aggregate-dupes

db.collection.aggregate([
  { $group: { 
    _id: { firstField: "$firstField", secondField: "$secondField" }, 
    uniqueIds: { $addToSet: "$_id" },
    count: { $sum: 1 } 
  }}, 
  { $match: { 
    count: { $gt: 1 } 
  }},
  { $group: {
    _id: null,
    total_dups: {$sum: "$count"}
  }}
])