Created
December 12, 2020 04:18
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convert chromosome format
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package main | |
import ( | |
"encoding/csv" | |
"io/ioutil" | |
"log" | |
"net/http" | |
"os" | |
"strconv" | |
"strings" | |
) | |
func BytesToString(data []byte) string { | |
return string(data[:]) | |
} | |
func main() { | |
buildNumber := "hg38" | |
file, err := os.Create("chrConversion.csv") | |
if err != nil { | |
log.Fatal(err) | |
} | |
defer func() { | |
err = file.Close() | |
if err != nil { | |
log.Println(err) | |
} | |
}() | |
writer := csv.NewWriter(file) | |
defer writer.Flush() | |
for chr := 1; chr <= 22; chr++ { | |
var data []string | |
client := &http.Client{} | |
req, err := http.NewRequest("GET", "https://mutalyzer.nl/json/chromAccession?"+"build="+buildNumber+"&name="+"chr"+strconv.FormatInt(int64(chr), 10), nil) | |
if err != nil { | |
log.Fatal(err) | |
} | |
resp, err := client.Do(req) | |
if resp == nil { | |
log.Fatal(err) | |
} | |
if resp.StatusCode != 200 { | |
log.Fatal(err) | |
} | |
bodyBytes, err := ioutil.ReadAll(resp.Body) | |
if err != nil { | |
log.Fatal(err) | |
} | |
chrConverted := BytesToString(bodyBytes) | |
removeDouble := strings.Replace(chrConverted, "\"", "", 2) | |
data = append(data, "chr"+strconv.FormatInt(int64(chr), 10), removeDouble) | |
err = writer.Write(data) | |
if err != nil { | |
log.Fatal(err) | |
} | |
} | |
} |
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