________________________________________________________________________ TestCompressedImage.test_comp_image[>-data4-PLIO_1-16] __________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x0000000122c01248> | |
| data = array([[0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., ...0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.], | |
| [0., 0., 0., 0., 0., 0., 0., 0., 0., 0.]]) | |
| compression_type = 'PLIO_1', quantize_level = 16, byte_order = '>' | |
| @pytest.mark.parametrize( | |
| ('data', 'compression_type', 'quantize_level'), | |
| [(np.zeros((2, 10, 10), dtype=np.float32), 'RICE_1', 16), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_1', -0.01), | |
| (np.zeros((2, 10, 10), dtype=np.float32), 'GZIP_2', -0.01), | |
| (np.zeros((100, 100)) + 1, 'HCOMPRESS_1', 16), | |
| (np.zeros((10, 10)), 'PLIO_1', 16)]) | |
| @pytest.mark.parametrize('byte_order', ['<', '>']) | |
| def test_comp_image(self, data, compression_type, quantize_level, | |
| byte_order): | |
| data = data.newbyteorder(byte_order) | |
| primary_hdu = fits.PrimaryHDU() | |
| ofd = fits.HDUList(primary_hdu) | |
| chdu = fits.CompImageHDU(data, name='SCI', | |
| compression_type=compression_type, | |
| quantize_level=quantize_level) | |
| ofd.append(chdu) | |
| ofd.writeto(self.temp('test_new.fits'), overwrite=True) | |
| ofd.close() | |
| with fits.open(self.temp('test_new.fits')) as fd: | |
| assert (fd[1].data == data).all() | |
| assert fd[1].header['NAXIS'] == chdu.header['NAXIS'] | |
| assert fd[1].header['NAXIS1'] == chdu.header['NAXIS1'] | |
| assert fd[1].header['NAXIS2'] == chdu.header['NAXIS2'] | |
| > assert fd[1].header['BITPIX'] == chdu.header['BITPIX'] | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/tests/test_image.py:1170: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:371: in __exit__ | |
| self.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/hdu/hdulist.py:894: in close | |
| self._file.close() | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:374: in close | |
| self._maybe_close_mmap() | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <astropy.io.fits.file._File <_io.FileIO [closed]>>, refcount_delta = 0 | |
| def _maybe_close_mmap(self, refcount_delta=0): | |
| """ | |
| When mmap is in use these objects hold a reference to the mmap of the | |
| file (so there is only one, shared by all HDUs that reference this | |
| file). | |
| This will close the mmap if there are no arrays referencing it. | |
| """ | |
| if (self._mmap is not None and | |
| > sys.getrefcount(self._mmap) == 2 + refcount_delta): | |
| E AttributeError: module 'sys' has no attribute 'getrefcount' | |
| ../../../software/anaconda3/envs/iminuit-270/site-packages/astropy/io/fits/file.py:392: AttributeError | |
| ________________________________________________________________________ TestCompressedImage.test_comp_image_hcompress_image_stack ________________________________________________________________________ | |
| self = <astropy.io.fits.tests.test_image.TestCompressedImage object at 0x000000012aac0aa0> | |
| def test_comp_image_hcompress_image_stack(self): | |
| """ | |
| Regression test for https://aeon.stsci.edu/ssb/trac/pyfits/ticket/171 | |
| Tests that data containing more than two dimensions can be | |
| compressed with HCOMPRESS_1 so long as the user-supplied tile size can | |
| be flattened to two dimensions. | |
| """ | |
| cube = np.arange(300, dtype=np.float32).reshape(3, 10, 10) | |
| hdu = fits.CompImageHDU(data=cube, name='SCI', | |
| compression_type='HCOMPRESS_1', | |
| quantize_level=16, tile_size=[5, 5, 1]) | |
| hdu.writeto(self.temp('test.fits')) | |
| with fits.open(self.temp('test.fits')) as hdul: | |
| # HCOMPRESSed images are allowed to deviate from |
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