Created
November 21, 2019 21:46
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Nix-shell comlete with INLA
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{ pkgs ? import <nixpkgs> {} }: | |
let | |
inlaDeps = with pkgs.rPackages; | |
[ Matrix | |
sp | |
Deriv | |
devtools | |
doParallel | |
fields | |
foreach | |
graph | |
gridExtra | |
HKprocess | |
knitr | |
markdown | |
MatrixModels | |
matrixStats | |
mvtnorm | |
numDeriv | |
orthopolynom | |
pixmap | |
rgdal | |
rgl | |
Rgraphviz | |
rmarkdown | |
sn | |
splancs | |
spdep | |
shiny | |
]; | |
#inla_bin = fetchTarball {url = "https://inla.r-inla-download.org/Linux-builds/Ubuntu-18.04.3%20LTS%20(Bionic%20Beaver)/Version_19.09.03/64bit.tgz"; sha256 = "1cnv3z5w1n0lk2gani4xwf00h2g1b9z3gxrbpn4fn671kwck48i2";}; | |
inla = pkgs.rPackages.buildRPackage { | |
name = "inla"; | |
src = pkgs.fetchurl | |
{url = "https://inla.r-inla-download.org/R/testing/src/contrib/INLA_19.07.27.tar.gz"; | |
sha256 = "451f624571f63212be4ab188a5df1573a286ab9409d86658d47b3f3d3a3dc70f";}; | |
nativeBuildInputs = inlaDeps; | |
propagatedBuildInputs = inlaDeps; | |
postInstall = '' | |
for file in $out/library/INLA/bin/linux/64bit/inla; do | |
chmod +rwx $file | |
patchelf --set-interpreter ${pkgs.stdenv.glibc}/lib/ld-linux-x86-64.so.2 $file | |
patchelf --force-rpath --set-rpath $out/library/INLA/bin/linux/64bit $file | |
done | |
for file in $out/library/INLA/bin/linux/64bit/*.so*; do | |
chmod +rwx $file | |
patchelf --force-rpath --set-rpath $out/library/INLA/bin/linux/64bit $file | |
done | |
''; | |
}; | |
in | |
with pkgs; | |
mkShell { | |
buildInputs = [ git emacs gcc pkgconfig | |
proj R gfortran gsl zlib.dev | |
suitesparse | |
] ++ | |
(with rPackages; | |
[inla | |
rmarkdown | |
tidyverse | |
rstanarm | |
brms | |
]) ; | |
} |
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