Dockerfile that creates environment for Ali's cube sphere Oceananigans with plotting etc....

Dockerfile

FROM julia:1.6.1

RUN apt-get update && apt-get install -y hdf5-tools
RUN apt-get install -y ffmpeg
RUN apt-get install -y git
RUN apt-get install -y wget

RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
RUN chmod +x Miniconda3-latest-Linux-x86_64.sh
RUN ./Miniconda3-latest-Linux-x86_64.sh -b -p miniconda3
RUN . miniconda3/bin/activate && conda create -y --name=py39 python=3.9
RUN echo ". miniconda3/bin/activate" >> ~/.bashrc
RUN echo "conda activate py39" >> ~/.bashrc
SHELL ["/bin/bash", "--login", "-c"]
RUN conda install -y matplotlib
RUN conda install -y numpy
RUN conda install -y cartopy
RUN conda install -y scipy
RUN conda install -y --channel=conda-forge cmocean

RUN git clone https://github.com/clima/oceananigans.jl
# RUN cd oceananigans.jl/ && git checkout cnh/cube-corner-fiddling
ENV JULIA_DEPOT_PATH=/oceananigans.jl/.julia

RUN echo "cd oceananigans.jl" >> ~/.bashrc
RUN /usr/local/julia/bin/julia --project -e "using Pkg; Pkg.instantiate();"
RUN /usr/local/julia/bin/julia --project -e "using Oceananigans"
RUN /usr/local/julia/bin/julia --project -e 'using Pkg; Pkg.add("DataDeps")'
RUN /usr/local/julia/bin/julia --project -e 'using Pkg; Pkg.add("PyCall")'
RUN /usr/local/julia/bin/julia --project -e 'using PyCall; pyimport_conda("matplotlib.pyplot", "matplotlib")'
RUN /usr/local/julia/bin/julia --project -e 'using PyCall; pyimport_conda("numpy.ma", "numpy")'
RUN /usr/local/julia/bin/julia --project -e 'using PyCall; pyimport_conda("cartopy.crs", "cartopy")'
RUN /usr/local/julia/bin/julia --project -e 'using PyCall; pyimport_conda("cmocean", "cmocean","conda-forge")'
CMD ["/bin/bash","-c", "cd oceananigans.jl ; julia --project"]