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chrisgorgo/circle.yml

Created May 10, 2016 17:25
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Testing for academics!
Raw
circle.yml
## Customize dependencies
dependencies:
pre:
- sudo apt-get update && sudo apt-get -y install r-base
## Customize test commands
test:
override:
- Rscript demean_age.R
Raw
demean_age.R
demographics <- read.csv(file='participants.tsv', head=TRUE, sep="\t")
age <- demographics[4]
demean_age <- age - sum(age)/length(age)
write.table(demean_age, file="age_demeaned.tsv", row.names=FALSE, col.names=FALSE, sep="\t")
print("done!")
Raw
participants.tsv
participant_id age sex m_SSRTquant m_NumPumps_Avg m_TotalAmt_Avg m_NumExplAvg m_logit_k m_AN-SN b_SSRTquant b_NumPumps_Avg b_TotalAmt_Avg b_NumExplAvg b_k b_AN-SN GABS_TOTAL CARE_ENGAGING-DRUG CARE_ENGAGING-AGGR/ILLEG CARE_ENGAGING-SEX CARE_ENGAGING-DRINKING CARE_ENGAGING-SPORTS CARE_ENGAGING-TOTAL CARE_NEGCONS-DRUG CARE_NEGCONS-AGGR/ILLEG CARE_NEGCONS-SEX CARE_NEGCONS-DRINKING CARE_NEGCONS-SPORTS CARE_NEGCONS-TOTAL CARE_POSCONS-DRUG CARE_POSCONS-AGGR/ILLEG CARE_POSCONS-SEX CARE_POSCONS-DRINKING CARE_POSCONS-SPORTS CARE_POSCONS-TOTAL NEED FOR COG_TOTAL COG REFLECTION_NUM CORR COG.1 REFLECTION_CONFIDENCE COG.2 REFLECTION_NUM.1 SEEN SENS SEEK_BOREDOM SENS.1 SEEK_DISINHIB SENS.2 SEEK_EXP SEEK SENS.3 SEEK_THRILL SEEK.1 SENS.4 SEEK_TOTAL BIS_ATTN BIS_MOTOR BIS_NP BIS_TOTAL BIS/BAS_BAS-REWRESP BIS/BAS_BAS-FUNSEEK BIS/BAS_BAS-DRIVE BIS/BAS_BAS TOTAL BIS/BAS_BIS DOSPERT_RT-ETH DOSPERT_RT-FIN DOSPERT_RT-HLTH/SAF DOSPERT_RT-REC DOSPERT_RT-SOC DOSPERT_RT-TOTAL DOSPERT_RP-ETH DOSPERT_RP-FIN DOSPERT_RP-HLTH/SAF DOSPERT_RP-REC DOSPERT_RP-SOC DOSPERT_RP-TOTAL DOSPERT_EB-ETH DOSPERT_EB-FIN DOSPERT_EB-HLTH/SAF DOSPERT_EB-REC DOSPERT_EB-SOC DOSPERT_EB-TOTAL PANAS_(Post-Pre)-Interested PANAS_(Post-Pre)-Distressed PANAS_(Post-Pre)-Excited PANAS_(Post-Pre)-Upset PANAS_(Post-Pre)-Strong
sub-01 20 F 154.8 5.33 46.0 8 0.0042 0.6 106.7 23.18 7.915 7.5 0.0014 1.1 76 3 14 6 3 17 58 21 53 42 21 12 182 3 14 6 3 25 62 76 3 5 0 37 12 46 57 152 14 20 16 50 24 15 11 50 34 12 12 10 17 18 69 37 36 40 33 31 177 14 17 6 19 15 71 0 -1 0 -1 0 0 0 0 2 0 0 0 0 0 0 3 0 0 1 -1
