/cs_check.R
Created Sep 17, 2017
codeship basic check
| check_results <- devtools::check() | |
| print(check_results) | |
| if (length(check_results$errors) + length(check_results$warnings) + length(check_results$notes) >= 1) { | |
| stop('error, warning or note found') | |
| } |
| mkdir -p $HOME/cache/packrat/lib | |
| mkdir -p $HOME/cache/packrat/lib-R | |
| mkdir -p $HOME/cache/packrat/lib-ext | |
| cp -r $HOME/cache/packrat/lib ./packrat/ | |
| cp -r $HOME/cache/packrat/lib-R ./packrat/ | |
| cp -r $HOME/cache/packrat/lib-ext ./packrat/ | |
| R -e "0" --args --bootstrap-packrat | |
| R -e "packrat::restore(restart = FALSE)" | |
| cp -r packrat/lib $HOME/cache/packrat | |
| cp -r packrat/lib-R $HOME/cache/packrat | |
| cp -r packrat/lib-ext $HOME/cache/packrat |
| R_VERSION=${R_VERSION:="3.4.1"} | |
| R_PATH=${R_PATH:=$HOME/r} | |
| CACHED_DOWNLOAD="${HOME}/cache/R-${R_VERSION}.tar.gz" | |
| mkdir -p "${R_PATH}" | |
| wget --continue --output-document "${CACHED_DOWNLOAD}" "https://cran.r-project.org/src/base/R-${R_VERSION%%.*}/R-${R_VERSION}.tar.gz";;; | |
| tar -xaf "${CACHED_DOWNLOAD}" --strip-components=1 --directory "${R_PATH}" | |
| export PATH="${R_PATH}/bin:${PATH}" | |
| cd "${R_PATH}" || exit 1 | |
| ./configure | |
| make | |
| # check the correct version is used | |
| R --version | grep "${R_VERSION}" | |
| cd ~/clone | |
| chmod +x codeship/cs_packrat_setup.sh | |
| codeship/cs_packrat_setup.sh |
| Rscript cs_check.R |
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