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Projets UMR 2023
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| #library(openxlsx) | |
| library(tidyverse) | |
| library(readxl) | |
| library(nominatimlite) | |
| library(sf) | |
| library(htmltools) | |
| # lire fichier excel | |
| f_xlsx <- "data/00_Ressources_propres_UMR_2021_2023_corrige.xlsx" | |
| #tbl_proj <- readxl::read_xlsx(f_xlsx, skip=1) | |
| typecol <- c( | |
| A='text', B='text', C='skip', D='skip', E='skip', | |
| F='skip', G='skip', H='guess', I='list', J='skip', | |
| K='skip', L='skip', M='skip', N='skip', O='skip', | |
| P='skip', Q='skip', R='skip', S='skip', T='skip', | |
| U='skip', V='text') | |
| nomcol <- c('nom', 'porteur', 'fin', 'site_d_etude', 'lien') | |
| tbl_proj <- readxl::read_xlsx( | |
| f_xlsx, sheet = 1, | |
| col_names=nomcol, col_types=typecol, skip=2) %>% | |
| mutate(rid=row_number(), .before=1) %>% | |
| filter(!is.na(site_d_etude)) | |
| # nouveau tableau avec 1 ligne par site d'etude | |
| tbl_proj2 <- tbl_proj %>% | |
| separate_longer_delim(cols='site_d_etude', delim=',') %>% | |
| mutate(site_d_etude=str_trim(site_d_etude)) | |
| # liste des sites d'etude | |
| liste_lieux1 <- tbl_proj2$site_d_etude %>% | |
| factor() %>% levels() | |
| # préciser localisation pour noms de lieux trop imprécis | |
| liste_lieux2 <- case_match( | |
| liste_lieux1, | |
| 'Afrique de l’Est' ~ "Nairobi", | |
| 'Afrique de l’Ouest' ~ "Bamako", | |
| 'Amazonie' ~ "Manaus", | |
| 'Congo' ~ "Congo-Brazzaville", | |
| 'Europe' ~ "Bruxelles", | |
| 'Méditerranée française' ~ "Marseille", | |
| 'Pacifique' ~ "Kiribati", | |
| 'Territoires Britanniques de l\'Atlantique Sud' ~ "Géorgie du Sud-et-les îles Sandwich du Sud", | |
| .default = liste_lieux1 | |
| ) | |
| liste_lieux2 | |
| # chercher lat lon dans nominatim | |
| tbl_nomin <- nominatimlite::geo_lite(liste_lieux2) | |
| tbl_nomin2 <- tbl_nomin %>% | |
| add_column(liste_lieux1, .before = 'query') %>% | |
| mutate(lat=round(lat,2), lon=round(lon,2)) | |
| tbl_nomin2 %>% View() | |
| # enregistrer tbl en geojson | |
| sf_nomin2 <- st_as_sf(tbl_nomin2, coords = c("lon", "lat"), crs=4326) | |
| st_write( | |
| sf_nomin2, | |
| dsn = "sites_projet.geojson", layer = "sites_projet.geojson", | |
| delete_dsn = TRUE) | |
| # purrr | |
| genere_li <- function(x, l) { | |
| if(is.na(l)) { | |
| return(tags$li(x, .noWS="outside")) | |
| } else { | |
| return(tags$li(tags$a(x, href=l, .noWS="outside"), .noWS="outside")) | |
| } | |
| } | |
| liste_projets <- function(tbl, site) { | |
| l_li <- purrr::map2(tbl$nom, tbl$lien, genere_li) | |
| if (length(l_li) > 0) { | |
| return(tagList( | |
| strong(site), | |
| tags$ul(l_li, .noWS="outside") | |
| ) %>% as.character() | |
| ) | |
| } else { | |
| return(tagList( | |
| strong(site), | |
| p("-") | |
| ) %>% as.character() | |
| ) | |
| } | |
| } | |
| # agréger les projets par site et générer listes html | |
| tbl_sites <- tbl_proj2 %>% | |
| select(nom, site_d_etude, lien) %>% | |
| group_by(site_d_etude) %>% | |
| nest() | |
| tbl_sites <- tbl_sites %>% | |
| mutate( | |
| desc_html=map2_chr(data, site_d_etude, liste_projets) | |
| ) | |
| tbl_sites_projets <- inner_join( | |
| tbl_sites, tbl_nomin2, by=(c("site_d_etude"="liste_lieux1"))) %>% | |
| select(site_d_etude, desc_html, lon, lat) | |
| # conversion geojson | |
| sf_sites_projets <- | |
| st_as_sf(tbl_sites_projets, coords = c("lon", "lat"), crs=4326) | |
| st_write( | |
| sf_sites_projets, | |
| dsn = "sites_projets.geojson", layer = "sites_projets.geojson", | |
| delete_dsn = TRUE) | |
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| { | |
| "type": "FeatureCollection", | |
| "name": "sites_projets.geojson", | |
| "crs": { | |
| "type": "name", | |
| "properties": { | |
| "name": "urn:ogc:def:crs:OGC:1.3:CRS84" | |
| } | |
| }, | |