sub-02 26 F 259.0 6.17 39.75 15 0.0014 1.65 126.2 27.38 6.83 15.0 0.003 1.64 87 3 9 18 3 16 66 21 63 42 21 10 180 3 9 12 3 28 72 89 1 6 0 48 34 52 49 183 15 30 21 66 21 15 16 52 21 24 15 21 23 36 119 22 36 33 35 10 136 23 23 9 29 24 108 0 0 -1 0 0 0 0 0 1 -2 0 1 0 1 1 0 0 0 0 0
sub-03 22 M 176.1 5.36 42.0 10 0.0646 0.665 157.8 21.79 7.655 6.5 0.0591 0.75 105 11 20 12 20 17 113 13 39 25 13 7 118 14 12 24 13 21 92 64 2 6 0 46 67 65 74 260 26 30 35 91 23 18 9 50 26 19 28 26 23 33 129 30 28 34 33 19 144 20 23 11 14 24 92 1 -1 0 1 1 0 1 0 0 1 -1 0 0 1 -1 0 0 0 1 0
sub-04 19 M 99.5 5.75 42.5 12 0.0021 0.755 134.5 27.53 7.45 13.5 0.0016 0.5 81 19 26 26 18 15 127 5 43 24 8 11 111 18 26 23 15 21 126 87 3 4 0 57 70 81 63 277 18 23 24 65 19 16 16 51 22 18 15 26 25 33 117 21 30 27 27 21 126 28 21 23 32 27 131 2 -1 1 -1 1 0 -1 0 2 0 0 1 0 1 -1 1 0 0 0 -1
sub-05 20 F 125.4 5.72 44.0 11 0.004 0.15 97.0 19.9 7.21 5.5 0.0032 -0.05 96 3 23 9 13 6 76 13 46 38 13 10 143 7 15 10 11 24 79 77 3 6 0 60 59 63 48 237 20 24 22 66 25 15 15 55 29 21 20 15 11 32 99 24 32 35 24 22 137 17 19 10 24 27 97 2 -3 3 -2 1 0 -4 0 3 1 0 -2 0 2 -4 3 0 -2 -1 -3
sub-06 21 M 114.8 5.78 43.25 12 0.0025 1.2 98.8 21.56 7.24 7.5 0.0033 0.5 86 3 16 6 10 16 63 17 51 42 11 9 159 4 15 6 8 19 58 95 2 5 0 37 52 61 74 226 19 26 27 72 22 17 11 50 28 12 19 23 16 31 101 31 30 32 34 21 148 12 21 14 19 19 85 1 -2 1 -2 1 -1 -1 -3 1 1 -1 1 -1 0 -2 -2 1 -1 0 -2
sub-07 21 M 160.2 5.61 43.0 11 0.1252 0.7 143.7 23.29 8.155 7.0 0.0422 0.82 87 3 28 12 3 18 86 16 53 35 16 9 159 7 24 18 5 23 93 83 1 6 3 34 37 58 68 197 17 24 26 67 20 10 13 43 26 24 23 26 27 31 131 30 29 26 28 23 136 17 25 14 20 20 96 1 -1 1 -2 1 0 0 0 1 0 -1 0 -1 1 0 0 0 0 0 0
sub-09 20 M 196.8 5.61 35.5 15 0.0016 0.9 169.6 25.64 7.71 10.5 0.0019 0.75 75 3 12 8 3 9 58 18 43 23 14 6 123 3 10 9 3 19 52 89 3 6 3 36 20 40 23 119 17 23 21 61 20 13 14 47 23 10 15 10 12 33 80 19 30 22 20 10 101 18 20 9 21 27 95 2 0 2 0 1 0 -1 0 1 1 1 0 0 0 -1 1 0 1 0 0
sub-10 19 F 114.6 5.53 37.25 14 0.0205 0.065 156.0 24.72 7.54 10.0 0.0179 0.43 82 3 19 10 3 6 58 21 49 36 21 21 176 3 9 7 3 9 39 64 1 2 0 36 26 52 52 171 22 21 27 70 24 10 11 45 33 19 14 13 26 22 94 31 39 37 34 29 170 16 16 6 12 22 72 3 -2 2 -2 2 0 -3 -1 3 4 -1 3 0 0 -1 3 1 1 2 -2
