gistfile1.txt

{
 "metadata": {
  "name": ""
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "import os\n",
      "import pymatbridge as pymat\n",
      "reload(pymat)\n",
      "ip = get_ipython()\n",
      "pymat.load_ipython_extension(ip)"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "output_type": "stream",
       "stream": "stdout",
       "text": [
        "Starting MATLAB on http://localhost:53278\n",
        " visit http://localhost:53278/exit.m to shut down same\n"
       ]
      },
      {
       "output_type": "stream",
       "stream": "stdout",
       "text": [
        "."
       ]
      },
      {
       "output_type": "stream",
       "stream": "stdout",
       "text": [
        "."
       ]
      },
      {
       "output_type": "stream",
       "stream": "stdout",
       "text": [
        "MATLAB started and connected!\n"
       ]
      }
     ],
     "prompt_number": 1
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "s = \"Hello World\""
     ],
     "language": "python",
     "metadata": {},
     "outputs": [],
     "prompt_number": 2
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [
      "%%matlab -i s -o obj\n",
      "obj.s = s"
     ],
     "language": "python",
     "metadata": {},
     "outputs": [
      {
       "metadata": {},
       "output_type": "display_data",
       "text": [
        "\n",
        "obj = \n",
        "\n",
        "    s: 'Hello World'\n",
        "\n"
       ]
      },
      {
       "ename": "AttributeError",
       "evalue": "'slice' object has no attribute 'encode'",
       "output_type": "pyerr",
       "traceback": [
        "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m\n\u001b[1;31mAttributeError\u001b[0m                            Traceback (most recent call last)",
        "\u001b[1;32m<ipython-input-3-566e6e409dd3>\u001b[0m in \u001b[0;36m<module>\u001b[1;34m()\u001b[0m\n\u001b[1;32m----> 1\u001b[1;33m \u001b[0mget_ipython\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mrun_cell_magic\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;34mu'matlab'\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34mu'-i s -o obj'\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;34mu'obj.s = s'\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m",
        "\u001b[1;32m/home/cekees/proteus/linux2/lib/python2.7/site-packages/IPython/core/interactiveshell.pyc\u001b[0m in \u001b[0;36mrun_cell_magic\u001b[1;34m(self, magic_name, line, cell)\u001b[0m\n\u001b[0;32m   2141\u001b[0m             \u001b[0mmagic_arg_s\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mvar_expand\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mline\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mstack_depth\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   2142\u001b[0m             \u001b[1;32mwith\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mbuiltin_trap\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m-> 2143\u001b[1;33m                 \u001b[0mresult\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mfn\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mmagic_arg_s\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mcell\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m   2144\u001b[0m             \u001b[1;32mreturn\u001b[0m \u001b[0mresult\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m   2145\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;32m/home/cekees/proteus/linux2/lib/python2.7/site-packages/pymatbridge/matlab_magic.pyc\u001b[0m in \u001b[0;36mmatlab\u001b[1;34m(self, line, cell, local_ns)\u001b[0m\n",
        "\u001b[1;32m/home/cekees/proteus/linux2/lib/python2.7/site-packages/IPython/core/magic.pyc\u001b[0m in \u001b[0;36m<lambda>\u001b[1;34m(f, *a, **k)\u001b[0m\n\u001b[0;32m    191\u001b[0m     \u001b[1;31m# but it's overkill for just that one bit of state.\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    192\u001b[0m     \u001b[1;32mdef\u001b[0m \u001b[0mmagic_deco\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0marg\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 193\u001b[1;33m         \u001b[0mcall\u001b[0m \u001b[1;33m=\u001b[0m \u001b[1;32mlambda\u001b[0m \u001b[0mf\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m*\u001b[0m\u001b[0ma\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m**\u001b[0m\u001b[0mk\u001b[0m\u001b[1;33m:\u001b[0m \u001b[0mf\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m*\u001b[0m\u001b[0ma\u001b[0m\u001b[1;33m,\u001b[0m \u001b[1;33m**\u001b[0m\u001b[0mk\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    194\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    195\u001b[0m         \u001b[1;32mif\u001b[0m \u001b[0mcallable\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0marg\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;32m/home/cekees/proteus/linux2/lib/python2.7/site-packages/pymatbridge/matlab_magic.pyc\u001b[0m in \u001b[0;36mmatlab\u001b[1;34m(self, line, cell, local_ns)\u001b[0m\n\u001b[0;32m    267\u001b[0m                 \u001b[1;32mfor\u001b[0m \u001b[0moutput\u001b[0m \u001b[1;32min\u001b[0m \u001b[1;34m','\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mjoin\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0margs\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0moutput\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0msplit\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;34m','\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    