| "features": [{ | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Guinée Bissau", | |
| "desc_html": "<strong>Guinée Bissau</strong><ul><li><a href=\"https://www.espace-dev.fr/malmont-desira/\">MALMON (DESIRA)</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-15.24, 11.82] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "La Réunion", | |
| "desc_html": "<strong>La Réunion</strong><ul><li><a href=\"https://www.espace-dev.fr/move-on/\">MOVE ON</a></li><li>SELINA</li><li>FUTURISKS</li><li><a href=\"https://www.espace-dev.fr/anisette-2/\">ANISETTE</a></li><li>Trajectoire et résilience des socio-écosystèmes lagunaires et côtiers face aux changements climatiques</li><li>CREOCEAN</li><li>Observatoire des risques côtiers La Réunion 1</li><li>BIOINDIC phase 1 2 3</li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [55.54, -21.13] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Guyane Française", | |
| "desc_html": "<strong>Guyane Française</strong><ul><li><a href=\"https://www.espace-dev.fr/move-on/\">MOVE ON</a></li><li><a href=\"https://www.espace-dev.fr/seas-guyane-phase-2/\">SEAS GUYANE</a></li><li><a href=\"https://www.espace-dev.fr/progysat-projet-de-cooperation-regionale-pour-lobservation-des-guyanes-par-satellite/\">PROGYSAT</a></li><li><a href=\"https://www.espace-dev.fr/anisette-2/\">ANISETTE</a></li><li>DYAPAZON</li><li><a href=\"https://www.espace-dev.fr/aimce/\">AIMCEE</a></li><li><a href=\"https://www.espace-dev.fr/deliciosa-2/\">DELICIOSA</a></li><li>Dengue et Leptospirose intra urbaine</li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-53.0, 4.0] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Canaries", | |
| "desc_html": "<strong>Canaries</strong><ul><li><a href=\"https://www.espace-dev.fr/move-on/\">MOVE ON</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-16.62, 28.29] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Açores", | |
| "desc_html": "<strong>Açores</strong><ul><li><a href=\"https://www.espace-dev.fr/move-on/\">MOVE ON</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-25.47, 37.81] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Territoires Britanniques de l'Atlantique Sud", | |
| "desc_html": "<strong>Territoires Britanniques de l'Atlantique Sud</strong><ul><li><a href=\"https://www.espace-dev.fr/move-on/\">MOVE ON</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-35.81, -54.84] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Pacifique", | |
| "desc_html": "<strong>Pacifique</strong><ul><li><a href=\"https://www.espace-dev.fr/falah-program-family-farming-lifestyle-and-health-in-the-pacific-2/\">FALAH</a></li><li><a href=\"https://www.espace-dev.fr/socpacific-a-sea-of-connections-contextualizing-fisheries-in-the-south-pacific-region-2/\">SOCPACIFIC</a></li><li>Mangrove</li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [173.66, 0.34] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Europe", | |
| "desc_html": "<strong>Europe</strong><ul><li><a href=\"https://www.espace-dev.fr/highlands-3/\">HIGHLANDS</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [4.35, 50.85] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Sénégal", | |
| "desc_html": "<strong>Sénégal</strong><ul><li><a href=\"https://www.espace-dev.fr/habitable-2/\">HABITABLE</a></li><li><a href=\"https://www.espace-dev.fr/ramses2/\">RAMSES2</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-14.45, 14.48] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Burkina Faso", | |
| "desc_html": "<strong>Burkina Faso</strong><ul><li><a href=\"https://www.espace-dev.fr/ramses2/\">RAMSES2</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-1.69, 12.08] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Bénin", | |