sub-11 19 F 172.4 5.81 42.0 13 0.0031 0.4 192.3 26.74 7.515 12.5 0.0011 0.55 85 4 10 8 3 7 45 11 44 32 15 7 130 5 14 13 4 11 56 78 1 4 0 60 48 60 32 200 21 20 28 69 20 13 12 45 26 21 17 14 20 30 102 20 30 31 27 19 127 16 17 9 13 24 79 1 -2 2 0 2 0 0 0 1 1 0 -1 0 0 -1 0 -1 -2 1 0
sub-12 18 M 143.1 4.78 44.75 6 0.0002 0.6 172.0 21.92 8.11 5.5 0.0004 0.88 86 3 9 6 5 16 60 16 59 35 19 4 162 3 9 12 5 22 59 88 3 5 0 20 34 54 33 143 18 25 26 69 24 10 12 46 30 8 22 22 13 30 95 32 33 23 25 18 131 19 19 16 10 13 77 1 1 2 1 0 2 0 0 2 0 0 -1 1 0 -1 0 0 3 2 0
sub-13 18 M 174.0 5.47 39.0 13 0.0145 1.2 138.2 22.56 7.26 9.0 0.0042 0.92 84 15 10 8 16 16 79 10 57 35 12 12 158 13 13 14 12 24 83 106 1 5 1 43 55 76 61 239 15 20 26 61 21 19 15 55 27 7 19 15 33 33 107 30 27 32 21 12 122 11 24 10 26 23 94 1 -1 2 -1 0 0 0 -1 2 0 0 2 0 0 1 2 0 2 1 0
sub-14 19 M 93.5 5.81 41.5 13 0.0008 0.955 150.0 27.14 7.33 13.5 0.0014 1.3 81 3 18 15 3 16 73 21 52 27 21 7 159 4 13 22 4 25 79 95 2 3 2 40 15 60 78 195 18 25 23 66 24 14 9 47 27 11 23 16 30 27 107 34 31 37 22 20 144 18 24 15 24 26 107 2 -1 3 0 -1 -1 1 0 4 1 -1 1 0 1 2 2 1 0 1 0
sub-16 20 M 156.0 5.92 41.25 13 0.0023 1.1 306.7 21.43 7.865 5.5 0.0006 1.41 89 19 24 26 21 23 134 5 42 26 3 7 102 21 27 35 21 27 150 104 2 6 2 57 73 81 40 256 16 28 20 64 23 20 14 57 13 13 26 26 32 32 129 32 32 37 28 28 157 32 42 15 28 25 142 0 -1 1 0 1 0 0 0 1 0 0 1 -1 1 0 3 0 2 2 0
sub-17 18 F 397.5 5.11 48.0 5 0.0133 0.645 166.9 23.74 7.2 10.0 0.0084 0.85 77 3 17 6 3 22 68 21 47 40 19 11 164 3 15 9 3 21 58 83 2 1 3 42 17 57 82 198 19 19 24 62 21 16 12 49 24 8 10 17 29 23 87 37 34 35 32 25 163 6 17 10 27 18 78 1 -2 1 -2 2 -1 0 0 3 1 -1 1 -1 0 0 0 0 -2 1 0
sub-18 22 M 144.7 6.0 43.5 13 0.0031 0.3 80.9 23.15 7.445 9.0 0.0053 n/a 91 3 11 12 15 22 83 17 52 29 8 5 132 6 13 17 10 26 85 89 3 5 0 46 30 49 73 203 16 23 22 61 20 9 16 45 13 14 22 14 34 26 110 31 29 29 14 28 131 16 22 8 30 16 92 0 0 1 -1 0 0 1 0 0 0 0 2 0 0 0 1 1 0 2 0
