<<<<<<<<<<>>>>>>>>>>>>>

hq_save.R

library(jsonlite)
library(reticulate)
library(raster)

np <- import("numpy")

save_manual_labeling_scribble <- function(point, output) {
  points_x <- list.files(
    path = sprintf("%s/%s.iris/segmentation", point, basename(point)),
    pattern = "2_final\\.npy",
    full.names = TRUE,
    recursive = TRUE
  )
  points_xx <- list.files(
    path = sprintf("%s/%s.iris/segmentation", point, basename(point)),
    pattern = "2_user\\.npy",
    full.names = TRUE,
    recursive = TRUE
  )
  base <- raster(list.files(
    path = point,
    pattern = "angle\\.tif",
    full.names = TRUE,
    recursive = TRUE
  )[1])
  create_r <- function(input_user, input_seg,  base) {
    base2 <- base
    npfiles <- np$load(input_seg)
    npfiles_clear <- np$load(input_user)
    
    # clear
    ly01 <- npfiles[,,1] * 1
    base[] <- npfiles_clear*1
    base2[] <- ly01
    ly01 <- base * base2
    
    # thick cloud - center
    ly02 <- npfiles[,,2] * 2
    base[] <- ly02
    ly02 <- base
    
    # thick cloud - edges
    ly03 <- npfiles[,,3] * 3
    base[] <- ly03
    ly03 <- base
    
    # thin cloud - center
    ly04 <- npfiles[,,4] * 4
    base[] <- ly04
    ly04 <- base
    
    layers <- ly01 + ly02 + ly03 + ly04 + ly05 + ly06 + ly07
    layers
  }
  for (index in 1:5) {
    input_user <- points_xx[index]
    input_seg <- points_x[index]
    image_name <- basename(dirname(points_x[index]))
    point_name <- points_x[index] %>% 
      dirname() %>% 
      dirname() %>% 
      dirname() %>% 
      dirname() %>% 
      basename()
    raster_r <- create_r(input_user = input_user, input_seg = input_seg, base = base)
    names <- sprintf("%s/%s__%s__scribble.tif", output, point_name, image_name)
    writeRaster(x = raster_r, filename = names, overwrite = TRUE)
  }
}

# FOLDER WITH SCRIBBLE LABELS
PATH <- "/home/csaybar/Desktop/dd/"

# FOLDER TO SAVE
points <- list.files(PATH, full.names = TRUE)

for (point in points) {
  print(paste0("POINT:", basename(points)))
  save_manual_labeling_scribble(point, output) 
}