Created
November 15, 2015 11:29
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Omixon test HLA calls (http://www.omixon.com/hla-typing-example-data/) with hg38 and OptiType (https://github.com/FRED-2/OptiType)
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| sample | locus | alleles | expected | validates | |
|---|---|---|---|---|---|
| NA12878 | A | HLA-A*01:01;HLA-A*11:01 | HLA-A*01:01;HLA-A*11:01 | yes | |
| NA12878 | B | HLA-B*56:01;HLA-B*08:01 | HLA-B*08:01;HLA-B*56:01 | yes | |
| NA12878 | C | HLA-C*07:01;HLA-C*01:02 | HLA-C*01:02;HLA-C*07:01 | yes | |
| NA12891 | A | HLA-A*24:02;HLA-A*01:01 | HLA-A*01:01;HLA-A*24:02 | yes | |
| NA12891 | B | HLA-B*08:01;HLA-B*07:02 | HLA-B*07:02;HLA-B*08:01 | yes | |
| NA12891 | C | HLA-C*07:01;HLA-C*07:02 | HLA-C*07:01;HLA-C*07:02 | yes | |
| NA18526 | A | HLA-A*24:02;HLA-A*33:03 | HLA-A*24:02;HLA-A*33:03 | yes | |
| NA18526 | B | HLA-B*40:01;HLA-B*58:01 | HLA-B*40:01;HLA-B*58:01;HLA-B*58:02 | no | |
| NA18526 | C | HLA-C*03:02;HLA-C*07:02 | HLA-C*03:02;HLA-C*07:02 | yes | |
| NA18912 | A | HLA-A*74:01;HLA-A*34:02 | HLA-A*34:02;HLA-A*74:01 | yes | |
| NA18912 | B | HLA-B*53:01;HLA-B*53:01 | HLA-B*53:01;HLA-B*53:01 | yes | |
| NA18912 | C | HLA-C*04:01;HLA-C*04:01 | HLA-C*04:01;HLA-C*04:01 | yes | |
| NA18964 | A | HLA-A*26:06;HLA-A*26:01 | HLA-A*26:01;HLA-A*26:03 | no | |
| NA18964 | B | HLA-B*35:01;HLA-B*40:02 | HLA-B*35:01;HLA-B*40:02 | yes | |
| NA18964 | C | HLA-C*03:42;HLA-C*03:03 | HLA-C*03:03;HLA-C*03:04 | no | |
| NA19000 | A | HLA-A*24:02;HLA-A*24:02 | HLA-A*24:02;HLA-A*24:02 | yes | |
| NA19000 | B | HLA-B*67:01;HLA-B*54:01 | HLA-B*54:01;HLA-B*67:01 | yes | |
| NA19000 | C | HLA-C*01:02;HLA-C*07:02 | HLA-C*01:02;HLA-C*07:02 | yes | |
| NA19130 | A | HLA-A*33:03;HLA-A*36:01 | HLA-A*33:03;HLA-A*36:01 | yes | |
| NA19130 | B | HLA-B*13:02;HLA-B*35:01 | HLA-B*13:02;HLA-B*35:01 | yes | |
| NA19130 | C | HLA-C*06:08;HLA-C*04:01 | HLA-C*04:01;HLA-C*04:01 | yes | |
| NA19172 | A | HLA-A*30:02;HLA-A*68:01 | HLA-A*30:02;HLA-A*68:01 | yes | |
| NA19172 | B | HLA-B*44:03;HLA-B*35:01 | HLA-B*35:01;HLA-B*44:03 | yes | |
| NA19172 | C | HLA-C*04:01;HLA-C*04:01 | HLA-C*04:01;HLA-C*04:01 | yes | |
| sample_1 | A | HLA-A*02:01;HLA-A*26:01 | HLA-A*02:01;HLA-A*26:01 | yes | |
| sample_1 | B | HLA-B*38:01;HLA-B*41:01 | HLA-B*38:01:01;HLA-B*41:01 | yes | |
| sample_1 | C | HLA-C*17:01;HLA-C*12:03 | HLA-C*12:03;HLA-C*17:01 | yes | |
| sample_2 | A | HLA-A*26:01;HLA-A*03:01 | HLA-A*03:01:01;HLA-A*26:01:01 | yes | |
| sample_2 | B | HLA-B*38:01;HLA-B*07:02 | HLA-B*07:02;HLA-B*38:01 | yes | |
| sample_2 | C | HLA-C*07:02;HLA-C*12:03 | HLA-C*07:02;HLA-C*12:03 | yes | |
| sample_3 | A | HLA-A*68:01;HLA-A*01:01 | HLA-A*01:01;HLA-A*68:01 | yes | |
| sample_3 | B | HLA-B*08:01;HLA-B*44:03 | HLA-B*08:01:01;HLA-B*44:03 | yes | |
| sample_3 | C | HLA-C*07:01;HLA-C*04:01 | HLA-C*04:01;HLA-C*07:01 | yes | |
| sample_4 | A | HLA-A*02:01;HLA-A*32:01 | HLA-A*02:01;HLA-A*32:01:01 | yes | |
| sample_4 | B | HLA-B*40:01;HLA-B*51:01 | HLA-B*40:01;HLA-B*51:01 | yes | |
| sample_4 | C | HLA-C*14:02;HLA-C*03:04 | HLA-C*03:04:01;HLA-C*14:02:01 | yes | |
| sample_5 | A | HLA-A*02:01;HLA-A*01:01 | HLA-A*01:01;HLA-A*02:01 | yes | |
| sample_5 | B | HLA-B*40:01;HLA-B*38:01 | HLA-B*38:01;HLA-B*40:01 | yes | |
| sample_5 | C | HLA-C*17:01;HLA-C*12:03 | HLA-C*12:03;HLA-C*17:01 | yes | |
| sample_6 | A | HLA-A*02:05;HLA-A*26:01 | HLA-A*02:05:01;HLA-A*26:01 | yes | |
| sample_6 | B | HLA-B*35:01;HLA-B*50:01 | HLA-B*35:01;HLA-B*50:01:01 | yes | |
| sample_6 | C | HLA-C*04:01;HLA-C*06:02 | HLA-C*04:01;HLA-C*06:02 | yes | |
| sample_7 | A | HLA-A*68:01;HLA-A*29:02 | HLA-A*29:02:01;HLA-A*68:01:01 | yes | |
| sample_7 | B | HLA-B*40:01;HLA-B*44:02 | HLA-B*40:01;HLA-B*44:02:01:01 | yes | |
| sample_7 | C | HLA-C*16:01;HLA-C*03:04 | HLA-C*03:04:01;HLA-C*16:01:01 | yes | |
| sample_8 | A | HLA-A*02:01;HLA-A*01:01 | HLA-A*01:01;HLA-A*02:01 | yes | |
| sample_8 | B | HLA-B*08:01;HLA-B*51:01 | HLA-B*08:01:01;HLA-B*51:01:01 | yes | |
| sample_8 | C | HLA-C*07:01;HLA-C*15:02 | HLA-C*07:01;HLA-C*15:02 | yes |
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