| "desc_html": "<strong>Bénin</strong><ul><li><a href=\"https://www.espace-dev.fr/observatoire-pilote-des-paysages-et-des-dynamiques-agricoles-du-benin/\">OBSYDYA BENIN (DESIRA)</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [2.26, 9.53] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Côte d'Ivoire", | |
| "desc_html": "<strong>Côte d'Ivoire</strong><ul><li>SISEB-CI</li><li><a href=\"https://www.espace-dev.fr/lmi-nexus/\">LMI Nexus</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-5.57, 7.99] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Vanuatu", | |
| "desc_html": "<strong>Vanuatu</strong><ul><li><a href=\"https://www.espace-dev.fr/dynamique_urbaines_vanuatu/\">DURVIS</a></li><li>EO4DM</li><li>EO4DM</li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [168.11, -16.53] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Iles Salomon", | |
| "desc_html": "<strong>Iles Salomon</strong><ul><li><a href=\"https://www.espace-dev.fr/dynamique_urbaines_vanuatu/\">DURVIS</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [159.11, -8.71] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Brésil", | |
| "desc_html": "<strong>Brésil</strong><ul><li><a href=\"https://www.espace-dev.fr/seas-guyane-phase-2/\">SEAS GUYANE</a></li><li><a href=\"https://www.espace-dev.fr/progysat-projet-de-cooperation-regionale-pour-lobservation-des-guyanes-par-satellite/\">PROGYSAT</a></li><li><a href=\"https://www.espace-dev.fr/bonds-2/\">BONDS</a></li><li><a href=\"https://www.espace-dev.fr/covpath-un-nouveau-cadre-pour-relier-durablement-lhomme-et-a-la-biosphere/\">COVPATH</a></li><li><a href=\"https://www.espace-dev.fr/anisette-2/\">ANISETTE</a></li><li>DYAPAZON</li><li><a href=\"https://www.espace-dev.fr/aimce/\">AIMCEE</a></li><li><a href=\"https://www.espace-dev.fr/parsec/\">PARCELLE</a></li><li><a href=\"https://www.espace-dev.fr/deliciosa-2/\">DELICIOSA</a></li><li><a href=\"https://www.espace-dev.fr/tosca-ces-paysage/\">CES PAYSAGE</a></li><li>Dengue et Leptospirose intra urbaine</li><li><a href=\"https://www.espace-dev.fr/__trashed-2/\">Forest for Food (F4F)</a></li><li><a href=\"https://www.espace-dev.fr/saberes/\">SABERES</a></li><li><a href=\"https://www.espace-dev.fr/lmi-sentinala/\">LMI Sentinela</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-53.2, -10.33] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Suriname", | |
| "desc_html": "<strong>Suriname</strong><ul><li><a href=\"https://www.espace-dev.fr/seas-guyane-phase-2/\">SEAS GUYANE</a></li><li><a href=\"https://www.espace-dev.fr/progysat-projet-de-cooperation-regionale-pour-lobservation-des-guyanes-par-satellite/\">PROGYSAT</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-56.08, 4.14] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Guyana", | |
| "desc_html": "<strong>Guyana</strong><ul><li><a href=\"https://www.espace-dev.fr/progysat-projet-de-cooperation-regionale-pour-lobservation-des-guyanes-par-satellite/\">PROGYSAT</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-58.64, 4.84] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Madagascar", | |
| "desc_html": "<strong>Madagascar</strong><ul><li><a href=\"https://www.espace-dev.fr/mpa-poverty-2/\">MPA POVERTY</a></li><li><a href=\"https://www.espace-dev.fr/fish2sustainability-renforcer-la-contribution-de-la-peche-artisanale-aux-objectifs-de-developpement-durable/\">Fish2Sustainability</a></li><li><a href=\"https://www.espace-dev.fr/madatlas/\">MADATLAS</a></li><li><a href=\"https://www.espace-dev.fr/cibseea-the-ciguatoxins-impacts-on-biology-ecology-economy-and-health/\">CIBSEEA</a></li><li><a href=\"https://www.espace-dev.fr/anisette-2/\">ANISETTE</a></li><li><a href=\"https://www.espace-dev.fr/tosca-ces-paysage/\">CES PAYSAGE</a></li><li><a href=\"https://www.espace-dev.fr/sos-mambo/\">SOS MAMBO</a></li><li><a href=\"https://www.espace-dev.fr/didem-2-2/\">DIDEM</a></li><li>CIMOPOLEE</li><li><a href=\"https://www.ird.fr/lancement-du-lmi-paysages-repondre-aux-enjeux-lies-la-durabilite-des-paysages\">LMI Paysages</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [46.44, -18.92] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Comores", | |
