Created
February 12, 2019 07:22
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BEAST trial runs
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126 6:makh1264,lobe1242,tswe1238,lozi1239,sout2807,tswa1253, | |
Fatal exception: 1704 | |
java.lang.ArrayIndexOutOfBoundsException: 1704 | |
at beast.evolution.tree.Tree.storeNodes(Tree.java:819) | |
at beast.evolution.tree.Tree.store(Tree.java:799) | |
at beast.evolution.tree.PrunedTree.insureStore(PrunedTree.java:572) | |
at beast.evolution.tree.PrunedTree.rq(PrunedTree.java:453) | |
at beast.evolution.tree.PrunedTree.requiresRecalculation(PrunedTree.java:374) | |
at beast.core.CalculationNode.checkDirtiness(CalculationNode.java:44) | |
at beast.core.State.checkCalculationNodesDirtiness(State.java:301) | |
at beast.core.MCMC.propagateState(MCMC.java:493) | |
at beast.core.MCMC.doLoop(MCMC.java:383) | |
at beast.core.MCMC.run(MCMC.java:353) | |
at beast.app.BeastMCMC.run(BeastMCMC.java:357) | |
at beast.app.beastapp.BeastMain.<init>(BeastMain.java:113) | |
at beast.app.beastapp.BeastMain.main(BeastMain.java:659) | |
Fatal exception: 1704 | |
java.lang.RuntimeException: An error was encounted. Terminating BEAST | |
at beast.app.util.ErrorLogHandler.publish(ErrorLogHandler.java:30) | |
at java.util.logging.Logger.log(Logger.java:738) | |
at java.util.logging.Logger.doLog(Logger.java:765) | |
at java.util.logging.Logger.log(Logger.java:788) | |
at java.util.logging.Logger.severe(Logger.java:1463) | |
at beast.app.beastapp.BeastMain.<init>(BeastMain.java:177) | |
at beast.app.beastapp.BeastMain.main(BeastMain.java:659) | |
-------------------------------------------------------------------------------- | |
560 3:bask1236,dorz1235,male1284, | |
Fatal exception: 1705 | |
java.lang.ArrayIndexOutOfBoundsException: 1705 | |
at beast.evolution.tree.Tree.storeNodes(Tree.java:819) | |
at beast.evolution.tree.Tree.store(Tree.java:799) | |
at beast.evolution.tree.PrunedTree.insureStore(PrunedTree.java:572) | |
at beast.evolution.tree.PrunedTree.rq(PrunedTree.java:453) | |
at beast.evolution.tree.PrunedTree.requiresRecalculation(PrunedTree.java:374) | |
at beast.core.CalculationNode.checkDirtiness(CalculationNode.java:44) | |
at beast.core.State.checkCalculationNodesDirtiness(State.java:301) | |
at beast.core.MCMC.propagateState(MCMC.java:493) | |
at beast.core.MCMC.doLoop(MCMC.java:383) | |
at beast.core.MCMC.run(MCMC.java:353) | |
at beast.app.BeastMCMC.run(BeastMCMC.java:357) | |
at beast.app.beastapp.BeastMain.<init>(BeastMain.java:113) | |
at beast.app.beastapp.BeastMain.main(BeastMain.java:659) | |
-------------------------------------------------------------------------------- | |
531 3:meen1242,suri1267,didi1258, | |
Fatal exception: 1705 | |
java.lang.ArrayIndexOutOfBoundsException: 1705 | |
at beast.math.distributions.MultiMonophyleticConstraint.isMonoJHNonBinary(MultiMonophyleticConstraint.java:337) | |
at beast.math.distributions.MultiMonophyleticConstraint.calculateLogP(MultiMonophyleticConstraint.java:184) | |
at beast.math.distributions.MultiMRCAPriors.calculateLogP(MultiMRCAPriors.java:62) | |
at beast.core.util.CompoundDistribution.calculateLogP(CompoundDistribution.java:114) | |
at beast.core.util.CompoundDistribution.calculateLogP(CompoundDistribution.java:114) | |
at beast.core.MCMC.propagateState(MCMC.java:496) | |
at beast.core.MCMC.doLoop(MCMC.java:383) | |
at beast.core.MCMC.run(MCMC.java:353) | |
at beast.app.BeastMCMC.run(BeastMCMC.java:357) | |
at beast.app.beastapp.BeastMain.<init>(BeastMain.java:113) | |
at beast.app.beastapp.BeastMain.main(BeastMain.java:659) |
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