Created
November 29, 2016 22:12
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Download, install, and build Python 2.7.10 in a local folder
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# Create a folder where you want to install different Pythons, and cd into it: | |
# Note that it doesn't need to be your home folder. Put it wherever you want to maintain such software: | |
export PYTHON_BASE="$HOME/python" | |
mkdir -p $PYTHON_BASE | |
cd $PYTHON_BASE | |
# Download source tarball into a subfolder named src, and untar: | |
curl --create-dirs -L -o src/Python-2.7.10.tgz https://www.python.org/ftp/python/2.7.10/Python-2.7.10.tgz | |
cd src | |
tar -zxf Python-2.7.10.tgz | |
# Configure, build, and install into a properly versioned subdirectory: | |
cd Python-2.7.10 | |
./configure --prefix=$PYTHON_BASE/python-2.7.10 --enable-shared --enable-unicode=ucs4 LDFLAGS="-Wl,-rpath=$PYTHON_PREFIX/lib" | |
make | |
make install | |
# Make sure the latest setuptools and pip are installed: | |
$PYTHON_BASE/python-2.7.10/bin/python -m ensurepip | |
$PYTHON_BASE/python-2.7.10/bin/pip install --upgrade setuptools pip | |
# Install all the various packages we use here at MSKCC: | |
$PYTHON_BASE/python-2.7.10/bin/pip install --upgrade alabaster ansi argparse azure babel biopython drmaa filemagic fireworks fusepy ipython lockfile markerlib nose powerline-status pygments pyvcf sh snowballstemmer sphinx virtualenv wheel | |
$PYTHON_BASE/python-2.7.10/bin/pip install --upgrade pysam matplotlib pandas cython scipy |
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normal not use make install for python
for python use online
make altinstall
and for pip install not use
$PYTHON_BASE/python-2.7.10/bin/python -m ensurepip
use online
$PYTHON_BASE/python-2.7.10/bin/python -m ensurepip --altinstall