Created
May 26, 2021 15:48
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This scripts helps to read phylogenetic trees in newick or nexus automatically
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| library(phytools) | |
| # fullNew = path to tree files | |
| trees<-lapply(seq_along(fullNew), function(x){ | |
| cat(x,'_',fullNew[x], '\n') | |
| k<-grep('#NEXUS', readLines(fullNew[x])) | |
| if(length(k)>0){ | |
| read.nexus(fullNew[x]) | |
| }else{ | |
| read.newick(fullNew[x]) | |
| } | |
| }) |
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