gistfile1.txt

#!/bin/bash

export HOME=$PWD

wget -q –retry-connrefused –waitretry=10 https://repo.continuum.io/archive/Anaconda2-4.3.1-Linux-x86_64.sh #here I get the anaconda file from squid
chmod 777 * #wget does strange things
./Anaconda2-4.3.1-Linux-x86_64.sh -b -p ./anaconda > /dev/null #install anaconda, I also add an argument to the directory name
export PATH=$PWD/anaconda/bin:$PATH
echo 'Done installing anaconda'
chmod 777 *

#keras stuff
conda install --yes pyyaml > /dev/null
conda install --yes HDF5 > /dev/null
conda install --yes h5py > /dev/null
conda install --yes -c rdonnelly libgpuarray > /dev/null
conda install --yes -c rdonnelly pygpu > /dev/null
conda install --yes -c conda-forge theano=0.8* > /dev/null
conda install --yes -c conda-forge keras=1.2* > /dev/null
conda install --yes scikit-learn=0.19* > /dev/null
conda install --yes -c rdkit rdkit-postgresql > /dev/null
conda install --yes -c r rpy2 > /dev/null
conda install --yes -c auto croc > /dev/null
echo 'Done installing libraries'
chmod 777 -R ./anaconda