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@samth
samth / problems.md
Last active August 29, 2015 13:57
Reproducing reproduction.
@pbailis
pbailis / reproducibility.md
Last active February 15, 2016 12:18
Reproducing (un)reproducibility results

edit: see http://cs.brown.edu/~sk/Memos/Examining-Reproducibility/

Not deserving of a full post, but nonetheless worth writing about: @ongardie, @aalevy, and a few others on Twitter were surprised by the number of papers that were flagged as "not reproducible" according to the recent study at http://reproducibility.cs.arizona.edu. Digging deeper, it appeared that 1.) "code builds" is the standard for reproducibility in this study and that 2.) many broken builds were the result of missing dependencies on the researchers' systems.

I tried reproducing a few of the authors' "unreproducible" results. It's hard to vet 600+ research code repositories, but, with a little effort (< ~10 minutes each?), I was able to get all of the following to actually build (on Ubuntu 13.10). This doesn't inspire confidence in the reproducibility of the study results.

Peter pbailis@cs.berkeley.edu

@ivanov
ivanov / git-recheckout
Created November 7, 2013 20:16
Your local checkout of a branch, and the remote branch it tracks are out of sync. You want to check it out again, discarding your version of the branch.
#!/bin/bash
# git-recheckout: git reset to the upstream branch
#
# Your local checkout of a branch, and the remote branch it tracks are out of
# sync. You want to check it out again, discarding your version of the branch.
#
# Because you need to know the remotename/branchname string to reset to
#
# 1. get the remotename/the-branch combination
# 2. git reset remotename/the-branch
@audreyfeldroy
audreyfeldroy / pypi-release-checklist.md
Last active February 23, 2023 15:03
My PyPI Release Checklist
  • Update HISTORY.md
  • Commit the changes:
git add HISTORY.md
git commit -m "Changelog for upcoming release 0.1.1."
  • Update version number (can also be minor or major)
bumpversion patch
@postrational
postrational / gunicorn_start.bash
Last active April 4, 2024 12:48
Example of how to set up Django on Nginx with Gunicorn and supervisordhttp://michal.karzynski.pl/blog/2013/06/09/django-nginx-gunicorn-virtualenv-supervisor/
#!/bin/bash
NAME="hello_app" # Name of the application
DJANGODIR=/webapps/hello_django/hello # Django project directory
SOCKFILE=/webapps/hello_django/run/gunicorn.sock # we will communicte using this unix socket
USER=hello # the user to run as
GROUP=webapps # the group to run as
NUM_WORKERS=3 # how many worker processes should Gunicorn spawn
DJANGO_SETTINGS_MODULE=hello.settings # which settings file should Django use
DJANGO_WSGI_MODULE=hello.wsgi # WSGI module name
@jiffyclub
jiffyclub / swc-vm.pp
Last active December 16, 2015 23:09
Puppet manifest for a VM suitable for Software Carpentry boot camps.
package { "dkms":
ensure => latest,
}
package { "chromium-browser":
ensure => latest,
}
package { "emacs":
ensure => latest,
@stefanv
stefanv / hint.ipynb
Created November 12, 2012 19:50
Hints in the notebook
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@insin
insin / bash_prompt.sh
Created December 3, 2011 01:49 — forked from woods/git_svn_bash_prompt.sh
Set color bash prompt according to active virtualenv, git branch and return status of last command.
#!/bin/bash
#
# DESCRIPTION:
#
# Set the bash prompt according to:
# * the active virtualenv
# * the branch/status of the current git repository
# * the return value of the previous command
# * the fact you just came from Windows and are used to having newlines in
# your prompts.
@richleland
richleland / settings.py
Created October 29, 2011 11:00
S3BotoStorage subclass for media and static buckets
DEFAULT_FILE_STORAGE = 'storages.backends.s3boto.S3BotoStorage'
STATICFILES_STORAGE = 'path.to.storage.S3StaticStorage'
THUMBNAIL_DEFAULT_STORAGE = 'storages.backends.s3boto.S3BotoStorage'
AWS_ACCESS_KEY_ID = 'YOUR KEY'
AWS_SECRET_ACCESS_KEY = 'YOUR KEY'
AWS_STORAGE_BUCKET_NAME = 'media.YOURSITE.com'
AWS_STATIC_BUCKET_NAME = 'static.YOURSITE.com'
AWS_S3_CUSTOM_DOMAIN = AWS_STORAGE_BUCKET_NAME
AWS_STATIC_CUSTOM_DOMAIN = AWS_STATIC_BUCKET_NAME
STATIC_URL = 'http://%s/' % AWS_STATIC_BUCKET_NAME