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May 19, 2022 15:33
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Why can't knit_child() have parameters?!
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--- | |
title: "Report on animals" | |
output: html_document | |
date: '2022-05-19' | |
--- | |
```{r setup, include=FALSE} | |
knitr::opts_chunk$set( | |
echo = FALSE, | |
message = FALSE, | |
warning = FALSE | |
) | |
library(tidyverse) | |
``` | |
# Introduction | |
This report is designed to show how to include programmatically insert multiple sections that are generated from grouping variables in a dataset. | |
# Summarising by diet | |
Let's summarise each of the diet types in turn. | |
```{r results='asis', warning=FALSE, message=FALSE} | |
msleep %>% | |
pull(vore) %>% | |
unique() %>% | |
map(~knitr::knit_expand("vore-section.Rmd", | |
vore_type = .x)) %>% | |
unlist() %>% | |
knitr::knit_child(text = ., quiet = TRUE) %>% | |
unlist() %>% | |
cat(., sep = '\n') | |
``` | |
# Summarising by conservation status | |
I haven't written this yet. |
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```{r} | |
vore_type_chr <- as.character(glue::glue("{{vore_type}}")) | |
``` | |
## Animals in the `r vore_type_chr` category | |
### Conservation status | |
In this section we look into the conservation of animals with a `r vore_type_chr` diet. | |
```{r} | |
vore_conservation <- function(vore_type_chr) { | |
msleep %>% | |
filter(vore == vore_type_chr) %>% | |
count(conservation, sort = TRUE) %>% | |
knitr::kable() | |
} | |
``` | |
```{r} | |
vore_conservation(vore_type_chr) | |
``` | |
### Sleep characteristics | |
Sleep characteristics | |
```{r} | |
msleep %>% | |
filter(vore == "carni") %>% | |
ggplot(aes(x = sleep_total, | |
y = sleep_rem)) + | |
geom_point() | |
``` | |
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