Created
June 20, 2023 13:11
-
-
Save clayford/7052cf34d65f5b8ce6812eb788f6b5ad to your computer and use it in GitHub Desktop.
Reproduce Figure 2 of Pocock, et al (2002)
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# replicate Fig 2 of | |
# Pocock, S.J., Assmann, S.E., Enos, L.E. and Kasten, L.E. (2002), | |
# Subgroup analysis, covariate adjustment and baseline comparisons in clinical trial reporting: current practiceand problems. | |
# Statist. Med., 21: 2917-2930. https://doi.org/10.1002/sim.1296 | |
Z_x <- seq(-2, 2, 0.1) | |
rho <- c(0, 0.1, 0.3, 0.5, 0.7, 0.9) | |
d <- expand.grid(Z_x = Z_x, rho = rho) | |
Z_a <- qnorm(0.025, lower.tail = F) | |
d$size <- pnorm((Z_a - d$Z_x*d$rho)/sqrt(1 - d$rho^2), | |
lower.tail = F) | |
d$size2 <- qnorm(d$size) | |
library(ggplot2) | |
ggplot(d) + | |
aes(x = Z_x, y = size2, color = factor(rho)) + | |
geom_line() + | |
scale_y_reverse(limits = c(-0.5, -3.1), | |
breaks = qnorm(c(0.3, 0.2, 0.1, 0.05, 0.025, | |
0.01, 0.005, 0.002, 0.001)), | |
labels = c(0.3, 0.2, 0.1, 0.05, 0.025, | |
0.01, 0.005, 0.002, 0.001), | |
minor_breaks = NULL) + | |
labs(color = "rho", x = "standardized imbalance", | |
y = "size of unadjusted test given imblance and correlation") |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment