Comparing simple test

pims_pip_output

(testenv) root@ae3529a7c667:/# python pimstest.py
(testenv) root@ae3529a7c667:/#

pims_pip_setup

# This installs pims via pip
wget http://repo.continuum.io/miniconda/Miniconda-3.5.5-Linux-x86_64.sh -O miniconda.sh;
chmod +x miniconda.sh
./miniconda.sh -b -p /home/travis/mc
export PATH=/home/travis/mc/bin:$PATH
conda update --yes conda
DEPS="pip numpy slicerator scipy pillow matplotlib scikit-image jinja2 av tifffile libtiff jpype1 ipython sphinx sphinx_rtd_theme numpydoc"
conda update --yes conda
conda config --append channels conda-forge
export TRAVIS_PYTHON_VERSION="3.6"
conda create -n testenv --yes $DEPS nose python=$TRAVIS_PYTHON_VERSION
source activate testenv
git clone https://github.com/soft-matter/trackpy-examples.git
pip install pims
python pimstest.py

pims_source_output

(testenv) root@6c1f22544037:/# python pimstest.py
Exception ignored in: <object repr() failed>
Traceback (most recent call last):
  File "/home/travis/mc/envs/testenv/lib/python3.6/site-packages/PIMS-0.4+30.g9cb60ce-py3.6.egg/pims/image_sequence.py", line 106, in __del__
    self.close()
  File "/home/travis/mc/envs/testenv/lib/python3.6/site-packages/PIMS-0.4+30.g9cb60ce-py3.6.egg/pims/image_sequence.py", line 101, in close
    if self._is_zipfile:
AttributeError: 'ImageSequence' object has no attribute '_is_zipfile'
Traceback (most recent call last):
  File "pimstest.py", line 2, in <module>
    frames = pims.ImageSequence('/trackpy-examples/sample_data/bulk_water/*.png', as_grey=True)
TypeError: __init__() got an unexpected keyword argument 'as_grey'

pims_source_setup

# This installs pims directly from source
wget http://repo.continuum.io/miniconda/Miniconda-3.5.5-Linux-x86_64.sh -O miniconda.sh;
chmod +x miniconda.sh
./miniconda.sh -b -p /home/travis/mc
export PATH=/home/travis/mc/bin:$PATH
conda update --yes conda
DEPS="numpy slicerator scipy pillow matplotlib scikit-image jinja2 av tifffile libtiff jpype1 ipython sphinx sphinx_rtd_theme numpydoc" DEPSPIP="moviepy imageio"
conda update --yes conda
conda config --append channels conda-forge
export TRAVIS_PYTHON_VERSION="3.6"
conda create -n testenv --yes $DEPS nose python=$TRAVIS_PYTHON_VERSION
source activate testenv
git clone https://github.com/soft-matter/trackpy-examples.git
git clone https://github.com/soft-matter/pims.git
cd pims
python setup.py install
cd ../
python pimstest.py

pimstest.py

import pims
frames = pims.ImageSequence('/trackpy-examples/sample_data/bulk_water/*.png', as_grey=True)