crosenth

#!/usr/bin/env python3
'''
Generates full lineages for taxons in an ncbi nodes.dmp file 
and optionally expands "no rank" ranks.
'''
import argparse
import sys


def get_args():

crosenth

#!/usr/bin/env bash

csvfile=${@: -1}
head --lines 1 $csvfile && grep "$@"

crosenth

contributors = env.Command(
    source='.git/logs/HEAD',
    target='contributors.txt',
    action=('git log --all --format="%cN <%cE>" | sort | uniq > $TARGET'))

crosenth

#!/usr/bin/env python3

import argparse
import sys


def get_args():
    parser = argparse.ArgumentParser()
    parser.add_argument('arg1')
    parser.add_argument('--option1')

crosenth

"""
Short description here
"""

import os

from bioscons.fileutils import Targets
from bioscons.slurm import SlurmEnvironment

from SCons.Script import ARGUMENTS, Variables, Decider

crosenth

"""
Short description here
"""

import sys 

from ungapatchka.utils import Opener

def build_parser(parser):
    parser.add_argument('in',