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@cnrdh
cnrdh / dmp-zooplankton-gbif-2020.md
Last active October 30, 2020 13:36
Data management plan
@cnrdh
cnrdh / placenames-deps.svg
Created July 3, 2020 08:38
placenames dependency graph
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@cnrdh
cnrdh / normal-frame-1.json
Last active June 18, 2019 09:03
Argos JSON
{
"programNumber": "32660",
"platformId": "57579",
"platformType": "BIRD",
"platformModel": "M-5GS",
"platformName": "",
"platformHexId": "4EBC4BE",
"latitude": 74.26637,
"longitude": 19.68254,
"altitude": 0,
@cnrdh
cnrdh / kvitøyjøkulen.geojson
Created June 7, 2019 10:03
Kvitøyjøkulen (GeometryCollection)
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@cnrdh
cnrdh / _readme.md
Last active January 8, 2019 12:38
Data from ice mass balance buoy deployed in Fram Strait fast ice 2014

Data from ice mass balance buoy deployed in Fram Strait fast ice 2014

Last message with sensor data:

{"deployed_year":2013,"buoy_number":9,"buoy_type":1,"year":2014,"day_of_year":260,"minutes_in_day":240,"latitude":79.3618,"longitude":-13.0531,"air_temperature":-6.18,"air_pressure":1023.15,"snow":1.49,"under":2.79,"battery":13.38,"internal_temperature":-4.83,"t45":[-6.22,-6.26,-6.27,-6.28,-6.3,-6.31,-4.01,-1.92,-0.96,-0.17,0,-0.04,-0.04,-0.13,-0.21,-0.35,-0.45,-0.51,-0.55,-0.56,-0.51,-0.52,-0.47,-0.4,-0.41,-0.36,-0.41,-0.42,-0.45,-0.49,-1.03,-1.37,-1.37,-1.39,-1.4,-1.39,-1.37,-1.38,-1.38,-1.36,-1.4,-1.37,-1.41,-1.42,-1.48],"hex":"0d09010e010400f00c1c1234f09d1506cc5b00950117053a158d150214fe14fd14fc14fa14f915df16b01710175f1770176c176c1763175b174d1743173d17391738173d173c174117481747174c174717461743173f170916e716e716e516e416e516e716e616e616e816e416e716e316e216dc"}

Data extraction

@cnrdh
cnrdh / mosj2016-decomposed.txt
Last active December 7, 2018 15:31
Decmposing scientific names
{"lifeStage":"cyst","scientificName":"Chrysophycean","identificationQualifer":"indet."} <- "Chrysophycean indet. cyst"
{"lifeStage":"cyst","scientificName":"Ciliophora","identificationQualifer":"indet."} <- "Ciliophora indet. cyst"
{"lifeStage":"cyst","scientificName":"Dinophycean","identificationQualifer":"indet."} <- "Dinophycean indet. cyst"
{"lifeStage":"cyst","scientificName":"Polarella glacialis"} <- "Polarella glacialis cyst"
{"scientificName":"aff. Telonema","identificationQualifer":"sp."} <- "aff. Telonema sp."
{"scientificName":"Alexandrium","identificationQualifer":"sp."} <- "Alexandrium sp."
{"scientificName":"Alexandrium","identificationQualifer":"sp. cf. A. minutum"} <- "Alexandrium sp. cf. A. minutum"
{"scientificName":"Amphidinium","identificationQualifer":"sp."} <- "Amphidinium sp."
{"scientificName":"Amphidinium","identificationQualifer":"sphenoides"} <- "Amphidinium sphenoides"
{"scientificName":"Asteromphalus","identificationQualifer":"sp."} <- "Asteromphalus sp."
@cnrdh
cnrdh / buoy-joubeh-300025010632870-linestring.geojson
Last active January 8, 2019 09:53
Data from ice mass buoy deployed east of Greenland 2016
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@cnrdh
cnrdh / 9680.geojson
Last active November 22, 2018 14:22
Argos polar bear platforms 9680 and 9681
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@cnrdh
cnrdh / match.txt
Created November 16, 2018 13:05
Known species
ndjson-join --left 'd.scientificName' ~/nedlasta/alien.ndjson data/input/taxonomy/taxonomy-db.ndjson | ndjson-map 'match=!(null==d[1]), [d[0].scientificName,match, d[0], d[1]]' | grep true
["Oithona similis",true,{"Division":"crustaceans","Genus":"Oithona","Species":"similis","scientificName":"Oithona similis","":"","Endemic":"","Cosmopolitic":"","Natural dispersion":"","Alien":"","Invasive":""},{"scientificName":"Oithona similis","taxonRank":"species","synonym":"false","taxonomicStatus":"accepted","scientificNameAuthorship":"Claus, 1866","modified":"2018-02-01T17:59:34.278+0000","kingdom":"Animalia","phylum":"Arthropoda","class":"Hexanauplia","order":"Cyclopoida","family":"Oithonidae","genus":"Oithona","taxonID":"https://api.gbif.org/v1/species/5166639","references":"","taxonRemarks":"","type":"Taxon"}]
["Thalassiosira",true,{"Division":"diatoms","Genus":"Thalassiosira","Species":"sp.","scientificName":"Thalassiosira","":"","Endemic":"","Cosmopolitic":"","Natural dispersion":"","Alien":"","Invasive":""},{"sc
@cnrdh
cnrdh / readme.md
Last active October 23, 2018 09:21
Argos CSV

Argos CSV variants

CSV exported from Argos web page

headers: (37) ["_120_db", "alarm", "altitude", "best_level", "comp", "delta_freq", "ellipse_orientation", "error_radius", "format_name", "frequency", "gdop", "heading", "lat_sol_1", "lat_sol_2", "latitude", "loc_date", "loc_idx", "loc_quality", "long_1", "long_2", "longitude", "low_voltage_flag", "msg", "msg_date", "nopc", "pass_dur__s", "platform", "platform_id_no", "prg_no", "raw_data", "saltwater_failsafe_flag", "sat", "semi_major_axis", "semi_minor_axis", "speed", "temperature", "underwater_percentage"]

Platform ID No.,Platform,Prg No.,Pass dur. (s),Msg Date,Sat.,Alarm,Format name,Loc. date,Longitude,Latitude,Altitude,Heading,Speed,Loc. quality,Frequency,Long. 1,Lat. sol. 1,Long. 2,Lat. sol. 2,Loc. idx,Nopc,Comp.,Msg,> - 120 DB,Best level,Delta freq.,Error radius,Semi-major axis,Semi-minor axis,Ellipse orientation,GDOP,Raw data,LOW VOLTAGE FLAG,SALTWATER FAILSAFE FLAG,TEMPERATURE,UNDERWATER PERCENTAGE
153814,,18660,0,2018-10-01 01:28:08,NK,N