| Topic: | Lorena Pantano: BIG meeting -- small RNA analysis (http://openwetware.org/wiki/BioMicroCenter:BIG_meeting) |
| Video: | https://youtu.be/l5nI8GICCPg |
| Slides: | https://github.com/lpantano/mypubs/blob/master/talks/BIG_Dec_15_2016.pdf |
| Time: | Dec 15, 2016 11:00 AM (GMT-5:00) Eastern Time (US and Canada) |
| Location: | MIT Koch Biology Building 68-156 (http://whereis.mit.edu/?go=68) or online |
| Online: | https://zoom.us/j/516853567 |
| Telephone: | Dial: +1 646 558 8656 (US Toll) or +1 408 638 0968 (US Toll) International numbers available: https://zoom.us/zoomconference?m=yW4EVPMn0eK1ALOu2VlHPdzB4O3DS4Tp |
| Meeting ID: | 516 853 567 |
I will talk about miRNA and isomiR sequencing protocols and annotation, benchmarking of tools, presentation of an standard naming rules for isomiRs, and common downstream analyses in R. Majority of the work is based in this post I keep up-to-date https://github.com/lpantano/mypubs/blob/master/mirna/mirannotation/stats.md, this package http://bioconductor.org/packages/3.5/bioc/vignettes/isomiRs/inst/doc/isomiRs-intro.pdf, this community project http://mirtop.github.io, and this publication https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4686641/.