Created
January 27, 2021 16:59
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## New employee setup | |
### Tasks | |
- **Join the mgibio Slack**. Ask any user to invite you using your wustl address, or email [c.a.miller@wustl.edu](mailto:c.a.miller@wustl.edu). Excellent place to post questions about anything and get answers. Useful channels include #bfx-workshop, #analysis-workflows, #cancergenomics, and #docker | |
- **Get compute1 access set up**. This requires a ticket to the [RIS Servicedesk](https://jira.ris.wustl.edu/servicedesk/customer/portal/1) requesting to be added to the appropriate compute and storage groups | |
- **VPN access** Connect to msvpn.wusm.wustl.edu through Cisco AnyConnect. Use WUSTL key log in and submit request at [https://it.wustl.edu/items/connect/](https://it.wustl.edu/items/connect/) | |
- **Set up compute1 config files** (_Need a link for this - env variables, etc_) | |
- **Sign up for the bfx_workshop** get on the [email list](https://outlook.office365.com/owa/bioinformatics@gowustl.onmicrosoft.com/groupsubscription.ashx?action=join&source=MSExchange/LokiServer&guid=2fdc302a-812b-4984-a57b-62ee21430272) and check out [past lectures and tutorials on github](https://github.com/genome/bfx-workshop/b). First session of the month is "office hours" where you can get expert answers to generic bioinformatics questions. | |
### Resources: | |
- [Bioinformatics Workshop Intro](https://github.com/genome/bfx-workshop/blob/master/lectures/week\_01/bfx\_workshop\_01\_overview.ipynb) - reference for a lot of general compute/docker stuff and links | |
- [RIS Guide to the compute1 cluster](https://docs.ris.wustl.edu/doc/compute/02\_compute.html) | |
- [Tutorial on submitting jobs on the cluster](https://gist.github.com/chrisamiller/4b17a8dd310374f078da2bf12b3e2a49) | |
- [Analysis workflows](https://github.com/genome/analysis-workflows) CWL definitions for core genomics pipelines - Shared resource |
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