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crazyhottommy/rename.sh

Created August 14, 2014 14:25
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rename_files
Raw
rename.sh
for fspec1 in *.gz
do
#echo $fspec1
fspec2=$(echo ${fspec1} | sed "s/\([1-4]egg\)_r\([1-2]\)_0\([1-2]\)_sub.fastq.gz/\1_R\3_00\2.fastq.gz/")
echo $fspec2
mv ${fspec1} ${fspec2}
done
Raw
rename_one_liner.sh
rename "s/([1-4]egg)_r([1-2])_0([1-2])_sub.fastq.gz/\$1_R\$3_00\$2.fastq.gz/" *fastq.gz
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