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# Stolen from here: http://www.pement.org/sed/sed1line.txt

-------------------------------------------------------------------------
USEFUL ONE-LINE SCRIPTS FOR SED (Unix stream editor)        Dec. 29, 2005
Compiled by Eric Pement - pemente[at]northpark[dot]edu        version 5.5

Latest version of this file (in English) is usually at:
   http://sed.sourceforge.net/sed1line.txt
   http://www.pement.org/sed/sed1line.txt

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# Claas Heuer, November 2015

# install the package
install.packages("INLA", repos="http://www.math.ntnu.no/inla/R/stable")

# run a test on BGLR data
library(INLA)
library(BGLR)
data(wheat)

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# Claas Heuer, November 2015
#
# Setup Powerline on Debian and Centos for BASH, VIM and TMUX
# source: https://fedoramagazine.org/add-power-terminal-powerline/


# install on debian
sudo apt-get install python-pip
sudo apt-get install powerline

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[//]: # (Claas Heuer, November 2015)
[//]: # (Run pandoc like this)
[//]: # (pandoc --filter pandoc-crossref -s -S --bibliography references.bib paper_skeleton.txt -o test.docx)
[//]: # (pandoc --filter pandoc-crossref -s -S --bibliography references.bib paper_skeleton.txt -o test.pdf)


# First Section {#sec:first_section}

This is the first section and we are writing an equation that we want to reference to later in
the document:

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#!/bin/bash
# Claas Heuer, October 2015
# 
# requires 'littler' - sudo apt-get install littler

function fw_to_csv {

# first argument is lines to skip if there is some meta data before the actual header
  local skip_lines=$1
  local this_file=$2

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# Claas Heuer, October 2015

insert_sql <- function(conn, # the RJDBC connection
                       table, # the table in the database
                       dat, # an R dataframe
                       cols = NULL, # which columns to insert (non selected will be filled with NULL)
                       start_row = NULL, # from which row in 'dat' to start
                       end_row = NULL,  # at which row in 'dat' to stop
                       verbose = TRUE) # print progress to the screen

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# Claas Heuer, October 2015
#
# first get ffmpeg (http://superuser.com/a/865744)
sudo echo deb http://www.deb-multimedia.org stable main non-free  >> /etc/apt/sources.list
sudo apt-get update
sudo apt-get install deb-multimedia-keyring
sudo apt-get update
sudo apt-get install ffmpeg

# go to video directory and extract images (http://unix.stackexchange.com/a/185879)

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# Claas Heuer, Oxtober 2015
#
# Helpful:
# https://docs.docker.com/installation/debian/
# https://hub.docker.com/u/rocker/
# https://hub.docker.com/_/debian/
# https://zeltser.com/docker-application-distribution/
# https://hub.docker.com/
# First install Docker: http://docs.docker.com/linux/step_one/

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# Taken from here: http://stackoverflow.com/a/28044986/2748031

#!/bin/bash
# 1. Create ProgressBar function
# 1.1 Input is currentState($1) and totalState($2)
function ProgressBar {
# Process data
    let _progress=(${1}*100/${2}*100)/100
    let _done=(${_progress}*4)/10
    let _left=40-$_done

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# Claas Heuer, October 2015
#
# Maximum A Posteriori Estimation 
#
# Estimate mean and variance of normal iid variables
# with a normal prior on the mean

# the likelihood function = L(y;.) = y ~ N(mu, sigma) * mu ~ N(0,16)
lik <- function(par, y) {