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cfljam / README.md
Created January 11, 2023 03:08
GWASPoly Vignette as Targets Workflow with Multisession Parallelization

GWASPoly Vignette as a Targets Workflow

@cfljam
cfljam / gist:5f2244331a15f578fb2f9640d0219f98
Created June 20, 2022 18:50
Slurm queue summary that is similar to the MOAB/Torque showq command
squeue -o "%.10A %.18u %.4t %.8C %.20L %.30S"
@cfljam
cfljam / .Rprofile
Last active January 10, 2023 02:48
targets workflow for GWASpoly Vignette
source("renv/activate.R")
@cfljam
cfljam / gist:168bb27defd5f05714e13542a3cd4841
Created April 29, 2021 09:32
the way to create a DVC pipeline whose outputs are excluded from the repo and cache:
dvc run -n name -d deps --always-changed -O outputs
echo '/outputs' >> .gitignore
@cfljam
cfljam / gist:b8aedc994fd0922ecf0c44e8190227be
Created July 8, 2020 19:26
unlock a drake session with default path
drake_cache('./.drake/')$unlock()
@cfljam
cfljam / index.html
Created November 26, 2019 02:17
GistR Demo
This file has been truncated, but you can view the full file.
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<title>plotly</title>
<script src="data:application/x-javascript;base64,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
@cfljam
cfljam / index.html
Created November 26, 2019 02:15
GistR Demo
This file has been truncated, but you can view the full file.
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<title>plotly</title>
<script src="data:application/x-javascript;base64,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
@cfljam
cfljam / index.html
Created October 31, 2019 18:05
GistR Demo
This file has been truncated, but you can view the full file.
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<title>plotly</title>
<script src="data:application/x-javascript;base64,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
@cfljam
cfljam / index.html
Created October 31, 2019 17:58
GistR Demo
This file has been truncated, but you can view the full file.
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<title>plotly</title>
<script src="data:application/x-javascript;base64,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
@cfljam
cfljam / index.html
Created October 31, 2019 03:42
GistR Demo
This file has been truncated, but you can view the full file.
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<title>plotly</title>
<script src="data:application/x-javascript;base64,KGZ1bmN0aW9uKCkgewogIC8vIElmIHdpbmRvdy5IVE1MV2lkZ2V0cyBpcyBhbHJlYWR5IGRlZmluZWQsIHRoZW4gdXNlIGl0OyBvdGhlcndpc2UgY3JlYXRlIGEKICAvLyBuZXcgb2JqZWN0LiBUaGlzIGFsbG93cyBwcmVjZWRpbmcgY29kZSB0byBzZXQgb3B0aW9ucyB0aGF0IGFmZmVjdCB0aGUKICAvLyBpbml0aWFsaXphdGlvbiBwcm9jZXNzICh0aG91Z2ggbm9uZSBjdXJyZW50bHkgZXhpc3QpLgogIHdpbmRvdy5IVE1MV2lkZ2V0cyA9IHdpbmRvdy5IVE1MV2lkZ2V0cyB8fCB7fTsKCiAgLy8gU2VlIGlmIHdlJ3JlIHJ1bm5pbmcgaW4gYSB2aWV3ZXIgcGFuZS4gSWYgbm90LCB3ZSdyZSBpbiBhIHdlYiBicm93c2VyLgogIHZhciB2aWV3ZXJNb2RlID0gd2luZG93LkhUTUxXaWRnZXRzLnZpZXdlck1vZGUgPQogICAgICAvXGJ2aWV3ZXJfcGFuZT0xXGIvLnRlc3Qod2luZG93LmxvY2F0aW9uKTsKCiAgLy8gU2VlIGlmIHdlJ3JlIHJ1bm5pbmcgaW4gU2hpbnkgbW9kZS4gSWYgbm90LCBpdCdzIGEgc3RhdGljIGRvY3VtZW50LgogIC8vIE5vdGUgdGhhdCBzdGF0aWMgd2lkZ2V0cyBjYW4gYXBwZWFyIGluIGJvdGggU2hpbnkgYW5kIHN0YXRpYyBtb2RlcywgYnV0CiAgLy8gb2J2aW91c2x5LCBTaGlueSB3aWRnZXRzIGNhbiBvbmx5IGFwcGVhciBpbiBTaGlueSBhcHBzL2RvY3VtZW50c