sub-20 22 M 159.4 5.72 39.0 14 0.0067 1.22 87.7 25.5 6.765 13.0 0.0123 0.89 92 4 14 10 17 22 83 8 35 15 7 7 92 6 14 17 9 16 68 83 3 6 0 39 46 58 77 227 14 16 28 58 19 12 15 46 22 12 25 24 34 32 127 17 27 27 18 12 101 16 32 11 18 17 94 2 -2 1 -2 0 -1 0 0 1 -1 0 0 0 0 -1 2 1 0 2 -2
sub-21 22 F 112.1 4.89 42.0 8 0.0029 1.32 147.6 21.43 7.49 6.5 0.005 -0.2 63 3 12 9 3 10 49 17 62 39 20 7 176 6 15 12 6 22 66 104 0 3 0 48 18 46 68 182 17 21 22 60 24 17 18 59 26 16 19 20 28 32 115 27 35 29 31 21 143 15 14 11 21 27 88 2 -3 0 -2 0 0 1 0 0 0 0 -3 -1 0 1 3 -1 0 0 1
sub-23 33 F 181.4 5.58 39.0 14 0.0073 1.3 131.7 28.06 6.77 15.5 0.0043 0.5 72 3 12 9 4 15 59 17 55 33 12 9 153 4 15 19 8 24 89 79 2 4 0 62 38 64 82 246 18 24 26 68 22 16 14 52 25 13 19 18 32 34 116 16 26 25 24 16 107 19 15 14 30 27 105 0 -1 1 -1 0 0 0 0 1 0 0 0 0 0 0 2 2 0 0 0
sub-24 27 F 150.4 5.72 37.0 15 0.0029 0.225 100.3 25.65 7.48 11.5 0.0009 0.54 77 6 11 8 8 28 72 11 41 30 14 10 132 13 13 15 9 28 95 85 1 5 0 49 56 65 76 252 11 14 22 47 17 15 9 41 18 14 22 15 35 37 123 22 19 27 24 12 104 18 23 8 30 22 101 1 0 0 0 2 0 0 0 2 0 0 1 0 0 0 0 1 0 0 0
sub-25 19 M 296.1 4.69 45.5 5 0.0014 0.26 120.1 21.94 7.26 8.5 0.001 0.2 85 2 13 8 3 7 39 4 36 31 18 8 122 3 23 18 4 11 64 82 1 1 0 38 39 36 47 165 16 20 21 57 19 14 15 48 22 12 17 9 16 24 78 24 32 35 24 20 135 25 17 13 13 23 91 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0
sub-26 19 M 158.1 5.25 46.5 7 0.0029 0.6 163.6 22.9 7.695 8.0 0.0009 0.45 87 3 14 8 5 16 56 14 48 31 12 10 142 4 16 10 9 20 65 70 0 2 1 37 30 25 72 172 18 19 20 57 19 12 16 47 26 15 11 12 19 22 79 22 36 29 32 20 139 15 10 14 23 21 83 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0
sub-28 20 F 130.5 5.14 46.25 7 0.0169 0.61 141.6 23.82 7.905 8.0 0.0103 0.81 86 3 15 6 3 15 54 20 56 42 20 11 183 9 15 7 3 24 64 88 2 3 2 51 34 37 77 199 21 19 25 65 21 13 12 46 29 15 27 13 23 28 106 28 28 32 37 24 149 14 35 14 27 24 114 2 -4 3 -3 2 0 -3 -1 4 3 -2 3 0 3 -3 3 3 -1 4 -4
sub-29 22 M 132.2 5.86 45.5 11 0.0052 0.95 121.2 25.75 7.795 10.5 0.0068 0.52 70 18 21 10 21 19 106 13 52 28 11 12 143 14 28 20 15 21 112 94 0 6 2 32 61 80 85 263 13 17 27 57 21 16 14 51 26 11 18 31 38 33 131 30 37 36 31 25 159 20 24 12 26 28 110 0 -3 1 0 3 0 0 0 4 4 0 1 0 0 0 3 3 0 1 0
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