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charles-plessy/gist:bce102bc828a181420260f47db637161

Last active March 31, 2020 07:22
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Nanopore command-line notes
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gistfile1.txt
cutadapt -g ^GACTCATCCCATTTTTGAGTCCGATTTCGATTGTCTAACAG -o ${SAMPLE}_SL_R1.fq -p ${SAMPLE}_SL_R2.fq --untrimmed-output ${SAMPLE}_noSL_R1.fq --untrimmed-paired-output ${SAMPLE}_noSL_R2.fq ${SAMPLE}_BC_ATCATA_READ1.fq ${SAMPLE}_BC_ATCATA_READ2.fq
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