Created
November 15, 2017 11:12
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Fetch CSV hittable for NCBI online BLAST results
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| http://blast.ncbi.nlm.nih.gov/Blast.cgi?RESULTS_FILE=on&RID=REPLACE-BY-YOUR-RID&FORMAT_TYPE=CSV&FORMAT_OBJECT=Alignment&ALIGNMENT_VIEW=Tabular&CMD=Get |
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Upon performing an NCBI online BLAST search today [Wednesday, 15 November 2017], I found out that the formats provided for "Download" have changed. While JSON-formatted output may be convenient, I found the CSV output quite handy and use it in some scripts. Hence, finding out that the CSV-formatted output was missing in my case was annoying.
However, there is a workaround! Simply replace the
REPLACE-BY-YOUR-RIDpart the RID of your BLAST search and you should get again the CSV-formatted hit table!