gistfile1.txt

DEBUG:workflow:Collecting precomputed outputs:
DEBUG:workflow:Aggregate: False
DEBUG:workflow:setting input: level1.smooth0->level1.analysis.modelspec30 {'connect': [('smoothed_files', 'functional_runs')]}
DEBUG:workflow:setting node input: functional_runs->['/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/smooth/srf3.nii', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/smooth/srf5.nii', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/smooth/srf7.nii', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/smooth/srf10.nii']
DEBUG:workflow:setting nodelevel input functional_runs = ['/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/smooth/srf3.nii', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/smooth/srf5.nii', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/smooth/srf7.nii', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/smooth/srf10.nii']
DEBUG:workflow:setting input: level1.realign0->level1.analysis.modelspec30 {'connect': [('realignment_parameters', 'realignment_parameters')]}
DEBUG:workflow:setting node input: realignment_parameters->['/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/realign/rp_f3.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/realign/rp_f5.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/realign/rp_f7.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/realign/rp_f10.txt']
DEBUG:workflow:setting nodelevel input realignment_parameters = ['/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/realign/rp_f3.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/realign/rp_f5.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/realign/rp_f7.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/realign/rp_f10.txt']
DEBUG:workflow:setting input: level1.bootstrapI30->level1.analysis.modelspec30 {'connect': [('bootstraped_volume', 'functional_runs')]}
DEBUG:workflow:setting node input: functional_runs->/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/_id_3/bootstrap/ResI_0001_merged_dtype_bootstrap.nii
DEBUG:workflow:setting nodelevel input functional_runs = /media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/_id_3/bootstrap/ResI_0001_merged_dtype_bootstrap.nii
DEBUG:workflow:setting input: level1.art0->level1.analysis.modelspec30 {'connect': [('outlier_files', 'outlier_files')]}
DEBUG:workflow:setting node input: outlier_files->['/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/art/art.rf3_outliers.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/art/art.rf5_outliers.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/art/art.rf7_outliers.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/art/art.rf10_outliers.txt']
DEBUG:workflow:setting nodelevel input outlier_files = ['/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/art/art.rf3_outliers.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/art/art.rf5_outliers.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/art/art.rf7_outliers.txt', '/media/sdb2/nipype_examples/bootstrapping/workingdir/level1/_subject_id_s1/art/art.rf10_outliers.txt']
INFO:workflow:Node: modelspec30
INFO:workflow:in dir: /media/sdb2/nipype_examples/bootstrapping/workingdir/level1/analysis/_subject_id_s1/_id_3/modelspec
DEBUG:workflow:Node hash: 142c16028860cdb1c5dab1750ea665b1
DEBUG:workflow:Removing old /media/sdb2/nipype_examples/bootstrapping/workingdir/level1/analysis/_subject_id_s1/_id_3/modelspec and its contents
DEBUG:workflow:Creating /media/sdb2/nipype_examples/bootstrapping/workingdir/level1/analysis/_subject_id_s1/_id_3/modelspec
DEBUG:workflow:Unable to write a particular type to the json file
DEBUG:workflow:Executing node
ERROR:workflow:['Node modelspec30 failed to run on host filo-dtc.']
DEBUG:workflow:creating pickleable graph
Traceback (most recent call last):
  File "/home/filo/workspace/nipype/examples/bootstrapping.py", line 281, in <module>
    l1pipeline.run()
  File "/home/filo/workspace/nipype/nipype/pipeline/engine.py", line 417, in run
    self._execute_with_manager()
  File "/home/filo/workspace/nipype/nipype/pipeline/engine.py", line 714, in _execute_with_manager
    self._execute_in_series()
  File "/home/filo/workspace/nipype/nipype/pipeline/engine.py", line 637, in _execute_in_series
    crashfile = node._report_crash(execgraph=self._execgraph)
  File "/home/filo/workspace/nipype/nipype/pipeline/engine.py", line 190, in _report_crash
    show_connectinfo=True)
  File "/home/filo/workspace/nipype/nipype/pipeline/utils.py", line 50, in _create_pickleable_graph
    pklgraph = deepcopy(graph)
  File "/usr/lib/python2.6/copy.py", line 189, in deepcopy
    y = _reconstruct(x, rv, 1, memo)
  File "/usr/lib/python2.6/copy.py", line 338, in _reconstruct
    state = deepcopy(state, memo)
  File "/usr/lib/python2.6/copy.py", line 162, in deepcopy
    y = copier(x, memo)
  File "/usr/lib/python2.6/copy.py", line 255, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/lib/python2.6/copy.py", line 162, in deepcopy
    y = copier(x, memo)
  File "/usr/lib/python2.6/copy.py", line 255, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/lib/python2.6/copy.py", line 189, in deepcopy
    y = _reconstruct(x, rv, 1, memo)
  File "/usr/lib/python2.6/copy.py", line 338, in _reconstruct
    state = deepcopy(state, memo)
  File "/usr/lib/python2.6/copy.py", line 162, in deepcopy
    y = copier(x, memo)
  File "/usr/lib/python2.6/copy.py", line 255, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/lib/python2.6/copy.py", line 189, in deepcopy
    y = _reconstruct(x, rv, 1, memo)
  File "/usr/lib/python2.6/copy.py", line 338, in _reconstruct
    state = deepcopy(state, memo)
  File "/usr/lib/python2.6/copy.py", line 162, in deepcopy
    y = copier(x, memo)
  File "/usr/lib/python2.6/copy.py", line 255, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/lib/python2.6/copy.py", line 189, in deepcopy
    y = _reconstruct(x, rv, 1, memo)
  File "/usr/lib/python2.6/copy.py", line 338, in _reconstruct
    state = deepcopy(state, memo)
  File "/usr/lib/python2.6/copy.py", line 162, in deepcopy
    y = copier(x, memo)
  File "/usr/lib/python2.6/copy.py", line 255, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/lib/python2.6/copy.py", line 162, in deepcopy
    y = copier(x, memo)
  File "/usr/lib/python2.6/copy.py", line 228, in _deepcopy_list
    y.append(deepcopy(a, memo))
  File "/usr/lib/python2.6/copy.py", line 162, in deepcopy
    y = copier(x, memo)
  File "/usr/lib/python2.6/copy.py", line 255, in _deepcopy_dict
    y[deepcopy(key, memo)] = deepcopy(value, memo)
  File "/usr/lib/python2.6/copy.py", line 173, in deepcopy
    y = copier(memo)
  File "/usr/local/lib/python2.6/dist-packages/Traits-3.3.0-py2.6-linux-x86_64.egg/enthought/traits/trait_handlers.py", line 2427, in __deepcopy__
    self.name, [ copy.deepcopy( x, memo ) for x in self ] )
  File "/usr/local/lib/python2.6/dist-packages/Traits-3.3.0-py2.6-linux-x86_64.egg/enthought/traits/trait_handlers.py", line 2397, in __init__
    self.object     = ref( object )
TypeError: cannot create weak reference to 'NoneType' object