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cory-ko-g/patch.txt

Created February 4, 2012 13:41
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patch.txt
--- Makefile.org 2011-07-07 11:59:22.000000000 +0900
+++ Makefile 2012-02-04 22:11:13.255505335 +0900
@@ -1,5 +1,5 @@
CC= gcc
-CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
+CFLAGS= -g -Wall -O2 -fPIC #-m64 #-arch ppc
DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1
KNETFILE_O= knetfile.o
LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
@@ -10,9 +10,9 @@
bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
cut_target.o phase.o bam2depth.o
PROG= samtools
-INCLUDES= -I.
+INCLUDES= -I. -I/usr/local/include/
SUBDIRS= . bcftools misc
-LIBPATH=
+LIBPATH= -L/usr/local/lib
LIBCURSES= -lcurses # -lXCurses
.SUFFIXES:.c .o
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