cmdcolin

#!/usr/bin/env Rscript

library(reshape2)
library(ggplot2)
library(tidytext)

x <- read.csv("cpu.csv")
y <- melt(x)
colnames(y) <- c("site", "variable", "s")
y$s <- y$s / 1000

cmdcolin

function TranscriptSelector() {
  const [error, setError] = useState();
  const [transcripts, setTranscripts] = useState();
  const [selection, setSelection] = useState();
  useEffect(() => {
    async () => {
      try {
        const result = await loadTranscripts(); // imagine this just returned a list of strings
        setTranscripts(result);
        setSelection(result[0]); // set the initial selection to the first transcript

cmdcolin

function MySelectBox() {
  const opts = ["apple", "banana", "orange"];
  const [mySelection, setMySelection] = useState("apple");
  return (
    <select
      value={mySelection}
      onChange={event => setMySelection(event.target.value)}
    >
      {opts.map(o => (
        <option key={o} value={o}>

cmdcolin

// this is a controlled component
function MyTextBox() {
  const [myValue, setMyValue] = useState('initial value')
  return <input type="text" value={myValue} onChange={event=>setMyValue(event.target.value)}/>
}

cmdcolin

#!/usr/bin/env bash

## uses home directory to avoid git clean in repo clearing files
touch ~/lines

## choice 1. for all commits
git log --pretty=format:'%h %as'|sed 's/ /\t/' >! ~/commitlog

## choice 2. for all tags
git for-each-ref --sort=creatordate --format '%(refname) %(creatordate:short)' refs/tags|sed -e 's/refs\/tags\///'|sed 's/ /\t/' >! ~/commitlog

cmdcolin

testing

cmdcolin

import { LocalFile } from 'generic-filehandle'
import NCList from '@gmod/nclist'
const filter = new Set([
  'Start',
  'End',
  'Strand',
  'Source',
  'Seq_id',
  'Name',
  'Score',

cmdcolin

  // example code for "hand-drawing the d3-hierarchy on a canvas"
  for (const { source, target } of hierarchy.links()) {
    const { x: sy, y: sx } = source
    const { x: ty, y: tx } = target

    ctx.beginPath()
    ctx.moveTo(sx, sy)
    ctx.lineTo(sx, ty)
    ctx.lineTo(tx, ty)
    ctx.stroke()

cmdcolin

#full google drive
#https://docs.google.com/spreadsheets/d/1ZpqZ3vVJ3ZIfdENLjeK0O7AYPewleSQ7ybT7DtotLK0/edit#gid=0
#this list slightly enriched for "weird names" by filtering out some not as interesting names using grep
#grep -v lncRNA|grep -v snoRNA|grep -v Su\(Ste\)|grep -v Male-specific|grep -v receptor|grep -v Zinc|grep -v antisense|grep -v ase|grep -v chain|grep -v factor|grep -v nuclear|grep -v loop|grep -v -i protein|grep -v RNA|grep -v Cell|grep -v Ste:|grep -v domain|grep -v Cytochrome|grep -v polypep|less|grep -v His
211000022279188:1449-2180	shortname=SteXh:CG42398	fullname=SteXh:CG42398
2L:10032690-10038954	shortname=obst-B	fullname=obstructor-B
2L:10056900-10060095	shortname=Pen	fullname=Pendulin
2L:10060816-10063925	shortname=Spn31A	fullname=Serpin 31A
2L:10204757-10206961	shortname=Snx17	fullname=Sorting nexin 17
2L:10211143-10213721	shortname=ath	fullname=athos

cmdcolin

/* eslint-disable no-restricted-globals */
;(function () {
  class UMDLocPlugin {
    name = 'UMDLocPlugin'
    version = '1.0'

    install(pluginManager) {
      /* do nothing */
    }