Test tree for Auspice PR #1655

auspice.json

{"version":"v2","meta":{"title":"SARS-CoV-2 phylogeny","updated":"2023-03-22","build_url":"https://github.com/neherlab/nextclade_data_workflows","maintainers":[{"name":"Cornelius Roemer","url":"https://neherlab.org"},{"name":"Richard Neher","url":"https://neherlab.org"}],"display_defaults":{"color_by":"clade_membership","distance_measure":"div","map_triplicate":false,"branch_label":"clade","transmission_lines":false},"genome_annotations":{"nuc":{"end":29903,"start":1,"strand":"+","seqid":"defaults/reference_seq.gb","type":"source"},"E":{"end":26472,"seqid":"defaults/reference_seq.gb","start":26245,"strand":"+","type":"CDS"},"M":{"end":27191,"seqid":"defaults/reference_seq.gb","start":26523,"strand":"+","type":"CDS"},"N":{"end":29533,"seqid":"defaults/reference_seq.gb","start":28274,"strand":"+","type":"CDS"},"ORF1a":{"end":13468,"seqid":"defaults/reference_seq.gb","start":266,"strand":"+","type":"CDS"},"ORF1b":{"end":21555,"seqid":"defaults/reference_seq.gb","start":13468,"strand":"+","type":"CDS"},"ORF3a":{"end":26220,"seqid":"defaults/reference_seq.gb","start":25393,"strand":"+","type":"CDS"},"ORF6":{"end":27387,"seqid":"defaults/reference_seq.gb","start":27202,"strand":"+","type":"CDS"},"ORF7a":{"end":27759,"seqid":"defaults/reference_seq.gb","start":27394,"strand":"+","type":"CDS"},"ORF7b":{"end":27887,"seqid":"defaults/reference_seq.gb","start":27756,"strand":"+","type":"CDS"},"ORF8":{"end":28259,"seqid":"defaults/reference_seq.gb","start":27894,"strand":"+","type":"CDS"},"ORF9b":{"end":28577,"seqid":"defaults/reference_seq.gb","start":28284,"strand":"+","type":"CDS"},"S":{"end":25384,"seqid":"defaults/reference_seq.gb","start":21563,"strand":"+","type":"CDS"}},"description":"This phylogeny shows evolutionary relationships of SARS-CoV-2 viruses from the ongoing novel coronavirus COVID-19 pandemic.\n\nAll data we use were deposited in GISAID by scientists around the world.\nWe gratefully acknowledge the authors, originating and submitting laboratories of the genetic sequence and metadata made available through [GISAID](https://gisaid.org) on which this research is based. A full listing of all originating and submitting laboratories is available below. 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