268\u001b[0m                     self.shell.push({output:self.matlab_converter(self.Matlab,\n\u001b[1;32m--> 269\u001b[1;33m                                                               output)})\n\u001b[0m\u001b[0;32m    270\u001b[0m             \u001b[1;32melse\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    271\u001b[0m                 \u001b[1;32mraise\u001b[0m \u001b[0mRuntimeError\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mno_io_str\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;32m/home/cekees/proteus/linux2/lib/python2.7/site-packages/pymatbridge/matlab_magic.pyc\u001b[0m in \u001b[0;36mmatlab_converter\u001b[1;34m(matlab, key)\u001b[0m\n\u001b[0;32m     86\u001b[0m                     maxtime=matlab.maxtime)\n\u001b[0;32m     87\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 88\u001b[1;33m     \u001b[1;32mreturn\u001b[0m \u001b[0mloadmat\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;34m'%s/%s.mat'\u001b[0m\u001b[1;33m%\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mtempdir\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mkey\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m     89\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     90\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;32m/home/cekees/proteus/linux2/lib/python2.7/site-packages/pymatbridge/matlab_magic.pyc\u001b[0m in \u001b[0;36mloadmat\u001b[1;34m(fname)\u001b[0m\n\u001b[0;32m     67\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     68\u001b[0m     \u001b[0mf\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mh5py\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mFile\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mfname\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m---> 69\u001b[1;33m     \u001b[0mdata\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mf\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mvalues\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;36m0\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m[\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m]\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m     70\u001b[0m     \u001b[1;32mif\u001b[0m \u001b[0mlen\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mdata\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mdtype\u001b[0m\u001b[1;33m)\u001b[0m \u001b[1;33m>\u001b[0m \u001b[1;36m0\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m     71\u001b[0m         \u001b[1;31m# must be complex data\u001b[0m\u001b[1;33m\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;32m/home/cekees/proteus/linux2/lib/python2.7/site-packages/h5py/_hl/group.pyc\u001b[0m in \u001b[0;36m__getitem__\u001b[1;34m(self, name)\u001b[0m\n\u001b[0;32m    151\u001b[0m                 \u001b[1;32mraise\u001b[0m \u001b[0mValueError\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;34m\"Invalid HDF5 object reference\"\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    152\u001b[0m         \u001b[1;32melse\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 153\u001b[1;33m             \u001b[0moid\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mh5o\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mopen\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mid\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_e\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0mname\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m,\u001b[0m \u001b[0mlapl\u001b[0m\u001b[1;33m=\u001b[0m\u001b[0mself\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0m_lapl\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    154\u001b[0m \u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    155\u001b[0m         \u001b[0motype\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mh5i\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mget_type\u001b[0m\u001b[1;33m(\u001b[0m\u001b[0moid\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;32m/home/cekees/proteus/linux2/lib/python2.7/site-packages/h5py/_hl/base.pyc\u001b[0m in \u001b[0;36m_e\u001b[1;34m(self, name, lcpl)\u001b[0m\n\u001b[0;32m    111\u001b[0m         \u001b[1;32melse\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    112\u001b[0m             \u001b[1;32mtry\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[1;32m--> 113\u001b[1;33m                 \u001b[0mname\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mname\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mencode\u001b[0m\u001b[1;33m(\u001b[0m\u001b[1;34m'ascii'\u001b[0m\u001b[1;33m)\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0m\u001b[0;32m    114\u001b[0m                 \u001b[0mcoding\u001b[0m \u001b[1;33m=\u001b[0m \u001b[0mh5t\u001b[0m\u001b[1;33m.\u001b[0m\u001b[0mCSET_ASCII\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n\u001b[0;32m    115\u001b[0m             \u001b[1;32mexcept\u001b[0m \u001b[0mUnicodeEncodeError\u001b[0m\u001b[1;33m:\u001b[0m\u001b[1;33m\u001b[0m\u001b[0m\n",
        "\u001b[1;31mAttributeError\u001b[0m: 'slice' object has no attribute 'encode'"
       ]
      }
     ],
     "prompt_number": 3
    },
    {
     "cell_type": "code",
     "collapsed": false,
     "input": [],
     "language": "python",
     "metadata": {},
     "outputs": []
    }
   ],
   "metadata": {}
  }
 ]
}