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craigmccauley/QueryMISTIC.bat

Created October 17, 2020 13:53
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Batch file for querying the MISTIC dataset
Raw
QueryMISTIC.bat
@echo off
set /p chrom="Enter chromosome: "
set /p pos="Enter position: "
echo.
echo Searching for
echo Chromosome: %chrom% Position: %pos%
"C:\Program Files (x86)\Log Parser 2.2\LogParser.exe" -i:TSV -nSkipLines:1 -e:1 -dtlines:0 "SELECT #CHROM, POS, REF, ALT, MISTIC_score, MISTIC_pred FROM './MISTIC_GRCh37.tsv' WHERE #CHROM = '%chrom%' AND POS = '%pos%'"
pause
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Queries the MISTIC dataset http://www.lbgi.fr/mistic/download
Requires LogParser 2.2 to be installed. https://www.microsoft.com/download/details.aspx?id=24659

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