| "desc_html": "<strong>Comores</strong><ul><li><a href=\"https://www.espace-dev.fr/mpa-poverty-2/\">MPA POVERTY</a></li><li><a href=\"https://www.espace-dev.fr/didem-2-2/\">DIDEM</a></li><li>MOHELI</li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [44.28, -12.2] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Mozambique", | |
| "desc_html": "<strong>Mozambique</strong><ul><li><a href=\"https://www.espace-dev.fr/mpa-poverty-2/\">MPA POVERTY</a></li><li><a href=\"https://www.espace-dev.fr/didem-2-2/\">DIDEM</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [34.91, -19.3] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Kenya", | |
| "desc_html": "<strong>Kenya</strong><ul><li><a href=\"https://www.espace-dev.fr/mpa-poverty-2/\">MPA POVERTY</a></li><li><a href=\"https://www.espace-dev.fr/fish2sustainability-renforcer-la-contribution-de-la-peche-artisanale-aux-objectifs-de-developpement-durable/\">Fish2Sustainability</a></li><li><a href=\"https://www.espace-dev.fr/didem-2-2/\">DIDEM</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [38.43, 1.44] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Tanzanie", | |
| "desc_html": "<strong>Tanzanie</strong><ul><li><a href=\"https://www.espace-dev.fr/mpa-poverty-2/\">MPA POVERTY</a></li><li><a href=\"https://www.espace-dev.fr/didem-2-2/\">DIDEM</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [35.79, -6.52] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Afrique de l’Ouest", | |
| "desc_html": "<strong>Afrique de l’Ouest</strong><ul><li><a href=\"https://www.espace-dev.fr/steward-2/\">STEWARD</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-7.98, 12.61] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Indonésie", | |
| "desc_html": "<strong>Indonésie</strong><ul><li><a href=\"https://www.espace-dev.fr/covpath-un-nouveau-cadre-pour-relier-durablement-lhomme-et-a-la-biosphere/\">COVPATH</a></li><li><a href=\"https://www.espace-dev.fr/cibseea-the-ciguatoxins-impacts-on-biology-ecology-economy-and-health/\">CIBSEEA</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [117.89, -2.48] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Tchad", | |
| "desc_html": "<strong>Tchad</strong><ul><li><a href=\"https://www.espace-dev.fr/covpath-un-nouveau-cadre-pour-relier-durablement-lhomme-et-a-la-biosphere/\">COVPATH</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [19.02, 15.61] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Nigeria", | |
| "desc_html": "<strong>Nigeria</strong><ul><li><a href=\"https://www.espace-dev.fr/fish2sustainability-renforcer-la-contribution-de-la-peche-artisanale-aux-objectifs-de-developpement-durable/\">Fish2Sustainability</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [8.0, 9.6] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Equateur", | |
| "desc_html": "<strong>Equateur</strong><ul><li><a href=\"https://www.espace-dev.fr/fish2sustainability-renforcer-la-contribution-de-la-peche-artisanale-aux-objectifs-de-developpement-durable/\">Fish2Sustainability</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-79.37, -1.34] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Mexique", | |
| "desc_html": "<strong>Mexique</strong><ul><li><a href=\"https://www.espace-dev.fr/fish2sustainability-renforcer-la-contribution-de-la-peche-artisanale-aux-objectifs-de-developpement-durable/\">Fish2Sustainability</a></li></ul>" | |
| }, | |
| "geometry": { | |
| "type": "Point", | |
| "coordinates": [-102.01, 23.66] | |
| } | |
| }, | |
| { | |
| "type": "Feature", | |
| "properties": { | |
| "site_d_etude": "Colombie", | |
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