Genome browser for phamerator.org
forked from scresawn's block: genome browser
Genome browser for phamerator.org
forked from scresawn's block: genome browser
<!DOCTYPE html> | |
<head> | |
<meta charset="utf-8"> | |
<script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js"></script> | |
</head> | |
<body> | |
<script> | |
// Feel free to change or delete any of the code you see! | |
var genomelength = 7800; | |
var tickMarks = {thousand: [], fivehundred: [], onehundred: []}; | |
var genome_positions = []; | |
for (var i = 1; i <= genomelength; i++) { | |
genome_positions.push(i); | |
} | |
genome_positions.forEach(function(currentValue, index, myArray){ | |
if (currentValue % 1000 === 0) { | |
tickMarks.thousand.push(currentValue); | |
} | |
else if (currentValue % 500 === 0) { | |
tickMarks.fivehundred.push(currentValue); | |
} | |
else if (currentValue % 100 === 0) { | |
tickMarks.onehundred.push(currentValue); | |
} | |
}); | |
var svg = d3.select("body").append("svg").attr({width:genomelength}); | |
svg.append("rect") | |
.attr({x: 0, y: 10, width: (genomelength) / 10, height: 30}) | |
.style({"stroke-width": "2px", "fill": "white", "stroke": "black"}); | |
//.style({ fill: "#a72d1a"}) | |
//.transition().duration(3000).ease("bounce") | |
//.style({ fill: "#5db9e3"}) | |
console.log(tickMarks); | |
var group = svg.selectAll(".a") | |
.data(tickMarks.thousand) | |
.enter() | |
.append("g"); | |
group.append("rect") | |
.style({"fill": "black"}) | |
.attr({x: 0, y: 10, width: "1px", height: 30}) | |
.transition().duration(3000) | |
.attr("transform", function (d) { return "translate(" + d/10 + ",0)"; }); | |
var group2 = svg.selectAll(".b") | |
.data(tickMarks.fivehundred) | |
.enter() | |
.append("g"); | |
group2.append("rect") | |
.style({"fill": "black"}) | |
.attr({x: 0, y: 10, width: "1px", height: 16}) | |
.transition().duration(2000) | |
.attr("transform", function (d) { return "translate(" + d/10 + ",0)"; }); | |
var group3 = svg.selectAll(".c") | |
.data(tickMarks.onehundred) | |
.enter() | |
.append("g"); | |
group3.append("rect") | |
.style({"fill": "black"}) | |
.attr({x: 0, y: 24, width: "1px", height: 16}) | |
.transition().duration(1000) | |
.attr("transform", function (d) { return "translate(" + d/10 + ",0)"; }); | |
</script> | |
</body> |