gistfile1.txt

filo@filo-dtc:~/workspace/nipype-git/examples$ ipython spm_tutorial2.py 
4.1.5
/usr/lib/pymodules/python2.6/foolscap/banana.py:2: DeprecationWarning: the sets module is deprecated
  import struct, sets, time
INFO:workflow:in: ('func', 'preproc.realign.infile')
INFO:workflow:in: ('struct', 'preproc.coregister.target')
INFO:workflow:in: ('struct', 'preproc.normalize.source')
INFO:workflow:in: ('subject_id', 'analysis.modelspec.subject_id')
INFO:workflow:in: (('subject_id', <function subjectinfo at 0x1f320c8>), 'analysis.modelspec.subject_info')
INFO:workflow:out: ('analysis.contrastestimate.con_images', 'contrasts.@con')
INFO:workflow:out: ('analysis.contrastestimate.spmT_images', 'contrasts.@T')
INFO:workflow:out: ('realign.realignment_parameters', 'modelspec.realignment_parameters')
INFO:workflow:out: ('smooth.smoothed_files', 'modelspec.functional_runs')
INFO:workflow:out: ('art.outlier_files', 'modelspec.outlier_files')
INFO:workflow:out: ('skullstrip.maskfile', 'level1design.mask_image')
INFO:workflow:in: ('realign.realignment_parameters', 'modelspec.realignment_parameters')
INFO:workflow:in: ('smooth.smoothed_files', 'modelspec.functional_runs')
INFO:workflow:in: ('art.outlier_files', 'modelspec.outlier_files')
INFO:workflow:in: ('skullstrip.maskfile', 'level1design.mask_image')
INFO:workflow:in: ('realignment_parameters', 'modelspec.realignment_parameters')
INFO:workflow:in: ('maskfile', 'level1design.mask_image')
INFO:workflow:in: ('outlier_files', 'modelspec.outlier_files')
INFO:workflow:in: ('smoothed_files', 'modelspec.functional_runs')
INFO:workflow:PE: expanding iterables
INFO:workflow:PE: expanding iterables ... done
INFO:workflow:Running in parallel.
INFO:workflow:Submitting 2 jobs
INFO:workflow:Executing: infosourceI0 ID: 19 H:9ac68f62748a552dd2296a37856721a6
INFO:workflow:Executing: infosourceI1 ID: 23 H:3918cfcfa85e326112b925934bd0d1c2
INFO:workflow:[Job finished] jobname: infosourceI0 jobid: 19
Subject ID: s1

INFO:workflow:[Job finished] jobname: infosourceI1 jobid: 23
Subject ID: s3

INFO:workflow:Submitting 2 jobs
INFO:workflow:Executing: datasource1 ID: 7 H:155a56c953580e24a8a569acbca46b42
INFO:workflow:Executing: datasource0 ID: 21 H:0fb60766e48a66f39b26e81d2d82dcc7
INFO:workflow:[Job finished] jobname: datasource1 jobid: 7
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)

/home/filo/workspace/nipype-git/examples/spm_tutorial2.py in <module>()
    419 
    420 if __name__ == '__main__':
--> 421     level1.run()
    422     l2pipeline.run()
    423 

/home/filo/workspace/nipype/nipype/pipeline/engine.pyc in run(self)
    601         self._create_flat_graph()
    602         self._generate_expanded_graph()
--> 603         self._execute_with_manager()
    604 
    605     def _set_node_input(self, node, param, source, sourceinfo):

/home/filo/workspace/nipype/nipype/pipeline/engine.pyc in _execute_with_manager(self)
    868                             notrun.append(self._remove_node_deps(jobid, crashfile))
    869                     else:
--> 870                         self._task_finished_cb(res['result'], jobid)
    871                 else:
    872                     toappend.insert(0, (taskid, jobid))

/home/filo/workspace/nipype/nipype/pipeline/engine.pyc in _task_finished_cb(self, result, jobid)
    917         # Update job and worker queues
    918         self.proc_pending[jobid] = False
--> 919         self.procs[jobid]._result = deepcopy(result)
    920         # Update the inputs of all tasks that depend on this job's outputs
    921         graph = self._execgraph

/usr/lib/python2.6/copy.pyc in deepcopy(x, memo, _nil)
    187                             raise Error(
    188                                 "un(deep)copyable object of type %s" % cls)
--> 189                 y = _reconstruct(x, rv, 1, memo)
    190 
    191     memo[d] = y

/usr/lib/python2.6/copy.pyc in _reconstruct(x, info, deep, memo)
    336     if state:
    337         if deep:
--> 338             state = deepcopy(state, memo)
    339         if hasattr(y, '__setstate__'):
    340             y.__setstate__(state)

/usr/lib/python2.6/copy.pyc in deepcopy(x, memo, _nil)
    160     copier = _deepcopy_dispatch.get(cls)
    161     if copier:
--> 162         y = copier(x, memo)
    163     else:
    164         try:

/usr/lib/python2.6/copy.pyc in _deepcopy_dict(x, memo)
    253     memo[id(x)] = y
    254     for key, value in x.iteritems():
--> 255         y[deepcopy(key, memo)] = deepcopy(value, memo)
    256     return y
    257 d[dict] = _deepcopy_dict

/usr/lib/python2.6/copy.pyc in deepcopy(x, memo, _nil)
    171             copier = getattr(x, "__deepcopy__", None)
    172             if copier:
--> 173                 y = copier(memo)
    174             else:
    175                 reductor = dispatch_table.get(cls)

/home/filo/workspace/nipype/nipype/interfaces/base.pyc in __deepcopy__(self, memo)
    957         if id_self in memo:
    958             return memo[id_self]
--> 959         dup_dict = deepcopy(self.get(), memo)
    960         # access all keys
    961         for key in self.copyable_trait_names():

/usr/lib/python2.6/copy.pyc in deepcopy(x, memo, _nil)
    160     copier = _deepcopy_dispatch.get(cls)
    161     if copier:
--> 162         y = copier(x, memo)
    163     else:
    164         try:

/usr/lib/python2.6/copy.pyc in _deepcopy_dict(x, memo)
    253     memo[id(x)] = y
    254     for key, value in x.iteritems():
--> 255         y[deepcopy(key, memo)] = deepcopy(value, memo)
    256     return y
    257 d[dict] = _deepcopy_dict

/usr/lib/python2.6/copy.pyc in deepcopy(x, memo, _nil)
    171             copier = getattr(x, "__deepcopy__", None)
    172             if copier:
--> 173                 y = copier(memo)
    174             else:
    175                 reductor = dispatch_table.get(cls)

/usr/local/lib/python2.6/dist-packages/Traits-3.3.0-py2.6-linux-x86_64.egg/enthought/traits/trait_handlers.pyc in __deepcopy__(self, memo)
   2424             return memo[ id_self ]
   2425 
-> 2426         memo[ id_self ] = result = TraitListObject( self.trait, self.object(),
   2427                          self.name, [ copy.deepcopy( x, memo ) for x in self ] )
   2428 

AttributeError: 'TraitListObject' object has no attribute 'trait'
WARNING: Failure executing file: <spm_tutorial2.py>
Python 2.6.4 (r264:75706, Dec  7 2009, 18:43:55) 
Type "copyright", "credits" or "license" for more information.

IPython 0.10 -- An enhanced Interactive Python.
?         -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help      -> Python's own help system.
object?   -> Details about 'object'. ?object also works, ?? prints more.

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