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Awk: MATS to PrimerSeq
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| # SE | |
| cat SE.MATS.ReadsOnTargetAndJunctionCounts.txt | awk -F"\t" '{if($5=="+") print $5 $4 ":" $6 "-" $7 "," $5 $4 ":" $8 "-" $9 "," $5 $4 ":" $10 "-" $11; else print $5 $4 ":" $6 "-" $7 "," $5 $4 ":" $10 "-" $11 "," $5 $4 ":" $8 "-" $9;}' | tail -n +2 > se.txt | |
| # MXE | |
| cat MXE.MATS.ReadsOnTargetAndJunctionCounts.txt | awk -F"\t" '{if($5=="+") print $5 $4 ":" $6 "-" $7 "," $5 $4 ":" $10 "-" $11 "," $5 $4 ":" $12 "-" $13; else print $5 $4 ":" $6 "-" $7 "," $5 $4 ":" $12 "-" $13 "," $5 $4 ":" $10 "-" $11 }' | tail -n +2 > mxe.txt |
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