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Colin Davenport
colindaven
Bioinformatician at KWS SAAT SE. Nextflow, bioinformatics, metagenomics. My code is unfortunately mostly private.
Docker is a tool for bundling together applications and their dependencies into
images that can than be run as containers on many different types of computers.
Docker and other containerization tools are useful to scientists because:
It greatly simplifies distribution and installation of complex work flows that
MAKER is a great tool for annotating a reference genome using empirical and ab initio gene predictions. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite simplified examples and it took a bit of effort to wrap my head completely around everything. Here I will describe a de novo genome annotation for Boa constrictor in detail, so that there is a record and that it is easy to use this as a guide to annotate any genome.
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