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#@ ImageJ ij
#@ File[] imageFiles
#@ File(style = "save") outFile
#@ boolean showStack

import java.util.Arrays
import net.imglib2.FinalInterval
import net.imglib2.type.numeric.integer.UnsignedByteType
import net.imglib2.util.Intervals

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#@ Long(value = 3000) size

import java.util.function.BiConsumer
import net.imglib2.img.display.imagej.ImageJFunctions
import net.imglib2.position.FunctionRandomAccessible
import net.imglib2.type.numeric.integer.UnsignedByteType
import net.imglib2.view.Views

// Define a function in 2-space.
ndim = 2

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#@ DatasetIOService dio
#@ File imageFile
#@ long x
#@ long y
#@ long width
#@ long height
#@output Dataset dataset

from io.scif.config import SCIFIOConfig
from io.scif.img import ImageRegion, Range

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#@dependency(group="org.boofcv", module="boofcv-core", version="0.33")
#@dependency(group="org.boofcv", module="boofcv-swing", version="0.32")

#@both ImagePlus imp
#@output ImagePlus (label="Watersheds") watersheds
#@output ImagePlus (label="Regions") regions
#@output ImagePlus (label="Seeds") seeds

import boofcv.alg.filter.binary.BinaryImageOps
import boofcv.alg.filter.binary.ThresholdImageOps

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$ for jar in $(mvn dependency:build-classpath | grep -A1 'Dependencies classpath' | tail -n1 | gsed 's/:/\n/g')                                       # C 1 {2019-03-01 16:41:33}
do
  if [ -f "$jar" ]
  then
    autoModule=$(unzip -q -c "$jar" META-INF/MANIFEST.MF | grep 'Automatic-Module')
    if [ "$autoModule" ]
    then
      echo "$jar: $autoModule"
#    else
#      echo "$jar: Automatic-Module ENTRY IS MISSING"

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import java.util.Set;

import net.imagej.ImageJ;
import net.imglib2.FinalDimensions;
import net.imglib2.algorithm.labeling.ConnectedComponents.StructuringElement;
import net.imglib2.img.Img;
import net.imglib2.roi.labeling.ImgLabeling;
import net.imglib2.roi.labeling.LabelingType;
import net.imglib2.type.numeric.IntegerType;
import net.imglib2.type.numeric.integer.UnsignedByteType;