ctrueden

/*
 * Is your Fiji installation's Plugins menu too tall on Linux,
 * where it runs past the bottom of your screen?
 * Here is a hacky script to shrink the font, so that you can
 * fit more items before running out of screen real estate!
 *
 * License: CC0
 */

#@ Float squashFactor (value=0.75f)

ctrueden

Operation	IntelliJ calls it	IntelliJ (Win/Linux)	IntelliJ (macOS)	Eclipse calls it	Eclipse (Win/Linux)	Eclipse (macOS)
Look up where a variable or class is actually used/referenced	Find usages	alt+shift+7	alt+F7	Global lookup	ctrl+shift+G	cmd+shift+G
Move the cursor to the next compile error or warning	Jump to next problem	F2	F2	Next	ctrl+.	cmd+.
Show recommended fixes for the selected problem	Pop up context actions	alt+enter	alt+enter	Show quick fixes	ctrl+1

ctrueden

package net.imglib2.mesh.alg;

import java.io.IOException;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.function.BiConsumer;

import net.imglib2.Localizable;
import net.imglib2.mesh.io.ply.PLYMeshIO;

ctrueden

import java.io.File;
import java.io.IOException;

import net.imagej.Dataset;
import net.imagej.ImageJ;
import net.imagej.mesh.Mesh;
import net.imagej.mesh.io.ply.PLYMeshIO;
import net.imagej.ops.OpService;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.converter.Converters;

ctrueden

#@ DatasetService ds
#@ net.imagej.units.UnitService units
#@ UIService ui

// Parameters to play with!

// log-linear equation: cal(raw) = a + b * ln(c + d*raw)
xa = 0; xb = 10; xc = 1; xd = 1   // cal(xRaw) = 10*ln(1+xRaw)
ya = 0; yb = 5000; yc = 1; yd = 3000 // cal(yRaw) = 5000*ln(1+3000*yRaw)
// units

ctrueden

$ for f in *.tar.gz
do
echo
echo "[$f]"
result=$(tar tf "$f" | grep -i 'jvm\.\(dll\|dylib\|so\)$')
test "$result" && echo "$result" || echo "--> NOTHING FOUND"
done; for f in *.zip
do
echo
echo "[$f]"

ctrueden

#!/usr/env/bin python

# Generate pyramidal OME-TIFF.
# Adapted from:
# https://github.com/ome/bio-formats-examples/blob/88d3f109093fb3350242061b00624af001f495e8/src/main/java/GeneratePyramidResolutions.java#L39-L43

import sys

import scyjava

ctrueden

# read in and display ImagePlus object(s)
from loci.plugins import BF
file = "/Users/curtis/data/tubhiswt4D.ome.tif"
imps = BF.openImagePlus(file)
for imp in imps:
    imp.show()

# read in and display ImagePlus(es) with arguments
from loci.common import Region
from loci.plugins.in import ImporterOptions

ctrueden

Background and Context

We have a set of many components (software libraries and/or applications) known as a Bill of Materials (BOM). Many of these components depend on other components, forming a dependency graph (no cycles).

These components are under active development, with new versions being released over time. The BOM lists each component at a specific version, with the idea that all components of the BOM will work successfully together when used as dependencies of a derivative work.

For example, suppose we have the following components:

• Guava v21 ← no dependencies
• Math v1 ← depends on Guava v21

ctrueden

#!/usr/bin/env python

#
# scifio.py - Open images as numpy arrays using SCIFIO and Bio-Formats.
#

# -- Settings --

max_mem_mb = '6144'
scifio_lifesci = False