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December 16, 2015 10:12
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NCBI-related information for HMP mock community http://downloads.hmpdacc.org/data/HMMC/HMPRP_sT1-Mock.pdf
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| #ATCC | NCBI taxonomy | Definition | GenBank | Comment | |
|---|---|---|---|---|---|
| ATCC 17978 | 400667 | Acinetobacter baumannii ATCC 17978 | CP000521.1 | ||
| ATCC 17982 | 411466 | Actinomyces odontolyticus ATCC 17982 | AAYI00000000.2 | ||
| ATCC 10987 | 222523 | Bacillus cereus ATCC 10987 | AE017194.1 | ||
| ATCC 8482 | 435590 | Bacteroides vulgatus ATCC 8482 | CP000139.1 | ||
| ATCC MYA-2876 | 237561 | Candida albicans SC5314 | GCA_000182965.2 | ||
| ATCC 51743 | 290402 | Clostridium beijerinckii NCIMB 8052 | CP000721.1 | Found NCBI ID -> Chose 'Identical GenBank Sequence' | |
| DSM 20539 | 243230 | Deinococcus radiodurans R1 | GCA_000008565.1 | ||
| ATCC 47077 | 474186 | Enterococcus faecalis OG1RF | NC_017316.1 | ||
| ATCC 700926 | 511145 | Escherichia coli str. K-12 substr. MG1655 | U00096.3 | Found via http://www.lgcstandards-atcc.org/products/all/700926.aspx?geo_country=de | |
| ATCC 700392 | 85962 | Helicobacter pylori 26695 | AE000511.1 | ||
| DSM 20243 | 324831 | Lactobacillus gasseri ATCC 33323 | CP000413.1 | ||
| ATCC BAA-679 | 169963 | Listeria monocytogenes EGD-e | AL591824.1 | ||
| ATCC 35061 | 420247 | Methanobrevibacter smithii ATCC 35061 | CP000678.1 | ||
| ATCC BAA-335 | 122586 | Neisseria meningitidis MC58 | AE002098.2 | Found via http://www.lgcstandards-atcc.org/Products/All/BAA-335.aspx#generalinformation | |
| DSM 16379 | 267747 | Propionibacterium acnes KPA171202 | AE017283.1 | Found NCBI ID -> Chose 'Identical GenBank Sequence' | |
| ATCC 47085 | 208964 | Pseudomonas aeruginosa PAO1 | AE004091.2 | Found via http://www.lgcstandards-atcc.org/Products/All/47085.aspx#history | |
| ATCC 17023 | 272943 | Rhodobacter sphaeroides 2.4.1 | GCA_000012905.2 | ||
| ATCC BAA-1718 | 93061 | Staphylococcus aureus subsp. aureus NCTC 8325 | CP000253.1 | A plethora (> 5000) of assemblies exist | |
| ATCC 12228 | 176280 | Staphylococcus epidermidis ATCC 12228 | AE015929.1 | ||
| ATCC BAA-611 | 208435 | Streptococcus agalactiae 2603V/R | AE009948.1 | ||
| ATCC 700610 | 210007 | Streptococcus mutans UA159 | AE014133.2 | ||
| ATCC BAA-334 | 170187 | Streptococcus pneumoniae TIGR4 | AE005672.3 |
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