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February 17, 2014 20:30
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Bio-BigFile patch for latest kent util API change
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From bce13df624f703ac7501aaa83f87fe644f187c1a Mon Sep 17 00:00:00 2001 | |
From: Chris Fields <cjfields@illinois.edu> | |
Date: Tue, 7 Jan 2014 14:31:47 -0600 | |
Subject: [PATCH] API change in kent utils; not sure how to check for the | |
version yet, so this branch will need a little more work | |
--- | |
Bio-BigFile/lib/Bio/DB/BigFile.xs | 6 ++++-- | |
1 file changed, 4 insertions(+), 2 deletions(-) | |
diff --git a/Bio-BigFile/lib/Bio/DB/BigFile.xs b/Bio-BigFile/lib/Bio/DB/BigFile.xs | |
index b69f611..a816fdf 100644 | |
--- a/Bio-BigFile/lib/Bio/DB/BigFile.xs | |
+++ b/Bio-BigFile/lib/Bio/DB/BigFile.xs | |
@@ -81,7 +81,7 @@ typedef struct asTypeInfo *Bio__DB__asTypeInfo; | |
MODULE = Bio::DB::BigFile PACKAGE = Bio::DB::BigFile PREFIX=bf_ | |
void | |
-bf_bigWigFileCreate(package="Bio::DB::BigFile",inName,chromSizes,blockSize=1024,itemsPerSlot=512,clipDontDie=TRUE,compress=TRUE,outName) | |
+bf_bigWigFileCreate(package="Bio::DB::BigFile",inName,chromSizes,blockSize=1024,itemsPerSlot=512,clipDontDie=TRUE,compress=TRUE,keepAllChromosomes=TRUE,fixedSummaries=TRUE,outName) | |
char *package | |
char *inName | |
char *chromSizes | |
@@ -89,9 +89,11 @@ bf_bigWigFileCreate(package="Bio::DB::BigFile",inName,chromSizes,blockSize=1024, | |
int itemsPerSlot | |
int clipDontDie | |
int compress | |
+ int keepAllChromosomes | |
+ int fixedSummaries | |
char *outName | |
CODE: | |
- bigWigFileCreate(inName,chromSizes,blockSize,itemsPerSlot,clipDontDie,compress,outName); | |
+ bigWigFileCreate(inName,chromSizes,blockSize,itemsPerSlot,clipDontDie,compress,keepAllChromosomes,fixedSummaries,outName); | |
void | |
bf_udcSetDefaultDir(packname="Bio::DB::BigFile",path) | |
-- | |
1.8.5.1 |
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